Wall clock time and date at job start Mon Mar 30 2020 02:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48199 * 110.99828 * 2 1 4 4 C 1.50767 * 105.52249 * 267.70588 * 3 2 1 5 5 C 1.41832 * 145.15825 * 162.88525 * 4 3 2 6 6 C 1.41426 * 126.60989 * 359.96572 * 5 4 3 7 7 H 1.07996 * 120.00205 * 0.02562 * 6 5 4 8 8 C 1.39853 * 119.99850 * 180.02562 * 6 5 4 9 9 N 1.30896 * 119.99768 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99991 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47123 * 59.99981 * 10 8 6 12 12 H 1.48499 * 109.46907 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46996 * 299.99839 * 10 8 6 14 14 N 1.32859 * 106.77173 * 179.97438 * 5 4 3 15 15 N 1.28541 * 109.91160 * 359.97438 * 14 5 4 16 16 C 1.46506 * 124.85280 * 180.25764 * 15 14 5 17 17 C 1.35081 * 109.02656 * 342.86046 * 4 3 2 18 18 C 1.48145 * 111.00251 * 245.64581 * 2 1 3 19 19 H 1.09000 * 109.46913 * 174.35320 * 1 2 3 20 20 H 1.08995 * 109.47136 * 294.35409 * 1 2 3 21 21 H 1.08999 * 109.46823 * 54.35679 * 1 2 3 22 22 H 1.09001 * 110.23593 * 26.71557 * 3 2 1 23 23 H 1.08997 * 110.23564 * 148.69312 * 3 2 1 24 24 H 0.96996 * 119.99764 * 179.97438 * 9 8 6 25 25 H 1.08999 * 109.47152 * 269.69536 * 16 15 14 26 26 H 1.09008 * 109.47067 * 29.69278 * 16 15 14 27 27 H 1.08999 * 109.47253 * 149.69321 * 16 15 14 28 28 H 1.09004 * 110.22274 * 333.20973 * 18 2 1 29 29 H 1.08998 * 110.22097 * 211.27989 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0001 1.3836 0.0000 4 6 2.1990 1.7394 -1.4515 5 6 2.3897 2.7991 -2.3747 6 6 2.4597 4.1789 -2.0722 7 1 2.3645 4.5130 -1.0496 8 6 2.6521 5.1106 -3.0972 9 7 2.7670 4.7056 -4.3367 10 14 2.7453 6.9330 -2.6976 11 1 3.8795 7.1793 -1.7714 12 1 2.9515 7.7043 -3.9497 13 1 1.4782 7.3640 -2.0543 14 7 2.4898 2.2457 -3.5784 15 7 2.3810 0.9684 -3.4833 16 6 2.4486 0.0361 -4.6114 17 6 2.1990 0.6062 -2.1867 18 6 2.0000 -0.5703 -1.2600 19 1 -0.3633 -1.0227 -0.1011 20 1 -0.3633 0.4238 0.9362 21 1 -0.3633 0.5989 -0.8351 22 1 1.2823 2.0629 0.4598 23 1 2.9510 1.4224 0.5314 24 1 2.9001 5.3518 -5.0476 25 1 1.4476 -0.1219 -5.0127 26 1 3.0901 0.4520 -5.3885 27 1 2.8586 -0.9153 -4.2725 28 1 1.2827 -1.2703 -1.6884 29 1 2.9511 -1.0700 -1.0760 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042335.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:14 Heat of formation + Delta-G solvation = 104.689326 kcal Electronic energy + Delta-G solvation = -13576.061649 eV Core-core repulsion = 11308.796918 eV Total energy + Delta-G solvation = -2267.264731 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.91657 -37.30067 -33.52653 -31.52624 -29.72299 -27.70094 -26.90646 -25.57475 -23.69860 -21.11519 -19.39156 -18.69737 -16.46093 -15.50064 -15.21959 -14.50679 -14.37094 -14.12843 -13.45187 -12.87114 -12.34222 -11.97598 -11.95440 -11.53078 -11.28740 -11.14607 -11.03057 -10.92507 -10.60890 -10.36535 -9.75288 -9.13187 -9.01918 -7.94191 -7.38612 -7.14871 -6.26183 -4.11858 3.19772 3.25182 3.28487 3.34315 3.89409 4.22693 4.38131 4.56834 5.17370 5.52221 5.56948 5.65036 5.66253 5.87214 5.91632 5.96875 6.01285 6.17981 6.23843 6.42878 6.60205 7.02795 7.14059 7.38608 7.43230 7.55287 7.87577 8.36454 8.69831 9.02381 9.28817 10.28462 10.72045 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.037444 B = 0.011119 C = 0.008979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.611708 B = 2517.700092 C = 3117.747182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.506 5.506 3 C 0.126 3.874 4 C -0.302 4.302 5 C 0.223 3.777 6 C -0.448 4.448 7 H 0.078 0.922 8 C 0.072 3.928 9 N -0.784 5.784 10 Si 0.905 3.095 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.270 1.270 14 N -0.321 5.321 15 N -0.309 5.309 16 C 0.109 3.891 17 C -0.079 4.079 18 C 0.130 3.870 19 H 0.061 0.939 20 H 0.067 0.933 21 H 0.033 0.967 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.268 0.732 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 -7.481 3.136 8.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.228 5.228 3 C -0.002 4.002 4 C -0.316 4.316 5 C 0.074 3.926 6 C -0.487 4.487 7 H 0.096 0.904 8 C -0.146 4.146 9 N -0.413 5.413 10 Si 0.730 3.270 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.195 1.195 14 N -0.153 5.153 15 N -0.091 5.091 16 C -0.034 4.034 17 C -0.208 4.208 18 C 0.000 4.000 19 H 0.080 0.920 20 H 0.086 0.914 21 H 0.052 0.948 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.779 -7.639 2.103 8.121 hybrid contribution -0.363 1.143 0.027 1.199 sum -2.142 -6.497 2.130 7.164 Atomic orbital electron populations 1.22533 0.88662 1.01043 1.01282 1.65631 1.08223 1.17132 1.31808 1.20659 0.99381 0.87290 0.92882 1.21504 1.20104 0.94597 0.95425 1.18598 0.95645 0.92850 0.85463 1.18505 1.47780 0.88105 0.94332 0.90416 1.25755 0.93825 1.00283 0.94696 1.69957 1.36514 1.35055 0.99757 0.86452 0.79360 0.82966 0.78201 1.19381 1.20808 1.19456 1.74956 1.31632 0.86126 1.22591 1.44802 1.56031 1.05691 1.02625 1.21537 1.01926 0.91187 0.88716 1.22385 1.12372 0.98750 0.87325 1.20926 0.99969 0.92582 0.86558 0.92006 0.91445 0.94797 0.91956 0.90638 0.92152 0.92538 0.90150 0.91382 0.92100 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.17 60.07 0.55 0.77 15 2 N -0.51 -8.98 5.83 -243.30 -1.42 -10.40 15 3 C 0.13 2.58 6.65 -4.23 -0.03 2.55 15 4 C -0.30 -7.58 7.03 -104.34 -0.73 -8.31 15 5 C 0.22 6.49 6.78 -84.84 -0.57 5.92 15 6 C -0.45 -13.01 9.41 -37.76 -0.36 -13.36 15 7 H 0.08 2.13 7.84 -52.49 -0.41 1.72 15 8 C 0.07 2.01 5.49 -17.35 -0.10 1.91 15 9 N -0.78 -22.85 11.98 55.54 0.67 -22.19 15 10 Si 0.90 20.43 29.56 -169.99 -5.02 15.41 15 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 14 N -0.32 -9.28 10.26 32.27 0.33 -8.95 15 15 N -0.31 -7.47 3.72 -63.58 -0.24 -7.71 15 16 C 0.11 1.94 11.31 59.85 0.68 2.62 15 17 C -0.08 -1.81 7.66 -81.75 -0.63 -2.43 15 18 C 0.13 2.32 6.66 -4.10 -0.03 2.29 15 19 H 0.06 0.81 8.09 -51.93 -0.42 0.39 15 20 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 21 H 0.03 0.60 8.07 -51.93 -0.42 0.18 15 22 H 0.06 1.23 7.80 -51.93 -0.40 0.83 15 23 H 0.08 1.49 8.14 -51.93 -0.42 1.06 15 24 H 0.27 7.19 8.30 -40.82 -0.34 6.86 15 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.08 1.41 8.14 -51.92 -0.42 0.99 15 27 H 0.07 0.97 8.13 -51.93 -0.42 0.55 15 28 H 0.06 0.95 7.76 -51.93 -0.40 0.55 15 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 LS Contribution 249.52 15.07 3.76 3.76 Total: -1.00 -33.15 249.52 -6.86 -40.01 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -3.73 Total: -1.89 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -1.21 Total: -8.05 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.66 Total: -49.24 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.15 -6.86 -40.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042335.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.703 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds