Wall clock time and date at job start Mon Mar 30 2020 02:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48199 * 110.99828 * 2 1 4 4 C 1.50767 * 105.52249 * 267.70588 * 3 2 1 5 5 C 1.41832 * 145.15825 * 162.88525 * 4 3 2 6 6 C 1.41426 * 126.60989 * 359.96572 * 5 4 3 7 7 H 1.07996 * 120.00205 * 0.02562 * 6 5 4 8 8 C 1.39853 * 119.99850 * 180.02562 * 6 5 4 9 9 N 1.30896 * 119.99768 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99991 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47123 * 59.99981 * 10 8 6 12 12 H 1.48499 * 109.46907 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46996 * 299.99839 * 10 8 6 14 14 N 1.32859 * 106.77173 * 179.97438 * 5 4 3 15 15 N 1.28541 * 109.91160 * 359.97438 * 14 5 4 16 16 C 1.46506 * 124.85280 * 180.25764 * 15 14 5 17 17 C 1.35081 * 109.02656 * 342.86046 * 4 3 2 18 18 C 1.48145 * 111.00251 * 245.64581 * 2 1 3 19 19 H 1.09000 * 109.46913 * 174.35320 * 1 2 3 20 20 H 1.08995 * 109.47136 * 294.35409 * 1 2 3 21 21 H 1.08999 * 109.46823 * 54.35679 * 1 2 3 22 22 H 1.09001 * 110.23593 * 26.71557 * 3 2 1 23 23 H 1.08997 * 110.23564 * 148.69312 * 3 2 1 24 24 H 0.96996 * 119.99764 * 179.97438 * 9 8 6 25 25 H 1.08999 * 109.47152 * 269.69536 * 16 15 14 26 26 H 1.09008 * 109.47067 * 29.69278 * 16 15 14 27 27 H 1.08999 * 109.47253 * 149.69321 * 16 15 14 28 28 H 1.09004 * 110.22274 * 333.20973 * 18 2 1 29 29 H 1.08998 * 110.22097 * 211.27989 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0001 1.3836 0.0000 4 6 2.1990 1.7394 -1.4515 5 6 2.3897 2.7991 -2.3747 6 6 2.4597 4.1789 -2.0722 7 1 2.3645 4.5130 -1.0496 8 6 2.6521 5.1106 -3.0972 9 7 2.7670 4.7056 -4.3367 10 14 2.7453 6.9330 -2.6976 11 1 3.8795 7.1793 -1.7714 12 1 2.9515 7.7043 -3.9497 13 1 1.4782 7.3640 -2.0543 14 7 2.4898 2.2457 -3.5784 15 7 2.3810 0.9684 -3.4833 16 6 2.4486 0.0361 -4.6114 17 6 2.1990 0.6062 -2.1867 18 6 2.0000 -0.5703 -1.2600 19 1 -0.3633 -1.0227 -0.1011 20 1 -0.3633 0.4238 0.9362 21 1 -0.3633 0.5989 -0.8351 22 1 1.2823 2.0629 0.4598 23 1 2.9510 1.4224 0.5314 24 1 2.9001 5.3518 -5.0476 25 1 1.4476 -0.1219 -5.0127 26 1 3.0901 0.4520 -5.3885 27 1 2.8586 -0.9153 -4.2725 28 1 1.2827 -1.2703 -1.6884 29 1 2.9511 -1.0700 -1.0760 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042335.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:13 Heat of formation + Delta-G solvation = 79.767076 kcal Electronic energy + Delta-G solvation = -13577.142359 eV Core-core repulsion = 11308.796918 eV Total energy + Delta-G solvation = -2268.345441 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.74017 -38.86433 -35.53466 -33.33409 -31.34997 -29.37256 -28.71367 -27.10124 -25.51228 -22.68711 -21.24788 -20.52443 -18.34337 -17.35412 -16.83110 -16.32706 -15.90181 -15.65336 -14.90521 -14.66386 -13.93651 -13.61215 -13.46060 -13.10466 -12.88740 -12.75718 -12.53767 -12.48618 -12.40186 -12.27623 -11.63331 -11.12163 -10.85981 -9.57692 -9.38352 -8.98710 -8.31932 -6.25553 1.40200 1.40951 1.53032 1.56970 2.24873 2.33478 2.34399 3.12359 3.56565 3.64778 4.14241 4.18816 4.32619 4.45808 4.50536 4.62879 4.63886 4.84197 4.85234 4.99742 5.03340 5.18246 5.43882 5.47387 5.73391 5.88838 6.05532 6.40001 6.79408 6.95855 7.19406 8.29640 8.68105 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.037444 B = 0.011119 C = 0.008979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.611708 B = 2517.700092 C = 3117.747182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.495 5.495 3 C 0.133 3.867 4 C -0.345 4.345 5 C 0.178 3.822 6 C -0.486 4.486 7 H 0.078 0.922 8 C 0.022 3.978 9 N -0.826 5.826 10 Si 0.985 3.015 11 H -0.260 1.260 12 H -0.274 1.274 13 H -0.261 1.261 14 N -0.363 5.363 15 N -0.320 5.320 16 C 0.100 3.900 17 C -0.065 4.065 18 C 0.135 3.865 19 H 0.094 0.906 20 H 0.082 0.918 21 H 0.005 0.995 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.272 0.728 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 -8.832 4.078 10.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.216 5.216 3 C 0.005 3.995 4 C -0.358 4.358 5 C 0.029 3.971 6 C -0.525 4.525 7 H 0.096 0.904 8 C -0.192 4.192 9 N -0.456 5.456 10 Si 0.807 3.193 11 H -0.185 1.185 12 H -0.198 1.198 13 H -0.186 1.186 14 N -0.196 5.196 15 N -0.103 5.103 16 C -0.041 4.041 17 C -0.195 4.195 18 C 0.005 3.995 19 H 0.113 0.887 20 H 0.101 0.899 21 H 0.024 0.976 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.177 -9.021 3.045 9.766 hybrid contribution -0.270 1.399 -0.287 1.453 sum -2.446 -7.622 2.758 8.467 Atomic orbital electron populations 1.22657 0.87159 1.02696 1.01001 1.65669 1.09540 1.14903 1.31506 1.20625 0.99830 0.88834 0.90256 1.21996 1.21370 0.94331 0.98101 1.19081 0.96916 0.94099 0.87036 1.18883 1.49407 0.89307 0.94880 0.90391 1.26729 0.92767 1.05513 0.94181 1.70092 1.37697 1.36901 1.00868 0.85223 0.79728 0.76093 0.78292 1.18472 1.19847 1.18584 1.74797 1.32659 0.88692 1.23432 1.45265 1.55122 1.05211 1.04751 1.21936 1.03291 0.91576 0.87298 1.23206 1.09258 1.00346 0.86709 1.21201 1.02111 0.91066 0.85107 0.88742 0.89891 0.97607 0.92034 0.90241 0.91874 0.90800 0.90687 0.87186 0.88816 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.38 9.17 127.69 1.17 1.55 15 2 N -0.49 -16.09 5.83 -923.67 -5.38 -21.47 15 3 C 0.13 5.35 6.65 85.33 0.57 5.91 15 4 C -0.34 -17.48 7.03 -19.68 -0.14 -17.62 15 5 C 0.18 10.74 6.78 40.66 0.28 11.02 15 6 C -0.49 -29.36 9.41 23.45 0.22 -29.14 15 7 H 0.08 4.46 7.84 -2.91 -0.02 4.44 15 8 C 0.02 1.24 5.49 85.22 0.47 1.71 15 9 N -0.83 -49.85 11.98 21.81 0.26 -49.59 15 10 Si 0.99 42.91 29.56 68.60 2.03 44.94 15 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 13 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 14 N -0.36 -21.64 10.26 -51.82 -0.53 -22.17 15 15 N -0.32 -15.44 3.72 -355.08 -1.32 -16.77 15 16 C 0.10 3.39 11.31 127.77 1.45 4.84 15 17 C -0.07 -2.89 7.66 41.33 0.32 -2.57 15 18 C 0.14 4.34 6.66 85.44 0.57 4.91 15 19 H 0.09 2.05 8.09 -2.39 -0.02 2.03 15 20 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 21 H 0.01 0.18 8.07 -2.39 -0.02 0.16 15 22 H 0.06 2.42 7.80 -2.39 -0.02 2.40 15 23 H 0.08 3.07 8.14 -2.39 -0.02 3.05 15 24 H 0.27 15.04 8.30 -92.71 -0.77 14.27 15 25 H 0.07 2.24 8.14 -2.39 -0.02 2.23 15 26 H 0.07 2.60 8.14 -2.38 -0.02 2.58 15 27 H 0.11 2.77 8.13 -2.39 -0.02 2.75 15 28 H 0.09 2.45 7.76 -2.39 -0.02 2.43 15 29 H 0.11 3.00 8.14 -2.39 -0.02 2.98 15 Total: -1.00 -75.21 249.52 1.09 -74.12 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.14 Total: 10.35 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.90 Total: -19.41 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -6.97 Total: -110.00 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -75.21 1.09 -74.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042335.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.887 kcal (2) G-P(sol) polarization free energy of solvation -75.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds