Wall clock time and date at job start Mon Mar 30 2020 02:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.72103 * 2 1 4 4 C 1.53438 * 109.72664 * 120.63300 * 2 1 3 5 5 C 1.53141 * 109.31606 * 168.45973 * 4 2 1 6 6 C 1.53333 * 109.53822 * 290.60239 * 5 4 2 7 7 N 1.46228 * 108.72759 * 50.19683 * 6 5 4 8 8 C 1.37046 * 128.76855 * 162.93601 * 7 6 5 9 9 C 1.40135 * 126.77401 * 0.15209 * 8 7 6 10 10 H 1.07993 * 119.99772 * 0.02562 * 9 8 7 11 11 C 1.40237 * 119.99784 * 179.97438 * 9 8 7 12 12 N 1.30682 * 120.00463 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99752 * 180.02562 * 11 9 8 14 14 H 1.48509 * 109.46937 * 90.00586 * 13 11 9 15 15 H 1.48497 * 109.47427 * 210.00058 * 13 11 9 16 16 H 1.48496 * 109.47424 * 330.00660 * 13 11 9 17 17 N 1.33315 * 106.45604 * 180.15374 * 8 7 6 18 18 N 1.28854 * 109.41351 * 359.94928 * 17 8 7 19 19 C 1.30738 * 110.06187 * 359.97438 * 18 17 8 20 20 H 1.09001 * 109.47002 * 299.36701 * 1 2 3 21 21 H 1.08993 * 109.46955 * 59.37138 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.36967 * 1 2 3 23 23 H 1.09004 * 109.49990 * 288.40706 * 4 2 1 24 24 H 1.08999 * 109.50046 * 48.46774 * 4 2 1 25 25 H 1.08995 * 109.46428 * 50.62523 * 5 4 2 26 26 H 1.08998 * 109.46176 * 170.59844 * 5 4 2 27 27 H 1.09002 * 109.59697 * 169.97089 * 6 5 4 28 28 H 1.08996 * 109.59750 * 290.42753 * 6 5 4 29 29 H 0.97001 * 120.00187 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8979 1.0260 0.0000 4 6 2.0480 -0.7359 1.2428 5 6 3.5518 -0.9841 1.0945 6 6 3.7938 -2.0246 -0.0055 7 7 3.0509 -1.6261 -1.2003 8 6 3.2094 -2.0551 -2.4922 9 6 4.1401 -2.9945 -2.9560 10 1 4.8277 -3.4598 -2.2653 11 6 4.1779 -3.3311 -4.3169 12 7 3.3456 -2.7684 -5.1526 13 14 5.4181 -4.5838 -4.9351 14 1 4.8230 -5.9429 -4.8706 15 1 5.7816 -4.2689 -6.3400 16 1 6.6355 -4.5357 -4.0861 17 7 2.3035 -1.4025 -3.2207 18 7 1.6213 -0.6212 -2.4561 19 6 2.0391 -0.7247 -1.2217 20 1 -0.3633 0.5040 0.8956 21 1 -0.3633 0.5235 -0.8842 22 1 -0.3633 -1.0276 -0.0113 23 1 1.8654 -0.1274 2.1285 24 1 1.5295 -1.6894 1.3434 25 1 4.0493 -0.0517 0.8281 26 1 3.9537 -1.3534 2.0380 27 1 4.8582 -2.0723 -0.2358 28 1 3.4465 -3.0010 0.3321 29 1 3.3720 -3.0010 -6.0939 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261056273.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:51 Heat of formation + Delta-G solvation = 50.978182 kcal Electronic energy + Delta-G solvation = -13659.513283 eV Core-core repulsion = 11389.919462 eV Total energy + Delta-G solvation = -2269.593821 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.96484 -36.46149 -33.73488 -33.02520 -30.08037 -28.72228 -26.10894 -25.33945 -22.11969 -21.54472 -20.39344 -18.34210 -17.06971 -15.51030 -15.06788 -14.64005 -14.17641 -13.65795 -13.45957 -13.01502 -12.90710 -12.15133 -11.60454 -11.37136 -11.26208 -11.02752 -10.90364 -10.69684 -10.53286 -10.33329 -10.13440 -9.40328 -9.34970 -8.43947 -8.18811 -7.45186 -6.51975 -4.47354 3.00883 3.11671 3.15043 3.61377 3.92307 4.19303 4.58987 5.00438 5.02312 5.14362 5.40373 5.48094 5.70630 5.82596 5.89631 5.97302 6.01251 6.06274 6.13075 6.33982 6.37383 6.58034 6.74469 7.04967 7.18830 7.40395 7.80558 8.29601 8.33137 8.86208 9.05787 10.41690 10.90826 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.051377 B = 0.010227 C = 0.008758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.861923 B = 2737.303942 C = 3196.416913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.015 3.985 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.130 4.130 6 C 0.127 3.873 7 N -0.521 5.521 8 C 0.337 3.663 9 C -0.456 4.456 10 H 0.080 0.920 11 C 0.080 3.920 12 N -0.741 5.741 13 Si 0.917 3.083 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.264 1.264 17 N -0.346 5.346 18 N -0.300 5.300 19 C 0.071 3.929 20 H 0.049 0.951 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 0.646 10.549 10.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.006 4.006 3 H 0.092 0.908 4 C -0.154 4.154 5 C -0.168 4.168 6 C 0.002 3.998 7 N -0.222 5.222 8 C 0.092 3.908 9 C -0.496 4.496 10 H 0.098 0.902 11 C -0.145 4.145 12 N -0.366 5.366 13 Si 0.741 3.259 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.188 1.188 17 N -0.191 5.191 18 N -0.141 5.141 19 C -0.195 4.195 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.443 1.159 9.102 9.186 hybrid contribution 1.473 -1.137 0.824 2.035 sum 1.917 0.022 9.926 10.109 Atomic orbital electron populations 1.21664 0.94151 1.01859 1.01306 1.19335 0.95541 0.97156 0.88606 0.90837 1.21708 0.95315 1.00889 0.97512 1.21848 0.97214 0.99604 0.98098 1.21349 0.96666 0.97403 0.84364 1.45841 1.30829 1.37344 1.08164 1.21437 0.96226 0.95567 0.77523 1.18104 1.16123 1.21479 0.93879 0.90233 1.25758 0.95994 0.96390 0.96315 1.69962 1.29372 1.33309 1.03952 0.86197 0.80669 0.80507 0.78552 1.19509 1.20097 1.18803 1.75819 1.09988 1.12513 1.20774 1.73838 1.22852 1.18646 0.98720 1.23554 0.97074 1.02047 0.96780 0.93183 0.91618 0.92988 0.91429 0.91711 0.91366 0.90683 0.90689 0.91951 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.13 37.16 0.34 -1.78 15 2 C 0.01 0.26 3.12 -91.45 -0.29 -0.03 15 3 H 0.07 1.25 8.14 -51.93 -0.42 0.82 15 4 C -0.12 -1.67 5.28 -26.43 -0.14 -1.81 15 5 C -0.13 -1.86 5.94 -26.49 -0.16 -2.02 15 6 C 0.13 2.34 6.78 -4.02 -0.03 2.31 15 7 N -0.52 -12.72 3.17 -113.03 -0.36 -13.07 15 8 C 0.34 9.73 7.55 -155.73 -1.18 8.55 15 9 C -0.46 -12.54 9.18 -38.12 -0.35 -12.89 15 10 H 0.08 2.00 7.81 -52.49 -0.41 1.59 15 11 C 0.08 2.12 5.50 -17.29 -0.10 2.03 15 12 N -0.74 -21.18 11.96 55.56 0.66 -20.52 15 13 Si 0.92 19.17 29.56 -169.99 -5.03 14.14 15 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 15 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 16 H -0.26 -5.34 7.11 56.52 0.40 -4.93 15 17 N -0.35 -10.81 10.56 31.11 0.33 -10.48 15 18 N -0.30 -8.57 12.12 32.88 0.40 -8.17 15 19 C 0.07 1.71 7.08 -154.68 -1.10 0.61 15 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.06 0.96 8.09 -51.93 -0.42 0.54 15 25 H 0.07 1.00 8.12 -51.93 -0.42 0.58 15 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.07 1.33 8.14 -51.93 -0.42 0.90 15 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 15 29 H 0.28 7.14 8.29 -40.82 -0.34 6.80 15 LS Contribution 245.70 15.07 3.70 3.70 Total: -1.00 -33.68 245.70 -7.04 -40.73 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -3.77 Total: -1.31 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.99 Total: -5.02 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 1.03 Total: -52.24 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -33.68 -7.04 -40.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261056273.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.703 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds