Wall clock time and date at job start Mon Mar 30 2020 02:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.72103 * 2 1 4 4 C 1.53438 * 109.72664 * 120.63300 * 2 1 3 5 5 C 1.53141 * 109.31606 * 168.45973 * 4 2 1 6 6 C 1.53333 * 109.53822 * 290.60239 * 5 4 2 7 7 N 1.46228 * 108.72759 * 50.19683 * 6 5 4 8 8 C 1.37046 * 128.76855 * 162.93601 * 7 6 5 9 9 C 1.40135 * 126.77401 * 0.15209 * 8 7 6 10 10 H 1.07993 * 119.99772 * 0.02562 * 9 8 7 11 11 C 1.40237 * 119.99784 * 179.97438 * 9 8 7 12 12 N 1.30682 * 120.00463 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99752 * 180.02562 * 11 9 8 14 14 H 1.48509 * 109.46937 * 90.00586 * 13 11 9 15 15 H 1.48497 * 109.47427 * 210.00058 * 13 11 9 16 16 H 1.48496 * 109.47424 * 330.00660 * 13 11 9 17 17 N 1.33315 * 106.45604 * 180.15374 * 8 7 6 18 18 N 1.28854 * 109.41351 * 359.94928 * 17 8 7 19 19 C 1.30738 * 110.06187 * 359.97438 * 18 17 8 20 20 H 1.09001 * 109.47002 * 299.36701 * 1 2 3 21 21 H 1.08993 * 109.46955 * 59.37138 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.36967 * 1 2 3 23 23 H 1.09004 * 109.49990 * 288.40706 * 4 2 1 24 24 H 1.08999 * 109.50046 * 48.46774 * 4 2 1 25 25 H 1.08995 * 109.46428 * 50.62523 * 5 4 2 26 26 H 1.08998 * 109.46176 * 170.59844 * 5 4 2 27 27 H 1.09002 * 109.59697 * 169.97089 * 6 5 4 28 28 H 1.08996 * 109.59750 * 290.42753 * 6 5 4 29 29 H 0.97001 * 120.00187 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8979 1.0260 0.0000 4 6 2.0480 -0.7359 1.2428 5 6 3.5518 -0.9841 1.0945 6 6 3.7938 -2.0246 -0.0055 7 7 3.0509 -1.6261 -1.2003 8 6 3.2094 -2.0551 -2.4922 9 6 4.1401 -2.9945 -2.9560 10 1 4.8277 -3.4598 -2.2653 11 6 4.1779 -3.3311 -4.3169 12 7 3.3456 -2.7684 -5.1526 13 14 5.4181 -4.5838 -4.9351 14 1 4.8230 -5.9429 -4.8706 15 1 5.7816 -4.2689 -6.3400 16 1 6.6355 -4.5357 -4.0861 17 7 2.3035 -1.4025 -3.2207 18 7 1.6213 -0.6212 -2.4561 19 6 2.0391 -0.7247 -1.2217 20 1 -0.3633 0.5040 0.8956 21 1 -0.3633 0.5235 -0.8842 22 1 -0.3633 -1.0276 -0.0113 23 1 1.8654 -0.1274 2.1285 24 1 1.5295 -1.6894 1.3434 25 1 4.0493 -0.0517 0.8281 26 1 3.9537 -1.3534 2.0380 27 1 4.8582 -2.0723 -0.2358 28 1 3.4465 -3.0010 0.3321 29 1 3.3720 -3.0010 -6.0939 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261056273.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:51 Heat of formation + Delta-G solvation = 28.799852 kcal Electronic energy + Delta-G solvation = -13660.475008 eV Core-core repulsion = 11389.919462 eV Total energy + Delta-G solvation = -2270.555546 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.89560 -37.94201 -35.65234 -34.73138 -31.63985 -30.70404 -27.52275 -27.32791 -23.61935 -23.10055 -22.35925 -19.92029 -18.98305 -17.39726 -16.71039 -16.38751 -15.65586 -15.23478 -14.99872 -14.54005 -14.32025 -13.59751 -13.28231 -12.97086 -12.92878 -12.69948 -12.36368 -12.07601 -11.94861 -11.72770 -11.64372 -11.30517 -11.24593 -10.33090 -10.23628 -9.52609 -8.48864 -6.57696 1.31467 1.40017 1.57094 1.77183 2.17944 2.45465 2.58113 3.39368 3.69438 3.81877 3.89278 3.97242 4.37043 4.47642 4.54736 4.74109 4.79642 4.88040 4.94810 4.98515 5.12667 5.16573 5.23226 5.39765 5.42005 5.46696 5.86447 6.27336 6.41390 6.83305 7.11185 8.48375 8.85669 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.051377 B = 0.010227 C = 0.008758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.861923 B = 2737.303942 C = 3196.416913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.007 3.993 3 H 0.088 0.912 4 C -0.109 4.109 5 C -0.121 4.121 6 C 0.111 3.889 7 N -0.525 5.525 8 C 0.304 3.696 9 C -0.483 4.483 10 H 0.096 0.904 11 C 0.028 3.972 12 N -0.796 5.796 13 Si 1.006 2.994 14 H -0.261 1.261 15 H -0.271 1.271 16 H -0.248 1.248 17 N -0.405 5.405 18 N -0.360 5.360 19 C 0.096 3.904 20 H 0.097 0.903 21 H 0.042 0.958 22 H 0.037 0.963 23 H 0.114 0.886 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.539 0.253 13.479 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.014 4.014 3 H 0.107 0.893 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.012 4.012 7 N -0.224 5.224 8 C 0.056 3.944 9 C -0.523 4.523 10 H 0.114 0.886 11 C -0.192 4.192 12 N -0.422 5.422 13 Si 0.824 3.176 14 H -0.186 1.186 15 H -0.196 1.196 16 H -0.171 1.171 17 N -0.249 5.249 18 N -0.198 5.198 19 C -0.172 4.172 20 H 0.115 0.885 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.133 0.867 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.139 0.861 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.613 0.780 12.067 12.199 hybrid contribution 1.045 -0.927 0.051 1.398 sum 2.658 -0.147 12.118 12.407 Atomic orbital electron populations 1.21623 0.92893 1.01298 1.02554 1.19786 0.96667 0.97591 0.87380 0.89347 1.21738 0.94893 1.01092 0.97004 1.21896 0.97516 0.98220 0.98234 1.21864 0.96250 0.99593 0.83481 1.46207 1.30971 1.36627 1.08611 1.21859 0.96658 0.96382 0.79453 1.18607 1.16634 1.21950 0.95123 0.88557 1.26985 0.97921 0.98302 0.95988 1.70126 1.31899 1.35593 1.04552 0.84881 0.77713 0.77027 0.77942 1.18580 1.19571 1.17143 1.75657 1.11771 1.14315 1.23156 1.73714 1.24810 1.20506 1.00814 1.24867 0.94975 0.99870 0.97530 0.88478 0.93899 0.94365 0.86742 0.92018 0.91569 0.86077 0.90401 0.90868 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.13 71.98 0.66 -3.13 15 2 C 0.01 0.22 3.12 -11.33 -0.04 0.18 15 3 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 4 C -0.11 -2.64 5.28 30.79 0.16 -2.47 15 5 C -0.12 -2.94 5.94 30.75 0.18 -2.76 15 6 C 0.11 3.86 6.78 86.54 0.59 4.44 15 7 N -0.53 -25.73 3.17 -511.53 -1.62 -27.36 15 8 C 0.30 18.18 7.55 133.69 1.01 19.19 15 9 C -0.48 -27.24 9.18 23.22 0.21 -27.03 15 10 H 0.10 4.85 7.81 -2.91 -0.02 4.83 15 11 C 0.03 1.49 5.50 85.35 0.47 1.96 15 12 N -0.80 -47.57 11.96 21.88 0.26 -47.31 15 13 Si 1.01 39.62 29.56 68.60 2.03 41.65 15 14 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 15 H -0.27 -10.33 7.11 99.48 0.71 -9.62 15 16 H -0.25 -9.04 7.11 99.48 0.71 -8.33 15 17 N -0.40 -26.68 10.56 -55.48 -0.59 -27.27 15 18 N -0.36 -21.46 12.12 -49.87 -0.60 -22.07 15 19 C 0.10 4.67 7.08 137.96 0.98 5.64 15 20 H 0.10 2.03 8.14 -2.39 -0.02 2.01 15 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.04 1.23 8.14 -2.39 -0.02 1.21 15 23 H 0.11 1.82 8.14 -2.38 -0.02 1.80 15 24 H 0.06 1.56 8.09 -2.39 -0.02 1.54 15 25 H 0.07 1.67 8.12 -2.39 -0.02 1.65 15 26 H 0.12 1.93 8.14 -2.39 -0.02 1.91 15 27 H 0.08 2.63 8.14 -2.39 -0.02 2.62 15 28 H 0.07 2.37 8.14 -2.39 -0.02 2.35 15 29 H 0.28 15.20 8.29 -92.71 -0.77 14.43 15 Total: -1.00 -79.72 245.70 4.84 -74.88 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.14 Total: 11.44 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 4.22 Total: -3.97 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -2.55 Total: -124.00 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -79.72 4.84 -74.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261056273.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.684 kcal (2) G-P(sol) polarization free energy of solvation -79.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds