Wall clock time and date at job start Mon Mar 30 2020 02:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.71119 * 2 1 4 4 C 1.53418 * 109.75065 * 239.37654 * 2 1 3 5 5 C 1.53158 * 109.13108 * 191.77809 * 4 2 1 6 6 C 1.53206 * 109.53853 * 69.47405 * 5 4 2 7 7 N 1.46746 * 108.85344 * 309.26850 * 6 5 4 8 8 N 1.28526 * 127.13491 * 197.44217 * 7 6 5 9 9 C 1.32725 * 108.53240 * 179.90545 * 8 7 6 10 10 C 1.41392 * 126.13013 * 180.02562 * 9 8 7 11 11 H 1.08006 * 120.00147 * 180.02562 * 10 9 8 12 12 C 1.39882 * 120.00241 * 0.02562 * 10 9 8 13 13 N 1.30861 * 119.99713 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00033 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46972 * 90.00236 * 14 12 10 16 16 H 1.48503 * 109.46968 * 210.00129 * 14 12 10 17 17 H 1.48496 * 109.47619 * 330.00218 * 14 12 10 18 18 N 1.35252 * 107.73797 * 0.27359 * 9 8 7 19 19 C 1.30215 * 107.15283 * 359.61329 * 18 9 8 20 20 H 1.09002 * 109.47424 * 299.40442 * 1 2 3 21 21 H 1.08999 * 109.47338 * 59.40698 * 1 2 3 22 22 H 1.08999 * 109.47403 * 179.40241 * 1 2 3 23 23 H 1.09001 * 109.52842 * 311.67002 * 4 2 1 24 24 H 1.08997 * 109.52862 * 71.88328 * 4 2 1 25 25 H 1.08997 * 109.45958 * 189.49393 * 5 4 2 26 26 H 1.08999 * 109.45759 * 309.47010 * 5 4 2 27 27 H 1.08998 * 109.57452 * 69.08051 * 6 5 4 28 28 H 1.09000 * 109.57182 * 189.33850 * 6 5 4 29 29 H 0.96998 * 120.00098 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0484 -0.7355 -1.2426 5 6 3.5512 -0.9865 -1.0867 6 6 3.7855 -2.0290 0.0113 7 7 3.0455 -1.6265 1.2129 8 7 3.2250 -2.0502 2.4130 9 6 2.3562 -1.4406 3.2100 10 6 2.2297 -1.6303 4.6054 11 1 1.4841 -1.0796 5.1598 12 6 3.0701 -2.5310 5.2679 13 7 3.9739 -3.1978 4.5963 14 14 2.9025 -2.7820 7.1114 15 1 1.9336 -3.8758 7.3759 16 1 4.2244 -3.1423 7.6841 17 1 2.4162 -1.5274 7.7396 18 7 1.6098 -0.6098 2.4471 19 6 2.0390 -0.7231 1.2230 20 1 -0.3634 0.5046 0.8953 21 1 -0.3634 0.5230 -0.8846 22 1 -0.3634 -1.0276 -0.0107 23 1 1.5287 -1.6881 -1.3454 24 1 1.8709 -0.1250 -2.1279 25 1 3.9576 -1.3540 -2.0289 26 1 4.0486 -0.0554 -0.8152 27 1 3.4303 -3.0022 -0.3274 28 1 4.8500 -2.0873 0.2383 29 1 4.5569 -3.8222 5.0557 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064886.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:47 Heat of formation + Delta-G solvation = 68.823940 kcal Electronic energy + Delta-G solvation = -13587.568951 eV Core-core repulsion = 11318.748980 eV Total energy + Delta-G solvation = -2268.819971 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.33944 -36.56689 -33.53080 -32.98893 -29.97766 -28.77768 -26.66823 -25.36214 -21.87693 -21.78621 -20.25701 -18.57087 -16.71527 -15.59733 -15.24439 -14.66903 -14.28132 -13.78881 -13.56600 -13.02502 -12.58903 -12.21672 -11.63242 -11.20681 -11.11774 -11.00358 -10.90490 -10.76179 -10.58452 -10.24699 -10.02984 -9.51099 -9.15215 -8.43379 -8.16658 -7.41954 -6.26961 -4.17535 3.20133 3.27569 3.33245 3.48820 3.92363 4.23218 4.50095 4.86410 4.89332 5.01001 5.13673 5.57611 5.67307 5.75783 5.80022 5.85908 5.90673 5.96222 6.01503 6.20353 6.25306 6.47241 6.65294 6.96475 7.32703 7.61193 8.28944 8.49344 8.70454 9.06604 9.28637 10.47598 10.74218 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.056161 B = 0.009484 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.443043 B = 2951.577943 C = 3373.720859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.001 3.999 3 H 0.082 0.918 4 C -0.119 4.119 5 C -0.133 4.133 6 C 0.137 3.863 7 N -0.341 5.341 8 N -0.346 5.346 9 C 0.316 3.684 10 C -0.436 4.436 11 H 0.083 0.917 12 C 0.072 3.928 13 N -0.784 5.784 14 Si 0.913 3.087 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.265 1.265 18 N -0.547 5.547 19 C 0.169 3.831 20 H 0.068 0.932 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 2.876 -10.622 11.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.020 4.020 3 H 0.100 0.900 4 C -0.157 4.157 5 C -0.171 4.171 6 C 0.013 3.987 7 N -0.137 5.137 8 N -0.182 5.182 9 C 0.055 3.945 10 C -0.478 4.478 11 H 0.101 0.899 12 C -0.146 4.146 13 N -0.414 5.414 14 Si 0.739 3.261 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.189 1.189 18 N -0.277 5.277 19 C -0.107 4.107 20 H 0.087 0.913 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.709 2.443 -10.320 10.628 hybrid contribution 0.117 -0.238 0.644 0.696 sum -0.592 2.205 -9.676 9.942 Atomic orbital electron populations 1.21650 0.93583 1.02011 1.01735 1.19568 0.96229 0.97716 0.88481 0.89981 1.21753 0.95258 1.01122 0.97536 1.21890 0.97351 0.99658 0.98222 1.21460 0.97132 0.97713 0.82354 1.47158 1.27069 1.32056 1.07437 1.75332 1.27929 1.27213 0.87678 1.20970 0.88552 0.90024 0.94917 1.18192 1.18170 1.23165 0.88265 0.89855 1.25708 0.94266 0.94744 0.99906 1.69977 1.15199 1.19819 1.36401 0.86250 0.77829 0.79224 0.82845 1.19912 1.20684 1.18894 1.71088 1.29704 1.26876 1.00004 1.24154 0.93632 0.97465 0.95451 0.91295 0.92916 0.92897 0.91402 0.90866 0.89927 0.91039 0.91142 0.89933 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.11 37.16 0.34 -1.67 15 2 C 0.00 0.02 3.11 -91.45 -0.28 -0.27 15 3 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 4 C -0.12 -1.55 5.30 -26.43 -0.14 -1.69 15 5 C -0.13 -1.74 5.93 -26.54 -0.16 -1.89 15 6 C 0.14 2.42 7.20 -3.80 -0.03 2.39 15 7 N -0.34 -8.31 3.75 -57.93 -0.22 -8.53 15 8 N -0.35 -10.26 10.37 30.93 0.32 -9.94 15 9 C 0.32 9.69 7.64 -157.41 -1.20 8.49 15 10 C -0.44 -13.24 9.50 -37.77 -0.36 -13.60 15 11 H 0.08 2.44 7.84 -52.48 -0.41 2.03 15 12 C 0.07 2.05 5.49 -17.35 -0.10 1.96 15 13 N -0.78 -23.15 11.94 55.54 0.66 -22.49 15 14 Si 0.91 20.88 29.56 -169.99 -5.02 15.85 15 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 17 H -0.26 -5.93 7.11 56.52 0.40 -5.53 15 18 N -0.55 -15.28 11.32 -9.84 -0.11 -15.39 15 19 C 0.17 3.97 7.02 -155.36 -1.09 2.88 15 20 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 15 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.07 0.91 8.09 -51.93 -0.42 0.49 15 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.07 0.95 8.11 -51.93 -0.42 0.53 15 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 28 H 0.08 1.43 8.14 -51.93 -0.42 1.01 15 29 H 0.27 7.23 8.30 -40.82 -0.34 6.89 15 LS Contribution 246.03 15.07 3.71 3.71 Total: -1.00 -35.25 246.03 -7.45 -42.70 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -3.77 Total: -2.51 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -3.02 Total: -3.40 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.66 Total: -56.35 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -35.25 -7.45 -42.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064886.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.526 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds