Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.70687 * 2 1 4 4 C 1.53420 * 109.71056 * 120.59452 * 2 1 3 5 5 C 1.53159 * 109.12925 * 168.20500 * 4 2 1 6 6 C 1.53201 * 109.53716 * 290.52760 * 5 4 2 7 7 N 1.46740 * 108.85418 * 50.73447 * 6 5 4 8 8 N 1.28530 * 127.13574 * 162.55933 * 7 6 5 9 9 C 1.32725 * 108.53613 * 180.09116 * 8 7 6 10 10 C 1.41399 * 126.13196 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99698 * 174.31998 * 10 9 8 12 12 C 1.39864 * 120.00044 * 354.32235 * 10 9 8 13 13 N 1.30860 * 120.00260 * 6.03069 * 12 10 9 14 14 Si 1.86806 * 119.99985 * 186.03829 * 12 10 9 15 15 H 1.48497 * 109.47288 * 94.98117 * 14 12 10 16 16 H 1.48496 * 109.46973 * 214.98196 * 14 12 10 17 17 H 1.48494 * 109.46777 * 334.97727 * 14 12 10 18 18 N 1.35257 * 107.73477 * 359.96831 * 9 8 7 19 19 C 1.30219 * 107.15487 * 359.97438 * 18 9 8 20 20 H 1.08997 * 109.47353 * 299.40777 * 1 2 3 21 21 H 1.09007 * 109.46794 * 59.40785 * 1 2 3 22 22 H 1.08997 * 109.46830 * 179.40338 * 1 2 3 23 23 H 1.09001 * 109.52781 * 288.09814 * 4 2 1 24 24 H 1.08997 * 109.52545 * 48.23910 * 4 2 1 25 25 H 1.09001 * 109.45935 * 50.54533 * 5 4 2 26 26 H 1.08990 * 109.45996 * 170.52133 * 5 4 2 27 27 H 1.08996 * 109.57250 * 170.54295 * 6 5 4 28 28 H 1.08996 * 109.57647 * 290.92279 * 6 5 4 29 29 H 0.96995 * 119.99963 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0475 -0.7351 1.2432 5 6 3.5502 -0.9870 1.0882 6 6 3.7843 -2.0302 -0.0091 7 7 3.0451 -1.6280 -1.2112 8 7 3.2250 -2.0525 -2.4110 9 6 2.3568 -1.4430 -3.2088 10 6 2.2308 -1.6333 -4.6042 11 1 1.4282 -1.1531 -5.1444 12 6 3.1454 -2.4435 -5.2849 13 7 4.0452 -3.1189 -4.6166 14 14 3.0827 -2.5613 -7.1482 15 1 4.0413 -1.5926 -7.7380 16 1 3.4474 -3.9376 -7.5697 17 1 1.7095 -2.2473 -7.6180 18 7 1.6142 -0.6072 -2.4476 19 6 2.0390 -0.7242 -1.2222 20 1 -0.3634 0.5046 0.8952 21 1 -0.3633 0.5230 -0.8847 22 1 -0.3633 -1.0276 -0.0107 23 1 1.8699 -0.1239 2.1281 24 1 1.5262 -1.6867 1.3471 25 1 4.0483 -0.0563 0.8166 26 1 3.9559 -1.3544 2.0307 27 1 4.8486 -2.0878 -0.2371 28 1 3.4284 -3.0031 0.3299 29 1 4.6792 -3.6810 -5.0886 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064888.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = 68.728746 kcal Electronic energy + Delta-G solvation = -13586.529477 eV Core-core repulsion = 11317.705378 eV Total energy + Delta-G solvation = -2268.824099 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.34168 -36.56865 -33.53304 -32.99062 -29.97980 -28.78253 -26.66948 -25.36301 -21.87895 -21.78781 -20.25879 -18.56929 -16.72073 -15.60012 -15.24699 -14.66278 -14.28446 -13.79164 -13.56722 -13.02771 -12.59078 -12.22539 -11.63780 -11.21117 -11.11272 -11.01251 -10.90830 -10.75906 -10.59193 -10.25062 -10.02003 -9.51352 -9.14217 -8.43574 -8.16915 -7.41995 -6.27616 -4.17541 3.19788 3.27809 3.33527 3.48579 3.92114 4.23219 4.49965 4.86321 4.89330 5.00744 5.13633 5.57399 5.66616 5.75147 5.79541 5.85755 5.90818 5.95785 6.01730 6.20235 6.25098 6.47022 6.65052 6.96512 7.32675 7.61110 8.28882 8.49084 8.70552 9.06576 9.28495 10.47200 10.73826 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.056236 B = 0.009480 C = 0.008293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.779146 B = 2952.747542 C = 3375.467030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.001 3.999 3 H 0.082 0.918 4 C -0.119 4.119 5 C -0.133 4.133 6 C 0.137 3.863 7 N -0.341 5.341 8 N -0.347 5.347 9 C 0.316 3.684 10 C -0.436 4.436 11 H 0.084 0.916 12 C 0.073 3.927 13 N -0.784 5.784 14 Si 0.913 3.087 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.264 1.264 18 N -0.547 5.547 19 C 0.169 3.831 20 H 0.052 0.948 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 2.924 10.637 11.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.020 4.020 3 H 0.100 0.900 4 C -0.157 4.157 5 C -0.171 4.171 6 C 0.013 3.987 7 N -0.137 5.137 8 N -0.182 5.182 9 C 0.055 3.945 10 C -0.479 4.479 11 H 0.102 0.898 12 C -0.146 4.146 13 N -0.414 5.414 14 Si 0.738 3.262 15 H -0.200 1.200 16 H -0.207 1.207 17 H -0.188 1.188 18 N -0.276 5.276 19 C -0.107 4.107 20 H 0.071 0.929 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.687 2.496 10.334 10.653 hybrid contribution 0.194 -0.145 -0.658 0.701 sum -0.494 2.350 9.676 9.970 Atomic orbital electron populations 1.21650 0.93584 1.02083 1.01646 1.19568 0.96233 0.97709 0.88488 0.89981 1.21753 0.95256 1.01136 0.97527 1.21889 0.97351 0.99652 0.98234 1.21466 0.97132 0.97721 0.82345 1.47157 1.26944 1.32219 1.07402 1.75329 1.28325 1.26872 0.87663 1.20976 0.88623 0.89956 0.94896 1.18194 1.13056 1.28425 0.88177 0.89829 1.25701 0.94605 0.94217 1.00047 1.69985 1.13971 1.21068 1.36329 0.86241 0.79268 0.77650 0.83030 1.19993 1.20680 1.18844 1.71095 1.30053 1.26496 1.00006 1.24152 0.93701 0.97422 0.95422 0.92911 0.91339 0.92876 0.90874 0.91394 0.91043 0.89927 0.89930 0.91110 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.11 37.16 0.34 -1.67 15 2 C 0.00 0.02 3.12 -91.45 -0.28 -0.27 15 3 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 4 C -0.12 -1.55 5.30 -26.43 -0.14 -1.69 15 5 C -0.13 -1.74 5.93 -26.54 -0.16 -1.89 15 6 C 0.14 2.42 7.20 -3.81 -0.03 2.39 15 7 N -0.34 -8.31 3.75 -57.94 -0.22 -8.53 15 8 N -0.35 -10.27 10.40 30.93 0.32 -9.95 15 9 C 0.32 9.69 7.64 -157.40 -1.20 8.49 15 10 C -0.44 -13.26 9.49 -37.77 -0.36 -13.62 15 11 H 0.08 2.45 7.85 -52.48 -0.41 2.04 15 12 C 0.07 2.07 5.49 -17.36 -0.10 1.98 15 13 N -0.78 -23.14 11.96 55.54 0.66 -22.47 15 14 Si 0.91 20.88 29.56 -169.99 -5.03 15.86 15 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 17 H -0.26 -5.92 7.11 56.52 0.40 -5.52 15 18 N -0.55 -15.27 11.32 -9.84 -0.11 -15.38 15 19 C 0.17 3.97 7.01 -155.36 -1.09 2.88 15 20 H 0.05 0.62 8.14 -51.93 -0.42 0.19 15 21 H 0.07 1.15 8.14 -51.92 -0.42 0.73 15 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.07 0.91 8.08 -51.93 -0.42 0.49 15 25 H 0.07 0.95 8.12 -51.93 -0.42 0.53 15 26 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 27 H 0.08 1.43 8.14 -51.93 -0.42 1.01 15 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 29 H 0.27 7.22 8.30 -40.82 -0.34 6.88 15 LS Contribution 246.07 15.07 3.71 3.71 Total: -1.00 -35.25 246.07 -7.45 -42.70 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -3.77 Total: -2.54 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -3.02 Total: -3.40 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.66 Total: -56.33 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -35.25 -7.45 -42.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064888.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.429 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds