Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.70687 * 2 1 4 4 C 1.53420 * 109.71056 * 120.59452 * 2 1 3 5 5 C 1.53159 * 109.12925 * 168.20500 * 4 2 1 6 6 C 1.53201 * 109.53716 * 290.52760 * 5 4 2 7 7 N 1.46740 * 108.85418 * 50.73447 * 6 5 4 8 8 N 1.28530 * 127.13574 * 162.55933 * 7 6 5 9 9 C 1.32725 * 108.53613 * 180.09116 * 8 7 6 10 10 C 1.41399 * 126.13196 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99698 * 174.31998 * 10 9 8 12 12 C 1.39864 * 120.00044 * 354.32235 * 10 9 8 13 13 N 1.30860 * 120.00260 * 6.03069 * 12 10 9 14 14 Si 1.86806 * 119.99985 * 186.03829 * 12 10 9 15 15 H 1.48497 * 109.47288 * 94.98117 * 14 12 10 16 16 H 1.48496 * 109.46973 * 214.98196 * 14 12 10 17 17 H 1.48494 * 109.46777 * 334.97727 * 14 12 10 18 18 N 1.35257 * 107.73477 * 359.96831 * 9 8 7 19 19 C 1.30219 * 107.15487 * 359.97438 * 18 9 8 20 20 H 1.08997 * 109.47353 * 299.40777 * 1 2 3 21 21 H 1.09007 * 109.46794 * 59.40785 * 1 2 3 22 22 H 1.08997 * 109.46830 * 179.40338 * 1 2 3 23 23 H 1.09001 * 109.52781 * 288.09814 * 4 2 1 24 24 H 1.08997 * 109.52545 * 48.23910 * 4 2 1 25 25 H 1.09001 * 109.45935 * 50.54533 * 5 4 2 26 26 H 1.08990 * 109.45996 * 170.52133 * 5 4 2 27 27 H 1.08996 * 109.57250 * 170.54295 * 6 5 4 28 28 H 1.08996 * 109.57647 * 290.92279 * 6 5 4 29 29 H 0.96995 * 119.99963 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0475 -0.7351 1.2432 5 6 3.5502 -0.9870 1.0882 6 6 3.7843 -2.0302 -0.0091 7 7 3.0451 -1.6280 -1.2112 8 7 3.2250 -2.0525 -2.4110 9 6 2.3568 -1.4430 -3.2088 10 6 2.2308 -1.6333 -4.6042 11 1 1.4282 -1.1531 -5.1444 12 6 3.1454 -2.4435 -5.2849 13 7 4.0452 -3.1189 -4.6166 14 14 3.0827 -2.5613 -7.1482 15 1 4.0413 -1.5926 -7.7380 16 1 3.4474 -3.9376 -7.5697 17 1 1.7095 -2.2473 -7.6180 18 7 1.6142 -0.6072 -2.4476 19 6 2.0390 -0.7242 -1.2222 20 1 -0.3634 0.5046 0.8952 21 1 -0.3633 0.5230 -0.8847 22 1 -0.3633 -1.0276 -0.0107 23 1 1.8699 -0.1239 2.1281 24 1 1.5262 -1.6867 1.3471 25 1 4.0483 -0.0563 0.8166 26 1 3.9559 -1.3544 2.0307 27 1 4.8486 -2.0878 -0.2371 28 1 3.4284 -3.0031 0.3299 29 1 4.6792 -3.6810 -5.0886 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261064888.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = 44.373926 kcal Electronic energy + Delta-G solvation = -13587.585581 eV Core-core repulsion = 11317.705378 eV Total energy + Delta-G solvation = -2269.880203 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.26422 -37.95998 -35.34756 -34.89889 -31.59690 -30.72861 -28.33508 -27.07422 -23.39232 -23.23337 -22.26285 -20.15898 -18.72494 -17.42663 -16.89943 -16.48310 -15.77305 -15.30389 -15.03623 -14.36242 -14.25098 -13.61145 -13.14007 -12.95947 -12.77315 -12.62741 -12.37745 -12.25248 -11.96759 -11.90540 -11.65536 -11.23272 -11.16310 -10.42026 -10.27918 -9.48671 -8.40293 -6.40972 1.37958 1.39819 1.56662 1.63265 2.27528 2.33334 2.39251 3.51884 3.54870 3.71339 3.81829 3.86886 4.30980 4.40952 4.50404 4.64770 4.77172 4.87115 4.90175 5.02928 5.08511 5.19892 5.25559 5.36025 5.45359 5.50501 6.28597 6.43918 6.63547 6.94855 7.10962 8.40043 8.63477 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.056236 B = 0.009480 C = 0.008293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.779146 B = 2952.747542 C = 3375.467030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.004 4.004 3 H 0.098 0.902 4 C -0.111 4.111 5 C -0.122 4.122 6 C 0.119 3.881 7 N -0.350 5.350 8 N -0.386 5.386 9 C 0.278 3.722 10 C -0.480 4.480 11 H 0.076 0.924 12 C 0.025 3.975 13 N -0.821 5.821 14 Si 0.998 3.002 15 H -0.264 1.264 16 H -0.266 1.266 17 H -0.259 1.259 18 N -0.589 5.589 19 C 0.178 3.822 20 H 0.100 0.900 21 H 0.042 0.958 22 H 0.038 0.962 23 H 0.122 0.878 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.130 0.870 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 3.460 12.459 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.025 4.025 3 H 0.116 0.884 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.002 4.002 7 N -0.146 5.146 8 N -0.221 5.221 9 C 0.017 3.983 10 C -0.521 4.521 11 H 0.094 0.906 12 C -0.190 4.190 13 N -0.451 5.451 14 Si 0.819 3.181 15 H -0.189 1.189 16 H -0.191 1.191 17 H -0.182 1.182 18 N -0.319 5.319 19 C -0.098 4.098 20 H 0.119 0.881 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.140 0.860 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.148 0.852 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.623 3.026 12.209 12.594 hybrid contribution 0.180 -0.294 -1.065 1.120 sum -0.443 2.732 11.144 11.482 Atomic orbital electron populations 1.21619 0.92491 1.01479 1.02790 1.20017 0.97172 0.98173 0.87091 0.88377 1.21797 0.94661 1.01445 0.96974 1.21945 0.97841 0.98085 0.98081 1.22063 0.96385 1.00259 0.81486 1.47575 1.27529 1.31949 1.07502 1.75134 1.29013 1.28154 0.89843 1.21389 0.89854 0.91252 0.95827 1.18537 1.14306 1.30250 0.89028 0.90553 1.26742 0.93400 0.92881 1.05939 1.70093 1.14613 1.21497 1.38889 0.84970 0.79592 0.78371 0.75205 1.18921 1.19101 1.18237 1.71040 1.31366 1.27529 1.01963 1.25364 0.92100 0.96042 0.96291 0.88142 0.93861 0.94264 0.85976 0.91589 0.91123 0.85157 0.90293 0.90067 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.11 71.98 0.66 -2.92 15 2 C 0.00 -0.12 3.12 -11.33 -0.04 -0.15 15 3 H 0.10 2.79 8.14 -2.39 -0.02 2.77 15 4 C -0.11 -2.39 5.30 30.79 0.16 -2.23 15 5 C -0.12 -2.69 5.93 30.71 0.18 -2.51 15 6 C 0.12 4.07 7.20 86.40 0.62 4.70 15 7 N -0.35 -17.30 3.75 -337.23 -1.26 -18.56 15 8 N -0.39 -23.78 10.40 -56.04 -0.58 -24.36 15 9 C 0.28 17.95 7.64 134.76 1.03 18.98 15 10 C -0.48 -30.59 9.49 23.44 0.22 -30.37 15 11 H 0.08 4.74 7.85 -2.91 -0.02 4.72 15 12 C 0.03 1.48 5.49 85.23 0.47 1.95 15 13 N -0.82 -49.98 11.96 21.81 0.26 -49.72 15 14 Si 1.00 43.81 29.56 68.60 2.03 45.84 15 15 H -0.26 -11.09 7.11 99.48 0.71 -10.39 15 16 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 17 H -0.26 -10.97 7.11 99.48 0.71 -10.27 15 18 N -0.59 -34.21 11.32 -185.03 -2.10 -36.31 15 19 C 0.18 8.44 7.01 138.21 0.97 9.41 15 20 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 21 H 0.04 1.43 8.14 -2.38 -0.02 1.41 15 22 H 0.04 1.20 8.14 -2.39 -0.02 1.18 15 23 H 0.12 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.07 1.49 8.08 -2.39 -0.02 1.47 15 25 H 0.07 1.62 8.12 -2.39 -0.02 1.60 15 26 H 0.13 1.74 8.14 -2.39 -0.02 1.73 15 27 H 0.08 2.72 8.14 -2.39 -0.02 2.70 15 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 15 29 H 0.28 15.17 8.30 -92.71 -0.77 14.40 15 Total: -1.00 -82.92 246.07 3.76 -79.16 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.13 Total: 7.08 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.28 Total: -3.14 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -3.68 Total: -128.95 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -82.92 3.76 -79.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064888.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.536 kcal (2) G-P(sol) polarization free energy of solvation -82.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds