Wall clock time and date at job start Mon Mar 30 2020 02:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52751 * 2 1 4 4 C 1.53156 * 109.52988 * 120.14174 * 2 1 3 5 5 C 1.53201 * 109.54707 * 189.43746 * 4 2 1 6 6 N 1.46740 * 108.85586 * 309.29069 * 5 4 2 7 7 N 1.28527 * 127.13872 * 197.41024 * 6 5 4 8 8 C 1.32728 * 108.53989 * 179.97438 * 7 6 5 9 9 C 1.41386 * 126.13184 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00144 * 179.97438 * 9 8 7 11 11 C 1.39878 * 120.00221 * 359.95209 * 9 8 7 12 12 N 1.30862 * 119.99676 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00068 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47192 * 89.99964 * 13 11 9 15 15 H 1.48498 * 109.46997 * 209.99687 * 13 11 9 16 16 H 1.48492 * 109.47421 * 329.99826 * 13 11 9 17 17 N 1.35253 * 107.73418 * 0.02562 * 8 7 6 18 18 C 1.30221 * 107.15364 * 0.02562 * 17 8 7 19 19 C 1.50916 * 127.51407 * 179.97438 * 18 17 8 20 20 H 1.08996 * 109.47170 * 299.99948 * 1 2 3 21 21 H 1.08995 * 109.47283 * 59.99851 * 1 2 3 22 22 H 1.09001 * 109.47073 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.45541 * 309.45232 * 4 2 1 24 24 H 1.08994 * 109.46197 * 69.42171 * 4 2 1 25 25 H 1.08998 * 109.57218 * 69.10579 * 5 4 2 26 26 H 1.08997 * 109.56812 * 189.48337 * 5 4 2 27 27 H 0.97001 * 119.99862 * 180.02562 * 12 11 9 28 28 H 1.09000 * 109.70925 * 76.11135 * 19 18 17 29 29 H 1.08999 * 109.71270 * 315.47555 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0420 -0.7248 1.2483 5 6 3.5556 -0.5236 1.3732 6 7 4.1867 -0.8660 0.0935 7 7 5.4285 -1.1239 -0.1149 8 6 5.5943 -1.3862 -1.4054 9 6 6.8142 -1.7174 -2.0388 10 1 6.8356 -1.9132 -3.1007 11 6 7.9935 -1.7912 -1.2902 12 7 7.9678 -1.5531 -0.0037 13 14 9.6053 -2.2282 -2.1272 14 1 10.2730 -0.9867 -2.5943 15 1 10.4884 -2.9326 -1.1633 16 1 9.3358 -3.1125 -3.2892 17 7 4.3871 -1.2797 -2.0059 18 6 3.5260 -0.9594 -1.0830 19 6 2.0445 -0.7252 -1.2498 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.5478 -0.3199 2.1315 24 1 1.8230 -1.7893 1.1656 25 1 3.7666 0.5175 1.6175 26 1 3.9464 -1.1713 2.1579 27 1 8.7856 -1.6039 0.5154 28 1 1.5310 -1.6806 -1.3572 29 1 1.8666 -0.1103 -2.1321 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261069247.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:54 Heat of formation + Delta-G solvation = 67.783545 kcal Electronic energy + Delta-G solvation = -13459.480494 eV Core-core repulsion = 11190.615408 eV Total energy + Delta-G solvation = -2268.865086 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.32485 -36.94760 -33.35703 -32.66758 -30.00622 -29.14890 -26.73794 -25.29952 -22.88748 -20.96336 -20.15154 -18.67687 -16.69805 -15.72552 -15.09883 -14.62667 -14.37952 -13.93952 -13.50936 -13.14889 -12.71594 -12.20046 -12.04486 -11.38875 -11.16417 -10.99087 -10.88203 -10.72649 -10.60708 -10.30377 -10.02516 -9.56215 -9.15623 -8.44177 -8.18515 -7.41960 -6.27279 -4.17980 3.20076 3.27519 3.33243 3.47655 3.92439 4.23070 4.49349 4.77646 4.81880 4.90048 5.17864 5.47734 5.58787 5.67916 5.73935 5.76524 5.86676 5.95642 5.98214 6.09739 6.15874 6.22466 6.45913 6.93221 7.31880 7.60773 8.28615 8.48093 8.70117 9.05869 9.28138 10.46625 10.73835 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.079454 B = 0.008265 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.320480 B = 3386.998343 C = 3686.401736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.127 4.127 5 C 0.137 3.863 6 N -0.340 5.340 7 N -0.346 5.346 8 C 0.316 3.684 9 C -0.436 4.436 10 H 0.084 0.916 11 C 0.072 3.928 12 N -0.784 5.784 13 Si 0.914 3.086 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.265 1.265 17 N -0.551 5.551 18 C 0.164 3.836 19 C -0.020 4.020 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.268 0.732 28 H 0.077 0.923 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.084 2.563 3.580 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.166 4.166 5 C 0.014 3.986 6 N -0.137 5.137 7 N -0.181 5.181 8 C 0.056 3.944 9 C -0.478 4.478 10 H 0.102 0.898 11 C -0.146 4.146 12 N -0.414 5.414 13 Si 0.739 3.261 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.189 1.189 17 N -0.281 5.281 18 C -0.112 4.112 19 C -0.059 4.059 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.546 2.526 3.945 11.539 hybrid contribution 0.663 -0.125 -0.142 0.690 sum -9.882 2.401 3.803 10.858 Atomic orbital electron populations 1.21787 0.94463 1.01958 1.01744 1.21252 0.95811 0.99954 0.94568 0.90701 1.21958 0.94128 1.01830 0.98652 1.21468 0.91617 1.01120 0.84428 1.47157 1.06702 1.52651 1.07156 1.75328 0.93721 1.29859 1.19216 1.20978 0.91311 0.96621 0.85520 1.18195 0.88307 1.45801 0.95498 0.89828 1.25707 1.00230 0.94017 0.94656 1.69979 1.28224 1.36971 1.06185 0.86243 0.81255 0.79017 0.79596 1.19903 1.20673 1.18892 1.71116 1.01207 1.25308 1.30505 1.24207 0.96349 1.05997 0.84637 1.20006 0.87235 1.00804 0.97903 0.92606 0.92380 0.92490 0.89932 0.91005 0.91099 0.89873 0.92150 0.90438 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.18 37.16 0.34 -1.03 15 2 C -0.10 -1.26 2.75 -90.34 -0.25 -1.51 15 3 H 0.07 1.01 8.12 -51.93 -0.42 0.59 15 4 C -0.13 -1.66 5.23 -26.55 -0.14 -1.80 15 5 C 0.14 2.41 7.20 -3.81 -0.03 2.39 15 6 N -0.34 -8.29 3.75 -57.94 -0.22 -8.51 15 7 N -0.35 -10.27 10.37 30.93 0.32 -9.95 15 8 C 0.32 9.76 7.64 -157.41 -1.20 8.56 15 9 C -0.44 -13.29 9.50 -37.77 -0.36 -13.65 15 10 H 0.08 2.46 7.84 -52.49 -0.41 2.04 15 11 C 0.07 2.06 5.49 -17.35 -0.10 1.97 15 12 N -0.78 -23.14 11.94 55.54 0.66 -22.47 15 13 Si 0.91 20.89 29.56 -169.99 -5.02 15.86 15 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 16 H -0.26 -5.94 7.11 56.52 0.40 -5.53 15 17 N -0.55 -15.63 11.43 -9.83 -0.11 -15.74 15 18 C 0.16 3.89 7.67 -155.35 -1.19 2.69 15 19 C -0.02 -0.33 5.64 -27.58 -0.16 -0.48 15 20 H 0.05 0.46 8.14 -51.93 -0.42 0.04 15 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 15 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 15 23 H 0.08 0.81 8.12 -51.93 -0.42 0.39 15 24 H 0.07 0.96 8.12 -51.93 -0.42 0.54 15 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.08 1.44 8.14 -51.93 -0.42 1.01 15 27 H 0.27 7.22 8.30 -40.82 -0.34 6.88 15 28 H 0.08 1.19 8.11 -51.93 -0.42 0.77 15 29 H 0.08 1.31 8.14 -51.93 -0.42 0.88 15 LS Contribution 246.13 15.07 3.71 3.71 Total: -1.00 -35.47 246.13 -7.51 -42.97 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -3.77 Total: -3.01 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.08 Total: -2.87 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.65 Total: -56.67 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -35.47 -7.51 -42.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261069247.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.758 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds