Wall clock time and date at job start Mon Mar 30 2020 02:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52751 * 2 1 4 4 C 1.53156 * 109.52988 * 120.14174 * 2 1 3 5 5 C 1.53201 * 109.54707 * 189.43746 * 4 2 1 6 6 N 1.46740 * 108.85586 * 309.29069 * 5 4 2 7 7 N 1.28527 * 127.13872 * 197.41024 * 6 5 4 8 8 C 1.32728 * 108.53989 * 179.97438 * 7 6 5 9 9 C 1.41386 * 126.13184 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00144 * 179.97438 * 9 8 7 11 11 C 1.39878 * 120.00221 * 359.95209 * 9 8 7 12 12 N 1.30862 * 119.99676 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00068 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47192 * 89.99964 * 13 11 9 15 15 H 1.48498 * 109.46997 * 209.99687 * 13 11 9 16 16 H 1.48492 * 109.47421 * 329.99826 * 13 11 9 17 17 N 1.35253 * 107.73418 * 0.02562 * 8 7 6 18 18 C 1.30221 * 107.15364 * 0.02562 * 17 8 7 19 19 C 1.50916 * 127.51407 * 179.97438 * 18 17 8 20 20 H 1.08996 * 109.47170 * 299.99948 * 1 2 3 21 21 H 1.08995 * 109.47283 * 59.99851 * 1 2 3 22 22 H 1.09001 * 109.47073 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.45541 * 309.45232 * 4 2 1 24 24 H 1.08994 * 109.46197 * 69.42171 * 4 2 1 25 25 H 1.08998 * 109.57218 * 69.10579 * 5 4 2 26 26 H 1.08997 * 109.56812 * 189.48337 * 5 4 2 27 27 H 0.97001 * 119.99862 * 180.02562 * 12 11 9 28 28 H 1.09000 * 109.70925 * 76.11135 * 19 18 17 29 29 H 1.08999 * 109.71270 * 315.47555 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0420 -0.7248 1.2483 5 6 3.5556 -0.5236 1.3732 6 7 4.1867 -0.8660 0.0935 7 7 5.4285 -1.1239 -0.1149 8 6 5.5943 -1.3862 -1.4054 9 6 6.8142 -1.7174 -2.0388 10 1 6.8356 -1.9132 -3.1007 11 6 7.9935 -1.7912 -1.2902 12 7 7.9678 -1.5531 -0.0037 13 14 9.6053 -2.2282 -2.1272 14 1 10.2730 -0.9867 -2.5943 15 1 10.4884 -2.9326 -1.1633 16 1 9.3358 -3.1125 -3.2892 17 7 4.3871 -1.2797 -2.0059 18 6 3.5260 -0.9594 -1.0830 19 6 2.0445 -0.7252 -1.2498 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.5478 -0.3199 2.1315 24 1 1.8230 -1.7893 1.1656 25 1 3.7666 0.5175 1.6175 26 1 3.9464 -1.1713 2.1579 27 1 8.7856 -1.6039 0.5154 28 1 1.5310 -1.6806 -1.3572 29 1 1.8666 -0.1103 -2.1321 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261069247.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:54 Heat of formation + Delta-G solvation = 43.560461 kcal Electronic energy + Delta-G solvation = -13460.530886 eV Core-core repulsion = 11190.615408 eV Total energy + Delta-G solvation = -2269.915478 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.26714 -38.25214 -35.35807 -34.48196 -31.67825 -30.77462 -28.49781 -26.88877 -24.37140 -22.66254 -21.89339 -20.23557 -18.71901 -17.50500 -16.82915 -16.47464 -15.67018 -15.31734 -14.92352 -14.82004 -14.23327 -13.29622 -13.23061 -13.01952 -12.86858 -12.63900 -12.54306 -12.14106 -11.94141 -11.79200 -11.63474 -11.29326 -11.17542 -10.44308 -10.32151 -9.49822 -8.40036 -6.41915 1.38570 1.40306 1.56713 1.60261 2.26791 2.32786 2.37676 3.51703 3.53048 3.70282 3.77792 3.82068 4.31827 4.43024 4.51674 4.71238 4.78273 4.80923 4.89826 4.99922 5.11126 5.15034 5.25350 5.36999 5.49119 5.50485 6.27634 6.41133 6.62040 6.92908 7.09770 8.37854 8.63216 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.079454 B = 0.008265 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.320480 B = 3386.998343 C = 3686.401736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.116 4.116 5 C 0.121 3.879 6 N -0.347 5.347 7 N -0.383 5.383 8 C 0.279 3.721 9 C -0.479 4.479 10 H 0.077 0.923 11 C 0.025 3.975 12 N -0.820 5.820 13 Si 0.999 3.001 14 H -0.263 1.263 15 H -0.267 1.267 16 H -0.259 1.259 17 N -0.596 5.596 18 C 0.172 3.828 19 C -0.020 4.020 20 H 0.077 0.923 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.128 0.872 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.276 0.724 28 H 0.095 0.905 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.512 2.896 4.243 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.089 0.911 4 C -0.154 4.154 5 C 0.000 4.000 6 N -0.143 5.143 7 N -0.219 5.219 8 C 0.017 3.983 9 C -0.521 4.521 10 H 0.095 0.905 11 C -0.190 4.190 12 N -0.450 5.450 13 Si 0.819 3.181 14 H -0.188 1.188 15 H -0.191 1.191 16 H -0.183 1.183 17 N -0.327 5.327 18 C -0.103 4.103 19 C -0.060 4.060 20 H 0.096 0.904 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.146 0.854 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.016 2.874 4.645 13.199 hybrid contribution 0.979 -0.185 -0.281 1.035 sum -11.037 2.689 4.364 12.169 Atomic orbital electron populations 1.21729 0.91033 1.03000 1.03295 1.21254 0.98378 0.98945 0.92317 0.91050 1.22008 0.90426 1.02253 1.00707 1.22048 0.94593 1.01644 0.81733 1.47562 1.05540 1.51691 1.09506 1.75139 0.96845 1.30858 1.19087 1.21405 0.92545 0.97825 0.86513 1.18552 0.89854 1.47984 0.95700 0.90468 1.26751 1.03955 0.93003 0.95263 1.70087 1.29805 1.37285 1.07839 0.84969 0.75463 0.79113 0.78511 1.18750 1.19098 1.18316 1.71061 1.01353 1.27760 1.32524 1.25353 0.98718 1.02681 0.83592 1.20376 0.82506 1.02511 1.00567 0.90372 0.91633 0.91703 0.85385 0.91066 0.89976 0.90057 0.91409 0.88686 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.18 71.98 0.66 -1.27 15 2 C -0.09 -2.04 2.75 -10.61 -0.03 -2.06 15 3 H 0.07 1.70 8.12 -2.39 -0.02 1.68 15 4 C -0.12 -2.64 5.23 30.71 0.16 -2.48 15 5 C 0.12 4.13 7.20 86.40 0.62 4.75 15 6 N -0.35 -17.16 3.75 -337.21 -1.26 -18.42 15 7 N -0.38 -23.61 10.37 -56.05 -0.58 -24.20 15 8 C 0.28 18.01 7.64 134.76 1.03 19.04 15 9 C -0.48 -30.55 9.50 23.44 0.22 -30.32 15 10 H 0.08 4.78 7.84 -2.91 -0.02 4.76 15 11 C 0.03 1.48 5.49 85.23 0.47 1.94 15 12 N -0.82 -49.75 11.94 21.81 0.26 -49.49 15 13 Si 1.00 43.62 29.56 68.60 2.03 45.65 15 14 H -0.26 -10.94 7.11 99.48 0.71 -10.23 15 15 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 16 H -0.26 -10.96 7.11 99.48 0.71 -10.26 15 17 N -0.60 -35.03 11.43 -185.03 -2.12 -37.15 15 18 C 0.17 8.25 7.67 138.21 1.06 9.31 15 19 C -0.02 -0.63 5.64 30.04 0.17 -0.46 15 20 H 0.08 0.85 8.14 -2.39 -0.02 0.83 15 21 H 0.06 0.89 8.14 -2.39 -0.02 0.87 15 22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 15 23 H 0.13 1.84 8.12 -2.38 -0.02 1.82 15 24 H 0.07 1.67 8.12 -2.39 -0.02 1.65 15 25 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 26 H 0.08 2.78 8.14 -2.39 -0.02 2.76 15 27 H 0.28 15.13 8.30 -92.71 -0.77 14.36 15 28 H 0.09 2.70 8.11 -2.39 -0.02 2.68 15 29 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 Total: -1.00 -82.09 246.13 3.83 -78.27 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.13 Total: 6.88 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 4.36 Total: -1.55 kcal Atomic # 7 Polarization: -125.56 SS G_CDS: -3.70 Total: -129.26 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -82.09 3.83 -78.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261069247.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.829 kcal (2) G-P(sol) polarization free energy of solvation -82.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds