Wall clock time and date at job start Mon Mar 30 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09011 * 109.49695 * 2 1 4 4 C 1.53147 * 109.52452 * 239.92759 * 2 1 3 5 5 C 1.53330 * 109.54071 * 170.62772 * 4 2 1 6 6 N 1.46219 * 108.72966 * 50.17885 * 5 4 2 7 7 C 1.37052 * 128.76740 * 162.99605 * 6 5 4 8 8 C 1.40126 * 126.77506 * 0.05779 * 7 6 5 9 9 H 1.08008 * 119.99896 * 350.92503 * 8 7 6 10 10 C 1.40240 * 120.00165 * 170.92033 * 8 7 6 11 11 N 1.30687 * 119.99972 * 340.23838 * 10 8 7 12 12 Si 1.86804 * 119.99862 * 160.23622 * 10 8 7 13 13 H 1.48500 * 109.47224 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47133 * 240.00093 * 12 10 8 15 15 H 1.48504 * 109.46916 * 120.00075 * 12 10 8 16 16 N 1.33326 * 106.45208 * 180.32579 * 7 6 5 17 17 N 1.28855 * 109.41811 * 359.56806 * 16 7 6 18 18 C 1.30746 * 110.05538 * 0.40080 * 17 16 7 19 19 C 1.50888 * 128.20914 * 179.87538 * 18 17 16 20 20 H 1.09003 * 109.46587 * 299.93043 * 1 2 3 21 21 H 1.09002 * 109.47364 * 59.92808 * 1 2 3 22 22 H 1.08995 * 109.46725 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.45308 * 290.65726 * 4 2 1 24 24 H 1.08997 * 109.45741 * 50.62273 * 4 2 1 25 25 H 1.09003 * 109.61996 * 290.39289 * 5 4 2 26 26 H 1.08995 * 109.57057 * 169.93952 * 5 4 2 27 27 H 0.96993 * 119.99957 * 354.16677 * 11 10 8 28 28 H 1.09004 * 109.72755 * 283.61458 * 19 18 17 29 29 H 1.09003 * 109.72516 * 44.28605 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0276 0.0000 4 6 2.0419 -0.7233 -1.2491 5 6 3.5570 -0.5231 -1.3730 6 7 4.1807 -0.8554 -0.0929 7 6 5.4968 -1.1276 0.1754 8 6 6.5542 -1.1450 -0.7440 9 1 6.3508 -1.0745 -1.8024 10 6 7.8766 -1.2539 -0.2898 11 7 8.1688 -0.9557 0.9486 12 14 9.2202 -1.8252 -1.4551 13 1 8.6334 -2.0976 -2.7917 14 1 9.8413 -3.0653 -0.9245 15 1 10.2542 -0.7660 -1.5755 16 7 5.5716 -1.3784 1.4827 17 7 4.4005 -1.2659 2.0082 18 6 3.5250 -0.9524 1.0892 19 6 2.0422 -0.7247 1.2517 20 1 -0.3632 0.5128 0.8907 21 1 -0.3634 0.5149 -0.8893 22 1 -0.3632 -1.0276 -0.0005 23 1 1.8214 -1.7878 -1.1682 24 1 1.5487 -0.3165 -2.1319 25 1 3.7695 0.5161 -1.6243 26 1 3.9493 -1.1773 -2.1515 27 1 7.4898 -0.5792 1.5299 28 1 1.5323 -1.6823 1.3570 29 1 1.8588 -0.1105 2.1334 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261085863.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:56 Heat of formation + Delta-G solvation = 40.790822 kcal Electronic energy + Delta-G solvation = -13592.249909 eV Core-core repulsion = 11322.214330 eV Total energy + Delta-G solvation = -2270.035578 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.14155 -36.96815 -33.82275 -32.94699 -29.81228 -28.95628 -26.63506 -24.83970 -23.25482 -20.95985 -20.28612 -18.65657 -17.71903 -15.44046 -15.09963 -14.38385 -14.11728 -13.97797 -13.81624 -13.17530 -12.77119 -12.19442 -12.14916 -11.97807 -11.40711 -11.03736 -10.71707 -10.64107 -10.53084 -10.36524 -9.99661 -9.62200 -9.13217 -8.63506 -8.61807 -7.64767 -7.01314 -4.57345 3.13926 3.21924 3.39433 3.54757 3.93157 4.18920 4.41834 4.82481 4.87622 4.94613 5.27804 5.32169 5.52017 5.63846 5.73406 5.78091 5.89870 5.97163 6.02410 6.13557 6.19428 6.26857 6.50533 6.95653 7.03115 7.60943 7.89683 7.95193 8.34058 8.75616 9.00887 10.33884 10.62249 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.058912 B = 0.009364 C = 0.008281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.168640 B = 2989.387249 C = 3380.248486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.124 4.124 5 C 0.129 3.871 6 N -0.522 5.522 7 C 0.333 3.667 8 C -0.515 4.515 9 H 0.077 0.923 10 C 0.044 3.956 11 N -0.777 5.777 12 Si 1.082 2.918 13 H -0.280 1.280 14 H -0.275 1.275 15 H -0.279 1.279 16 N -0.413 5.413 17 N -0.293 5.293 18 C 0.073 3.927 19 C -0.006 4.006 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.317 0.683 28 H 0.069 0.931 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.204 2.015 -6.839 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.162 4.162 5 C 0.004 3.996 6 N -0.222 5.222 7 C 0.091 3.909 8 C -0.556 4.556 9 H 0.095 0.905 10 C -0.183 4.183 11 N -0.404 5.404 12 Si 0.906 3.094 13 H -0.205 1.205 14 H -0.200 1.200 15 H -0.205 1.205 16 N -0.261 5.261 17 N -0.132 5.132 18 C -0.193 4.193 19 C -0.046 4.046 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.134 0.866 28 H 0.088 0.912 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.063 1.306 -5.447 9.817 hybrid contribution -2.210 0.717 -1.293 2.659 sum -10.273 2.023 -6.739 12.452 Atomic orbital electron populations 1.21795 0.94711 1.01833 1.01617 1.21224 0.95498 0.99873 0.94777 0.90967 1.21920 0.94490 1.01475 0.98328 1.21347 0.92277 1.00595 0.85378 1.45709 1.08550 1.60499 1.07483 1.21530 0.82013 0.94046 0.93319 1.19277 0.90774 1.52028 0.93504 0.90463 1.26836 0.99173 0.93729 0.98586 1.70069 1.41448 1.22581 1.06261 0.83405 0.74249 0.77488 0.74236 1.20501 1.20029 1.20452 1.75271 1.12435 1.34084 1.04286 1.73661 0.97142 1.15413 1.27000 1.23623 0.96351 1.15499 0.83861 1.19807 0.87158 1.00127 0.97467 0.92472 0.92720 0.92588 0.91339 0.90532 0.91818 0.90670 0.86624 0.91223 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.17 37.16 0.34 -1.16 15 2 C -0.09 -1.33 2.74 -90.32 -0.25 -1.58 15 3 H 0.07 1.07 8.12 -51.92 -0.42 0.64 15 4 C -0.12 -1.77 5.24 -26.48 -0.14 -1.90 15 5 C 0.13 2.36 6.80 -4.02 -0.03 2.34 15 6 N -0.52 -12.68 3.17 -113.04 -0.36 -13.04 15 7 C 0.33 9.55 7.30 -155.72 -1.14 8.42 15 8 C -0.52 -14.26 9.11 -38.12 -0.35 -14.60 15 9 H 0.08 1.98 7.90 -52.48 -0.41 1.56 15 10 C 0.04 1.19 5.42 -17.29 -0.09 1.10 15 11 N -0.78 -22.90 13.29 55.56 0.74 -22.16 15 12 Si 1.08 22.52 29.98 -169.99 -5.10 17.42 15 13 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 15 H -0.28 -5.56 7.11 56.52 0.40 -5.15 15 16 N -0.41 -12.71 9.88 31.11 0.31 -12.40 15 17 N -0.29 -8.32 12.21 32.89 0.40 -7.92 15 18 C 0.07 1.76 7.76 -154.67 -1.20 0.56 15 19 C -0.01 -0.10 5.64 -27.57 -0.16 -0.26 15 20 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 23 H 0.07 1.00 8.12 -51.93 -0.42 0.58 15 24 H 0.08 0.85 8.12 -51.93 -0.42 0.43 15 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 26 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 27 H 0.32 9.91 6.27 -40.82 -0.26 9.65 15 28 H 0.07 1.13 8.11 -51.93 -0.42 0.71 15 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 LS Contribution 244.53 15.07 3.69 3.69 Total: -1.00 -33.53 244.53 -7.02 -40.55 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -3.69 Total: 0.96 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -3.01 Total: -7.09 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 1.09 Total: -55.52 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.10 Total: 17.42 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -33.53 -7.02 -40.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085863.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.337 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds