Wall clock time and date at job start Mon Mar 30 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09011 * 109.49695 * 2 1 4 4 C 1.53147 * 109.52452 * 239.92759 * 2 1 3 5 5 C 1.53330 * 109.54071 * 170.62772 * 4 2 1 6 6 N 1.46219 * 108.72966 * 50.17885 * 5 4 2 7 7 C 1.37052 * 128.76740 * 162.99605 * 6 5 4 8 8 C 1.40126 * 126.77506 * 0.05779 * 7 6 5 9 9 H 1.08008 * 119.99896 * 350.92503 * 8 7 6 10 10 C 1.40240 * 120.00165 * 170.92033 * 8 7 6 11 11 N 1.30687 * 119.99972 * 340.23838 * 10 8 7 12 12 Si 1.86804 * 119.99862 * 160.23622 * 10 8 7 13 13 H 1.48500 * 109.47224 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47133 * 240.00093 * 12 10 8 15 15 H 1.48504 * 109.46916 * 120.00075 * 12 10 8 16 16 N 1.33326 * 106.45208 * 180.32579 * 7 6 5 17 17 N 1.28855 * 109.41811 * 359.56806 * 16 7 6 18 18 C 1.30746 * 110.05538 * 0.40080 * 17 16 7 19 19 C 1.50888 * 128.20914 * 179.87538 * 18 17 16 20 20 H 1.09003 * 109.46587 * 299.93043 * 1 2 3 21 21 H 1.09002 * 109.47364 * 59.92808 * 1 2 3 22 22 H 1.08995 * 109.46725 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.45308 * 290.65726 * 4 2 1 24 24 H 1.08997 * 109.45741 * 50.62273 * 4 2 1 25 25 H 1.09003 * 109.61996 * 290.39289 * 5 4 2 26 26 H 1.08995 * 109.57057 * 169.93952 * 5 4 2 27 27 H 0.96993 * 119.99957 * 354.16677 * 11 10 8 28 28 H 1.09004 * 109.72755 * 283.61458 * 19 18 17 29 29 H 1.09003 * 109.72516 * 44.28605 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0276 0.0000 4 6 2.0419 -0.7233 -1.2491 5 6 3.5570 -0.5231 -1.3730 6 7 4.1807 -0.8554 -0.0929 7 6 5.4968 -1.1276 0.1754 8 6 6.5542 -1.1450 -0.7440 9 1 6.3508 -1.0745 -1.8024 10 6 7.8766 -1.2539 -0.2898 11 7 8.1688 -0.9557 0.9486 12 14 9.2202 -1.8252 -1.4551 13 1 8.6334 -2.0976 -2.7917 14 1 9.8413 -3.0653 -0.9245 15 1 10.2542 -0.7660 -1.5755 16 7 5.5716 -1.3784 1.4827 17 7 4.4005 -1.2659 2.0082 18 6 3.5250 -0.9524 1.0892 19 6 2.0422 -0.7247 1.2517 20 1 -0.3632 0.5128 0.8907 21 1 -0.3634 0.5149 -0.8893 22 1 -0.3632 -1.0276 -0.0005 23 1 1.8214 -1.7878 -1.1682 24 1 1.5487 -0.3165 -2.1319 25 1 3.7695 0.5161 -1.6243 26 1 3.9493 -1.1773 -2.1515 27 1 7.4898 -0.5792 1.5299 28 1 1.5323 -1.6823 1.3570 29 1 1.8588 -0.1105 2.1334 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261085863.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:56 Heat of formation + Delta-G solvation = 19.220758 kcal Electronic energy + Delta-G solvation = -13593.185257 eV Core-core repulsion = 11322.214330 eV Total energy + Delta-G solvation = -2270.970926 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.10468 -38.36736 -35.85780 -34.60083 -31.54592 -30.55714 -28.21987 -26.74469 -24.68175 -22.76483 -21.95897 -20.22432 -19.64804 -17.22808 -16.76584 -15.95882 -15.79269 -15.52095 -15.28832 -14.73227 -14.21899 -13.96127 -13.38002 -13.23066 -12.78641 -12.68783 -12.18757 -11.92814 -11.86823 -11.70817 -11.63853 -11.56027 -11.07843 -10.66777 -10.53513 -9.75068 -9.14487 -6.72203 1.31705 1.53344 1.77351 1.82284 2.18477 2.37346 2.45295 3.19109 3.56476 3.69680 3.76689 3.88162 4.30442 4.39056 4.50580 4.67114 4.71857 4.77810 4.86838 4.94480 4.98246 5.11139 5.15103 5.29028 5.44236 5.62787 5.80225 5.86984 6.29970 6.73310 6.99884 8.16647 8.53762 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.058912 B = 0.009364 C = 0.008281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.168640 B = 2989.387249 C = 3380.248486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 H 0.066 0.934 4 C -0.115 4.115 5 C 0.113 3.887 6 N -0.523 5.523 7 C 0.301 3.699 8 C -0.538 4.538 9 H 0.093 0.907 10 C 0.002 3.998 11 N -0.813 5.813 12 Si 1.140 2.860 13 H -0.252 1.252 14 H -0.274 1.274 15 H -0.264 1.264 16 N -0.462 5.462 17 N -0.353 5.353 18 C 0.099 3.901 19 C -0.010 4.010 20 H 0.064 0.936 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.120 0.880 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.293 0.707 28 H 0.088 0.912 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.301 2.237 -9.252 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.108 4.108 3 H 0.084 0.916 4 C -0.152 4.152 5 C -0.009 4.009 6 N -0.222 5.222 7 C 0.056 3.944 8 C -0.579 4.579 9 H 0.111 0.889 10 C -0.217 4.217 11 N -0.439 5.439 12 Si 0.955 3.045 13 H -0.176 1.176 14 H -0.200 1.200 15 H -0.189 1.189 16 N -0.308 5.308 17 N -0.191 5.191 18 C -0.170 4.170 19 C -0.050 4.050 20 H 0.083 0.917 21 H 0.095 0.905 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.138 0.862 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.207 1.544 -7.865 12.978 hybrid contribution -1.756 0.690 -0.523 1.958 sum -11.963 2.234 -8.388 14.781 Atomic orbital electron populations 1.21731 0.91210 1.02914 1.03187 1.21228 0.98191 0.98744 0.92643 0.91581 1.21964 0.91148 1.01871 1.00264 1.21861 0.95103 1.01155 0.82825 1.46093 1.07423 1.59075 1.09604 1.21920 0.84226 0.94991 0.93233 1.19652 0.91200 1.52904 0.94135 0.88875 1.28707 1.01953 0.91971 0.99072 1.70203 1.40599 1.25543 1.07558 0.82764 0.71503 0.77236 0.72992 1.17570 1.19959 1.18883 1.75144 1.14108 1.35666 1.05923 1.73568 0.97537 1.19130 1.28866 1.24922 0.98638 1.10361 0.83059 1.20207 0.82674 1.01941 1.00133 0.91682 0.90512 0.91746 0.91378 0.86168 0.90896 0.90234 0.89227 0.89339 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.17 71.98 0.66 -1.48 15 2 C -0.09 -2.17 2.74 -10.60 -0.03 -2.20 15 3 H 0.07 1.72 8.12 -2.38 -0.02 1.70 15 4 C -0.12 -2.80 5.24 30.75 0.16 -2.64 15 5 C 0.11 3.92 6.80 86.54 0.59 4.51 15 6 N -0.52 -25.37 3.17 -511.55 -1.62 -26.99 15 7 C 0.30 17.83 7.30 133.68 0.98 18.80 15 8 C -0.54 -30.33 9.11 23.22 0.21 -30.12 15 9 H 0.09 4.74 7.90 -2.91 -0.02 4.72 15 10 C 0.00 0.14 5.42 85.35 0.46 0.60 15 11 N -0.81 -49.97 13.29 21.88 0.29 -49.68 15 12 Si 1.14 45.01 29.98 68.60 2.06 47.06 15 13 H -0.25 -8.73 7.11 99.48 0.71 -8.03 15 14 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 15 H -0.26 -9.73 7.11 99.48 0.71 -9.03 15 16 N -0.46 -29.79 9.88 -55.47 -0.55 -30.34 15 17 N -0.35 -20.80 12.21 -49.87 -0.61 -21.41 15 18 C 0.10 4.79 7.76 137.96 1.07 5.86 15 19 C -0.01 -0.33 5.64 30.05 0.17 -0.16 15 20 H 0.06 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.08 0.96 8.14 -2.39 -0.02 0.94 15 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 15 23 H 0.07 1.71 8.12 -2.38 -0.02 1.69 15 24 H 0.12 1.97 8.12 -2.39 -0.02 1.95 15 25 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 26 H 0.08 2.68 8.14 -2.39 -0.02 2.66 15 27 H 0.29 19.49 6.27 -92.71 -0.58 18.91 15 28 H 0.09 2.63 8.11 -2.39 -0.02 2.61 15 29 H 0.09 2.70 8.14 -2.39 -0.02 2.68 15 Total: -1.00 -78.29 244.53 5.16 -73.13 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.32 Total: 15.05 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 4.27 Total: -6.82 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -2.49 Total: -128.43 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.06 Total: 47.06 kcal Total: -78.29 5.16 -73.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085863.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.353 kcal (2) G-P(sol) polarization free energy of solvation -78.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds