Wall clock time and date at job start Mon Mar 30 2020 02:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.57421 * 2 1 4 4 C 1.53204 * 109.57454 * 239.74322 * 2 1 3 5 5 C 1.53156 * 109.53544 * 189.33489 * 4 2 1 6 6 C 1.53421 * 109.18397 * 69.44996 * 5 4 2 7 7 C 1.50945 * 108.20168 * 311.57980 * 6 5 4 8 8 N 1.30217 * 127.49992 * 195.72160 * 7 6 5 9 9 C 1.35254 * 107.16119 * 179.82228 * 8 7 6 10 10 C 1.41390 * 126.13344 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00021 * 174.24661 * 10 9 8 12 12 C 1.39876 * 119.99986 * 354.25426 * 10 9 8 13 13 N 1.30852 * 120.00156 * 6.01820 * 12 10 9 14 14 Si 1.86800 * 119.99771 * 186.01945 * 12 10 9 15 15 H 1.48500 * 109.47130 * 94.97997 * 14 12 10 16 16 H 1.48503 * 109.47155 * 214.97955 * 14 12 10 17 17 H 1.48502 * 109.47236 * 334.97833 * 14 12 10 18 18 N 1.32732 * 107.72861 * 0.02562 * 9 8 7 19 19 N 1.28524 * 108.54214 * 0.04031 * 18 9 8 20 20 H 1.08993 * 109.47467 * 180.25326 * 1 2 3 21 21 H 1.09001 * 109.47239 * 300.25495 * 1 2 3 22 22 H 1.09005 * 109.46872 * 60.25377 * 1 2 3 23 23 H 1.08996 * 109.45595 * 69.31502 * 4 2 1 24 24 H 1.09002 * 109.44806 * 309.34957 * 4 2 1 25 25 H 1.08993 * 109.52710 * 189.37850 * 5 4 2 26 26 H 1.08997 * 109.52630 * 309.51969 * 5 4 2 27 27 H 1.09001 * 109.71402 * 71.19047 * 6 5 4 28 28 H 1.08996 * 109.71661 * 191.83335 * 6 5 4 29 29 H 0.96998 * 120.00176 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0433 -0.7273 -1.2469 5 6 3.5569 -0.9323 -1.1335 6 6 3.8452 -1.9613 -0.0327 7 6 3.0530 -1.5752 1.1928 8 7 3.2199 -2.0023 2.4116 9 6 2.2916 -1.3884 3.1802 10 6 2.1149 -1.5616 4.5723 11 1 1.4015 -0.9513 5.1061 12 6 2.8642 -2.5232 5.2581 13 7 3.8105 -3.1802 4.6375 14 14 2.5139 -2.8696 7.0599 15 1 1.5878 -4.0251 7.1709 16 1 3.7852 -3.1851 7.7596 17 1 1.8903 -1.6739 7.6818 18 7 1.5763 -0.5942 2.3932 19 7 2.0236 -0.6978 1.1927 20 1 -0.3634 -1.0276 0.0045 21 1 -0.3634 0.5178 0.8877 22 1 -0.3633 0.5099 -0.8923 23 1 1.8229 -0.1305 -2.1318 24 1 1.5509 -1.6962 -1.3303 25 1 3.9474 -1.2962 -2.0838 26 1 4.0348 0.0144 -0.8817 27 1 3.5421 -2.9531 -0.3680 28 1 4.9098 -1.9609 0.2012 29 1 4.3298 -3.8473 5.1129 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092237.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:14 Heat of formation + Delta-G solvation = 71.211477 kcal Electronic energy + Delta-G solvation = -13597.000367 eV Core-core repulsion = 11328.283927 eV Total energy + Delta-G solvation = -2268.716440 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.32167 -36.58015 -33.33123 -32.91235 -29.78074 -29.15318 -26.50092 -25.79082 -22.00579 -21.49723 -20.21380 -18.38577 -16.87822 -15.78170 -14.95525 -14.56471 -14.21306 -13.79951 -13.61184 -12.92559 -12.53860 -12.01988 -11.98614 -11.25552 -11.16063 -11.00866 -10.89443 -10.82649 -10.68721 -10.22919 -9.97233 -9.49379 -9.15495 -8.24581 -8.06459 -7.51148 -6.24177 -4.15522 3.16647 3.27803 3.33023 3.48612 3.83778 4.24171 4.57765 4.81328 4.92459 5.04892 5.26195 5.47158 5.61113 5.73266 5.77850 5.79594 5.92190 6.00992 6.10753 6.23125 6.30967 6.44025 6.51732 6.98528 7.37821 7.61365 8.32194 8.53967 8.70987 9.16402 9.25532 10.46619 10.73602 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.055526 B = 0.009529 C = 0.008329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.150025 B = 2937.594864 C = 3361.058572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.162 3.838 3 H 0.074 0.926 4 C -0.128 4.128 5 C -0.122 4.122 6 C -0.025 4.025 7 C 0.161 3.839 8 N -0.473 5.473 9 C 0.333 3.667 10 C -0.446 4.446 11 H 0.081 0.919 12 C 0.080 3.920 13 N -0.771 5.771 14 Si 0.910 3.090 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.265 1.265 18 N -0.438 5.438 19 N -0.338 5.338 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 2.752 -10.515 10.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.058 3.942 3 H 0.092 0.908 4 C -0.167 4.167 5 C -0.160 4.160 6 C -0.065 4.065 7 C -0.115 4.115 8 N -0.200 5.200 9 C 0.073 3.927 10 C -0.488 4.488 11 H 0.100 0.900 12 C -0.140 4.140 13 N -0.399 5.399 14 Si 0.736 3.264 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.189 1.189 18 N -0.275 5.275 19 N -0.135 5.135 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.357 2.797 -10.212 10.674 hybrid contribution -0.080 -0.203 0.611 0.649 sum -1.437 2.594 -9.601 10.048 Atomic orbital electron populations 1.21945 0.93792 1.02713 1.02273 1.21098 0.95223 0.95456 0.82436 0.90761 1.21950 0.96675 1.01490 0.96559 1.21661 0.95544 0.99950 0.98863 1.19950 0.99217 0.98406 0.88952 1.24713 0.93982 0.96128 0.96706 1.71707 1.24590 1.25783 0.97933 1.20945 0.87649 0.89314 0.94790 1.18144 1.22498 1.19532 0.88596 0.90048 1.25729 0.93706 0.94952 0.99616 1.70048 1.15014 1.18356 1.36497 0.86291 0.78215 0.79266 0.82670 1.19939 1.20573 1.18881 1.74489 1.29958 1.33079 0.89988 1.46741 1.26048 1.34385 1.06332 0.92371 0.91035 0.91957 0.90123 0.90958 0.90862 0.91575 0.90490 0.89717 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.19 37.16 0.34 -1.97 15 2 C 0.16 2.76 3.72 -67.69 -0.25 2.51 15 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 4 C -0.13 -1.69 5.23 -26.55 -0.14 -1.83 15 5 C -0.12 -1.63 5.97 -26.43 -0.16 -1.79 15 6 C -0.03 -0.45 6.33 -27.55 -0.17 -0.62 15 7 C 0.16 3.93 7.67 -155.33 -1.19 2.73 15 8 N -0.47 -13.96 9.62 -9.82 -0.09 -14.06 15 9 C 0.33 10.19 7.62 -157.40 -1.20 9.00 15 10 C -0.45 -13.49 9.49 -37.77 -0.36 -13.85 15 11 H 0.08 2.38 7.85 -52.49 -0.41 1.97 15 12 C 0.08 2.28 5.49 -17.36 -0.10 2.18 15 13 N -0.77 -22.62 11.95 55.54 0.66 -21.96 15 14 Si 0.91 20.71 29.56 -169.99 -5.03 15.68 15 15 H -0.27 -6.12 7.11 56.52 0.40 -5.71 15 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 17 H -0.26 -5.91 7.11 56.52 0.40 -5.51 15 18 N -0.44 -12.28 11.76 30.93 0.36 -11.91 15 19 N -0.34 -7.99 3.53 -51.48 -0.18 -8.17 15 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.07 1.24 8.08 -51.93 -0.42 0.82 15 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.07 0.98 8.10 -51.93 -0.42 0.56 15 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.07 0.89 8.12 -51.93 -0.42 0.47 15 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 28 H 0.08 1.46 8.14 -51.93 -0.42 1.03 15 29 H 0.27 7.15 8.30 -40.82 -0.34 6.81 15 LS Contribution 245.89 15.07 3.71 3.71 Total: -1.00 -34.98 245.89 -7.56 -42.54 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -3.77 Total: -2.19 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -3.23 Total: -3.64 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.75 Total: -56.10 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -34.98 -7.56 -42.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092237.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.752 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds