Wall clock time and date at job start Mon Mar 30 2020 02:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.57421 * 2 1 4 4 C 1.53204 * 109.57454 * 239.74322 * 2 1 3 5 5 C 1.53156 * 109.53544 * 189.33489 * 4 2 1 6 6 C 1.53421 * 109.18397 * 69.44996 * 5 4 2 7 7 C 1.50945 * 108.20168 * 311.57980 * 6 5 4 8 8 N 1.30217 * 127.49992 * 195.72160 * 7 6 5 9 9 C 1.35254 * 107.16119 * 179.82228 * 8 7 6 10 10 C 1.41390 * 126.13344 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00021 * 174.24661 * 10 9 8 12 12 C 1.39876 * 119.99986 * 354.25426 * 10 9 8 13 13 N 1.30852 * 120.00156 * 6.01820 * 12 10 9 14 14 Si 1.86800 * 119.99771 * 186.01945 * 12 10 9 15 15 H 1.48500 * 109.47130 * 94.97997 * 14 12 10 16 16 H 1.48503 * 109.47155 * 214.97955 * 14 12 10 17 17 H 1.48502 * 109.47236 * 334.97833 * 14 12 10 18 18 N 1.32732 * 107.72861 * 0.02562 * 9 8 7 19 19 N 1.28524 * 108.54214 * 0.04031 * 18 9 8 20 20 H 1.08993 * 109.47467 * 180.25326 * 1 2 3 21 21 H 1.09001 * 109.47239 * 300.25495 * 1 2 3 22 22 H 1.09005 * 109.46872 * 60.25377 * 1 2 3 23 23 H 1.08996 * 109.45595 * 69.31502 * 4 2 1 24 24 H 1.09002 * 109.44806 * 309.34957 * 4 2 1 25 25 H 1.08993 * 109.52710 * 189.37850 * 5 4 2 26 26 H 1.08997 * 109.52630 * 309.51969 * 5 4 2 27 27 H 1.09001 * 109.71402 * 71.19047 * 6 5 4 28 28 H 1.08996 * 109.71661 * 191.83335 * 6 5 4 29 29 H 0.96998 * 120.00176 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0433 -0.7273 -1.2469 5 6 3.5569 -0.9323 -1.1335 6 6 3.8452 -1.9613 -0.0327 7 6 3.0530 -1.5752 1.1928 8 7 3.2199 -2.0023 2.4116 9 6 2.2916 -1.3884 3.1802 10 6 2.1149 -1.5616 4.5723 11 1 1.4015 -0.9513 5.1061 12 6 2.8642 -2.5232 5.2581 13 7 3.8105 -3.1802 4.6375 14 14 2.5139 -2.8696 7.0599 15 1 1.5878 -4.0251 7.1709 16 1 3.7852 -3.1851 7.7596 17 1 1.8903 -1.6739 7.6818 18 7 1.5763 -0.5942 2.3932 19 7 2.0236 -0.6978 1.1927 20 1 -0.3634 -1.0276 0.0045 21 1 -0.3634 0.5178 0.8877 22 1 -0.3633 0.5099 -0.8923 23 1 1.8229 -0.1305 -2.1318 24 1 1.5509 -1.6962 -1.3303 25 1 3.9474 -1.2962 -2.0838 26 1 4.0348 0.0144 -0.8817 27 1 3.5421 -2.9531 -0.3680 28 1 4.9098 -1.9609 0.2012 29 1 4.3298 -3.8473 5.1129 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092237.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:14 Heat of formation + Delta-G solvation = 47.464213 kcal Electronic energy + Delta-G solvation = -13598.030125 eV Core-core repulsion = 11328.283927 eV Total energy + Delta-G solvation = -2269.746198 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.24137 -38.00591 -35.26682 -34.61452 -31.57416 -30.98180 -28.00889 -27.66497 -23.45826 -23.05395 -22.17092 -19.95161 -18.97065 -17.43506 -16.84389 -16.36279 -15.48064 -15.36915 -15.08527 -14.51878 -13.98779 -13.49874 -13.29025 -13.13066 -12.95258 -12.51741 -12.42642 -12.28986 -11.96195 -11.87705 -11.76591 -11.24161 -11.14848 -10.26547 -10.16502 -9.54057 -8.34326 -6.36834 1.32940 1.40946 1.57356 1.61982 2.21446 2.35559 2.49701 3.55256 3.61136 3.69984 3.80943 3.91033 4.18900 4.35647 4.55130 4.68489 4.73547 4.82826 4.91574 4.98996 5.09141 5.14057 5.22104 5.33970 5.38698 5.51119 6.26975 6.51193 6.66664 7.03887 7.12263 8.40315 8.65808 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.055526 B = 0.009529 C = 0.008329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.150025 B = 2937.594864 C = 3361.058572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.140 3.860 3 H 0.087 0.913 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.027 4.027 7 C 0.157 3.843 8 N -0.528 5.528 9 C 0.293 3.707 10 C -0.489 4.489 11 H 0.073 0.927 12 C 0.033 3.967 13 N -0.808 5.808 14 Si 0.996 3.004 15 H -0.264 1.264 16 H -0.265 1.265 17 H -0.260 1.260 18 N -0.458 5.458 19 N -0.336 5.336 20 H 0.042 0.958 21 H 0.042 0.958 22 H 0.112 0.888 23 H 0.131 0.869 24 H 0.069 0.931 25 H 0.119 0.881 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 2.978 -12.427 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.039 3.961 3 H 0.104 0.896 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.067 4.067 7 C -0.119 4.119 8 N -0.256 5.256 9 C 0.032 3.968 10 C -0.531 4.531 11 H 0.091 0.909 12 C -0.184 4.184 13 N -0.436 5.436 14 Si 0.816 3.184 15 H -0.189 1.189 16 H -0.189 1.189 17 H -0.184 1.184 18 N -0.296 5.296 19 N -0.132 5.132 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.131 0.869 23 H 0.149 0.851 24 H 0.088 0.912 25 H 0.137 0.863 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.386 3.050 -12.180 12.633 hybrid contribution -0.102 -0.190 1.038 1.060 sum -1.489 2.860 -11.142 11.599 Atomic orbital electron populations 1.21915 0.92688 1.02033 1.03348 1.21844 0.96400 0.96243 0.81654 0.89550 1.22020 0.96207 1.01745 0.95807 1.21691 0.95874 0.98554 0.98934 1.20281 0.98191 1.00622 0.87604 1.25774 0.93917 0.94843 0.97376 1.71577 1.25889 1.27979 1.00178 1.21358 0.88938 0.90728 0.95757 1.18478 1.23879 1.21310 0.89441 0.90859 1.26738 0.92822 0.93838 1.05015 1.70159 1.15769 1.18767 1.38902 0.85019 0.78649 0.79212 0.75501 1.18898 1.18927 1.18414 1.74345 1.30418 1.32911 0.91894 1.47225 1.25451 1.33923 1.06581 0.93832 0.93922 0.86905 0.85076 0.91223 0.86277 0.91608 0.89203 0.89640 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.19 71.98 0.66 -3.48 15 2 C 0.14 4.48 3.72 45.02 0.17 4.65 15 3 H 0.09 2.58 8.14 -2.39 -0.02 2.56 15 4 C -0.12 -2.62 5.23 30.71 0.16 -2.46 15 5 C -0.11 -2.53 5.97 30.79 0.18 -2.34 15 6 C -0.03 -0.92 6.33 30.07 0.19 -0.73 15 7 C 0.16 7.76 7.67 138.22 1.06 8.82 15 8 N -0.53 -32.43 9.62 -184.99 -1.78 -34.21 15 9 C 0.29 18.87 7.62 134.76 1.03 19.90 15 10 C -0.49 -31.14 9.49 23.44 0.22 -30.92 15 11 H 0.07 4.54 7.85 -2.91 -0.02 4.52 15 12 C 0.03 1.91 5.49 85.24 0.47 2.38 15 13 N -0.81 -48.93 11.95 21.81 0.26 -48.67 15 14 Si 1.00 43.54 29.56 68.60 2.03 45.57 15 15 H -0.26 -11.04 7.11 99.48 0.71 -10.34 15 16 H -0.26 -10.80 7.11 99.48 0.71 -10.10 15 17 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 18 N -0.46 -26.67 11.76 -56.04 -0.66 -27.33 15 19 N -0.34 -15.97 3.53 -316.78 -1.12 -17.09 15 20 H 0.04 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.04 1.47 8.08 -2.39 -0.02 1.45 15 22 H 0.11 2.13 8.14 -2.38 -0.02 2.11 15 23 H 0.13 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.07 1.61 8.10 -2.39 -0.02 1.59 15 25 H 0.12 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.07 1.51 8.12 -2.39 -0.02 1.50 15 27 H 0.09 2.79 8.14 -2.39 -0.02 2.77 15 28 H 0.09 2.85 8.14 -2.39 -0.02 2.83 15 29 H 0.28 15.05 8.30 -92.71 -0.77 14.28 15 Total: -1.00 -82.41 245.89 4.01 -78.40 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.13 Total: 7.52 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 4.14 Total: -4.19 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -3.30 Total: -127.30 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -82.41 4.01 -78.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092237.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.865 kcal (2) G-P(sol) polarization free energy of solvation -82.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds