Wall clock time and date at job start Mon Mar 30 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.29074 * 124.57411 * 2 1 4 4 C 1.30238 * 108.40846 * 179.97438 * 3 2 1 5 5 C 1.40029 * 106.16474 * 0.10396 * 4 3 2 6 6 N 1.29069 * 124.57878 * 179.97438 * 2 1 3 7 7 C 1.50527 * 123.73929 * 179.82473 * 5 4 3 8 8 H 1.08999 * 109.72584 * 103.11032 * 7 5 4 9 9 C 1.50704 * 109.72912 * 223.78484 * 7 5 4 10 10 H 1.07998 * 120.00438 * 118.69334 * 9 7 5 11 11 C 1.37879 * 119.99461 * 298.69719 * 9 7 5 12 12 N 1.31518 * 119.99930 * 179.97438 * 11 9 7 13 13 Si 1.86794 * 120.00504 * 359.97438 * 11 9 7 14 14 H 1.48503 * 109.47102 * 89.99976 * 13 11 9 15 15 H 1.48496 * 109.47404 * 210.00239 * 13 11 9 16 16 H 1.48503 * 109.46914 * 330.00525 * 13 11 9 17 17 C 1.53470 * 108.15200 * 343.44700 * 7 5 4 18 18 C 1.53025 * 109.80386 * 50.33784 * 17 7 5 19 19 C 1.50525 * 130.09264 * 180.15395 * 4 3 2 20 20 H 1.08997 * 109.46701 * 89.97745 * 1 2 3 21 21 H 1.09000 * 109.46585 * 209.97127 * 1 2 3 22 22 H 1.08996 * 109.47011 * 329.97745 * 1 2 3 23 23 H 0.96991 * 120.00491 * 179.97438 * 12 11 9 24 24 H 1.08996 * 109.41299 * 290.23554 * 17 7 5 25 25 H 1.08994 * 109.35980 * 170.40323 * 17 7 5 26 26 H 1.09003 * 109.41273 * 168.58188 * 18 17 7 27 27 H 1.08991 * 109.42068 * 48.78493 * 18 17 7 28 28 H 1.09007 * 109.72820 * 43.71860 * 19 4 3 29 29 H 1.08997 * 109.72837 * 283.05064 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1975 1.0628 0.0000 4 6 3.4484 0.7002 0.0006 5 6 3.4484 -0.7001 -0.0015 6 7 2.1976 -1.0627 0.0005 7 6 4.7001 -1.5362 -0.0055 8 1 4.8790 -1.9355 0.9928 9 6 4.5522 -2.6689 -0.9885 10 1 5.2257 -2.7458 -1.8292 11 6 3.5569 -3.6071 -0.8144 12 7 3.4274 -4.5953 -1.6724 13 14 2.3923 -3.4745 0.6401 14 1 1.2127 -2.6579 0.2569 15 1 1.9451 -4.8324 1.0415 16 1 3.0935 -2.8276 1.7782 17 6 5.8732 -0.6387 -0.4222 18 6 5.8733 0.6388 0.4202 19 6 4.7001 1.5363 0.0039 20 1 -0.3632 0.0004 -1.0277 21 1 -0.3632 -0.8903 0.5134 22 1 -0.3633 0.8898 0.5142 23 1 2.7275 -5.2555 -1.5498 24 1 5.7734 -0.3780 -1.4758 25 1 6.8101 -1.1741 -0.2686 26 1 6.8107 1.1737 0.2671 27 1 5.7740 0.3782 1.4738 28 1 4.5934 2.3557 0.7148 29 1 4.8785 1.9356 -0.9945 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107926.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:19 Heat of formation + Delta-G solvation = 86.786072 kcal Electronic energy + Delta-G solvation = -13984.932024 eV Core-core repulsion = 11716.890949 eV Total energy + Delta-G solvation = -2268.041075 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.50155 -38.26567 -35.18201 -33.74221 -33.65910 -31.26840 -28.68208 -26.69584 -23.92295 -23.65623 -21.67411 -20.48817 -19.14164 -17.78946 -17.66570 -16.29494 -16.00406 -15.71675 -14.89619 -14.60709 -14.18580 -13.89588 -13.63261 -13.42319 -13.17270 -13.02052 -12.64027 -12.14778 -11.79123 -11.57883 -11.49828 -11.10478 -11.01905 -10.86371 -9.95801 -9.62311 -8.30120 -6.37519 0.88884 1.23460 1.47209 1.60217 1.63908 1.86888 2.48730 3.08395 3.24575 3.96544 4.15345 4.18322 4.22961 4.26007 4.46649 4.50851 4.65974 4.80437 4.82934 5.01127 5.15510 5.25085 5.30795 5.51722 5.60115 5.61217 5.71289 5.96365 6.25648 6.69774 7.34178 7.49228 8.83852 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.019613 C = 0.012584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.591266 B = 1427.317174 C = 2224.487150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.192 5.192 3 N -0.292 5.292 4 C -0.016 4.016 5 C 0.011 3.989 6 N -0.320 5.320 7 C 0.084 3.916 8 H 0.038 0.962 9 C -0.522 4.522 10 H 0.043 0.957 11 C 0.026 3.974 12 N -0.946 5.946 13 Si 0.970 3.030 14 H -0.218 1.218 15 H -0.329 1.329 16 H -0.289 1.289 17 C -0.096 4.096 18 C -0.110 4.110 19 C -0.021 4.021 20 H 0.095 0.905 21 H 0.100 0.900 22 H 0.127 0.873 23 H 0.263 0.737 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.039 13.424 5.911 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.092 5.092 3 N -0.133 5.133 4 C -0.181 4.181 5 C -0.153 4.153 6 N -0.160 5.160 7 C 0.063 3.937 8 H 0.056 0.944 9 C -0.560 4.560 10 H 0.061 0.939 11 C -0.172 4.172 12 N -0.585 5.585 13 Si 0.804 3.196 14 H -0.143 1.143 15 H -0.261 1.261 16 H -0.216 1.216 17 C -0.135 4.135 18 C -0.147 4.147 19 C -0.060 4.060 20 H 0.113 0.887 21 H 0.119 0.881 22 H 0.145 0.855 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.126 0.874 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.599 13.310 5.841 14.974 hybrid contribution 0.026 -0.858 0.139 0.869 sum -3.573 12.453 5.980 14.269 Atomic orbital electron populations 1.22409 0.68883 1.06710 1.05737 1.48759 1.09711 0.98490 1.52191 1.73407 1.03791 1.15920 1.20149 1.23569 0.94001 0.94004 1.06488 1.24307 0.94016 0.95291 1.01732 1.74083 1.05034 1.14709 1.22203 1.17873 0.87229 0.91946 0.96612 0.94401 1.21156 1.15559 1.08591 1.10720 0.93912 1.25842 0.98673 0.94073 0.98633 1.70070 1.34573 1.15368 1.38527 0.85449 0.83136 0.72479 0.78557 1.14264 1.26150 1.21555 1.21485 0.96839 0.95589 0.99539 1.21646 0.98515 0.94946 0.99633 1.20105 0.86093 0.96014 1.03759 0.88674 0.88139 0.85471 0.92815 0.93047 0.90742 0.87353 0.91794 0.87915 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.67 11.57 127.77 1.48 4.15 15 2 N -0.19 -7.63 4.37 -206.80 -0.90 -8.54 15 3 N -0.29 -11.28 12.04 -47.76 -0.57 -11.86 15 4 C -0.02 -0.62 7.20 43.19 0.31 -0.31 15 5 C 0.01 0.52 5.84 43.19 0.25 0.77 15 6 N -0.32 -15.39 5.70 -47.76 -0.27 -15.66 15 7 C 0.08 4.08 2.06 -12.18 -0.03 4.06 15 8 H 0.04 1.89 7.16 -2.39 -0.02 1.87 15 9 C -0.52 -31.10 9.12 25.60 0.23 -30.87 15 10 H 0.04 2.75 8.00 -2.91 -0.02 2.72 15 11 C 0.03 1.60 5.43 84.65 0.46 2.06 15 12 N -0.95 -61.81 13.96 21.45 0.30 -61.51 15 13 Si 0.97 51.24 23.67 68.60 1.62 52.87 15 14 H -0.22 -10.69 5.52 99.48 0.55 -10.14 15 15 H -0.33 -17.48 7.11 99.48 0.71 -16.77 15 16 H -0.29 -15.14 6.52 99.48 0.65 -14.49 15 17 C -0.10 -3.59 5.13 30.76 0.16 -3.43 15 18 C -0.11 -2.97 5.87 30.76 0.18 -2.79 15 19 C -0.02 -0.58 6.31 29.95 0.19 -0.39 15 20 H 0.09 2.22 8.14 -2.39 -0.02 2.20 15 21 H 0.10 2.52 8.07 -2.39 -0.02 2.51 15 22 H 0.13 2.42 8.14 -2.39 -0.02 2.40 15 23 H 0.26 16.24 8.31 -92.71 -0.77 15.47 15 24 H 0.05 1.99 8.08 -2.39 -0.02 1.97 15 25 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 26 H 0.11 2.09 8.14 -2.39 -0.02 2.07 15 27 H 0.06 1.73 8.11 -2.39 -0.02 1.71 15 28 H 0.10 2.30 8.14 -2.38 -0.02 2.28 15 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 Total: -1.00 -77.09 233.98 4.33 -72.76 By element: Atomic # 1 Polarization: -2.24 SS G_CDS: 0.92 Total: -1.32 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 3.24 Total: -26.75 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -1.45 Total: -97.56 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 1.62 Total: 52.87 kcal Total: -77.09 4.33 -72.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107926.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.550 kcal (2) G-P(sol) polarization free energy of solvation -77.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds