Wall clock time and date at job start Mon Mar 30 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99692 * 2 1 4 4 H 1.48499 * 109.47247 * 276.54549 * 3 2 1 5 5 H 1.48495 * 109.47272 * 36.54729 * 3 2 1 6 6 H 1.48502 * 109.46653 * 156.54409 * 3 2 1 7 7 C 1.37875 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99530 * 334.47092 * 7 2 1 9 9 C 1.50697 * 120.00341 * 154.47678 * 7 2 1 10 10 N 1.46902 * 110.43531 * 111.23209 * 9 7 2 11 11 C 1.46898 * 111.00250 * 307.17157 * 10 9 7 12 12 C 1.53000 * 117.50105 * 228.09378 * 11 10 9 13 13 C 1.52996 * 117.50348 * 159.46867 * 11 10 9 14 14 C 1.54896 * 110.59667 * 348.61888 * 9 7 2 15 15 C 1.56314 * 103.22276 * 203.74718 * 14 9 7 16 16 C 1.54262 * 103.52627 * 37.05057 * 15 14 9 17 17 H 1.08997 * 117.41257 * 196.42959 * 16 15 14 18 18 C 1.53007 * 118.19749 * 41.80012 * 16 15 14 19 19 C 1.53005 * 60.37757 * 265.44709 * 18 16 15 20 20 H 1.08993 * 119.29233 * 248.69028 * 19 18 16 21 21 H 0.97002 * 119.99970 * 0.02562 * 1 2 3 22 22 H 1.00899 * 110.99813 * 71.12740 * 10 9 7 23 23 H 1.09007 * 115.55163 * 13.79756 * 11 10 9 24 24 H 1.09001 * 117.49665 * 359.97438 * 12 11 10 25 25 H 1.08993 * 117.50149 * 145.02165 * 12 11 10 26 26 H 1.08994 * 117.50177 * 214.98396 * 13 11 10 27 27 H 1.09005 * 117.49288 * 0.02562 * 13 11 10 28 28 H 1.09004 * 110.75178 * 321.63224 * 14 9 7 29 29 H 1.08994 * 110.75993 * 84.82267 * 14 9 7 30 30 H 1.09004 * 110.78785 * 278.60337 * 15 14 9 31 31 H 1.08996 * 110.82141 * 155.51973 * 15 14 9 32 32 H 1.09001 * 117.45607 * 13.04815 * 18 16 15 33 33 H 1.08999 * 117.46193 * 157.87052 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3583 2.1263 -1.3909 5 1 1.5225 2.6088 0.8337 6 1 3.6089 1.4043 0.5573 7 6 2.0045 -1.1940 -0.0005 8 1 1.5436 -2.0838 0.4022 9 6 3.4012 -1.2575 -0.5629 10 7 4.3764 -1.4896 0.5110 11 6 4.2160 -0.5053 1.5896 12 6 5.4768 0.1952 2.1000 13 6 4.7870 -0.8631 2.9632 14 6 3.7394 0.0449 -1.3301 15 6 4.8632 -0.4044 -2.3193 16 6 4.4302 -1.8252 -2.7360 17 1 5.1804 -2.4608 -3.2063 18 6 2.9490 -2.0728 -3.0290 19 6 3.5027 -2.3641 -1.6328 20 1 3.5697 -3.3967 -1.2904 21 1 -0.4850 0.8401 -0.0004 22 1 4.3051 -2.4310 0.8669 23 1 3.2933 0.0745 1.5637 24 1 6.4254 -0.0746 1.6358 25 1 5.3838 1.2360 2.4099 26 1 4.2402 -0.5186 3.8408 27 1 5.2821 -1.8287 3.0664 28 1 2.8719 0.4030 -1.8845 29 1 4.1031 0.8124 -0.6469 30 1 5.8311 -0.4321 -1.8186 31 1 4.9006 0.2532 -3.1878 32 1 2.3064 -1.1997 -3.1428 33 1 2.6968 -2.9267 -3.6577 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130388.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:26 Heat of formation + Delta-G solvation = 84.424194 kcal Electronic energy + Delta-G solvation = -14455.718915 eV Core-core repulsion = 12291.115765 eV Total energy + Delta-G solvation = -2164.603150 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.23534 -36.56630 -33.14862 -31.46537 -29.65292 -26.85847 -23.47331 -23.07097 -21.76468 -20.13588 -19.01237 -18.45276 -16.36303 -16.17484 -15.04495 -14.65663 -14.16099 -13.26860 -12.98334 -12.71973 -12.18293 -12.00902 -11.87927 -11.15707 -10.94063 -10.91661 -10.59788 -10.33993 -10.03971 -9.70579 -9.53649 -9.26846 -9.15065 -8.68423 -8.64068 -8.43134 -7.14199 -6.24749 -4.13598 3.24266 3.31602 3.40537 4.31284 4.51216 4.59074 4.95298 5.09179 5.48349 5.59789 5.68950 5.72312 5.87924 5.90707 6.09643 6.16267 6.20641 6.32371 6.38941 6.43393 6.47152 6.55990 6.70826 6.73673 6.82227 6.96562 6.98517 7.01885 7.29951 7.57424 8.25140 8.34593 8.53687 8.88155 9.46260 10.87692 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.023377 B = 0.019859 C = 0.014314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.493492 B = 1409.568635 C = 1955.672910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.083 3.917 3 Si 0.862 3.138 4 H -0.289 1.289 5 H -0.308 1.308 6 H -0.229 1.229 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.240 3.760 10 N -0.652 5.652 11 C 0.048 3.952 12 C -0.188 4.188 13 C -0.203 4.203 14 C -0.161 4.161 15 C -0.078 4.078 16 C -0.184 4.184 17 H 0.092 0.908 18 C -0.149 4.149 19 C -0.117 4.117 20 H 0.091 0.909 21 H 0.264 0.736 22 H 0.328 0.672 23 H 0.114 0.886 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 -0.573 -0.774 8.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.122 4.122 3 Si 0.693 3.307 4 H -0.216 1.216 5 H -0.238 1.238 6 H -0.155 1.155 7 C -0.582 4.582 8 H 0.088 0.912 9 C 0.152 3.848 10 N -0.281 5.281 11 C -0.062 4.062 12 C -0.226 4.226 13 C -0.241 4.241 14 C -0.198 4.198 15 C -0.115 4.115 16 C -0.202 4.202 17 H 0.111 0.889 18 C -0.187 4.187 19 C -0.136 4.136 20 H 0.110 0.890 21 H 0.074 0.926 22 H 0.146 0.854 23 H 0.131 0.869 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.912 -0.152 -1.099 8.981 hybrid contribution -0.560 0.514 0.386 0.853 sum 8.353 0.363 -0.713 8.391 Atomic orbital electron populations 1.70110 1.06795 1.27232 1.46786 1.25159 0.94309 0.99083 0.93658 0.87972 0.81235 0.83752 0.77701 1.21640 1.23766 1.15478 1.21246 0.97995 0.96704 1.42237 0.91189 1.19063 0.89227 0.89337 0.87215 1.60604 1.53273 1.04803 1.09402 1.22552 0.95902 0.98594 0.89185 1.23065 0.98581 0.96289 1.04687 1.23116 1.05598 0.99826 0.95591 1.23504 0.97972 0.99777 0.98541 1.21942 0.98730 0.93691 0.97174 1.23047 0.92660 0.98533 1.05931 0.88948 1.22714 0.94943 1.02571 0.98474 1.22926 1.02126 0.98677 0.89903 0.89047 0.92641 0.85402 0.86904 0.89270 0.90169 0.89780 0.89472 0.90864 0.90084 0.91366 0.93391 0.89134 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.93 13.96 55.43 0.77 -25.16 16 2 C 0.08 2.30 5.02 -17.82 -0.09 2.21 16 3 Si 0.86 20.89 21.37 -169.99 -3.63 17.26 16 4 H -0.29 -7.03 6.58 56.52 0.37 -6.66 16 5 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.23 -5.14 3.49 56.52 0.20 -4.94 16 7 C -0.54 -14.56 7.90 -34.44 -0.27 -14.83 16 8 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 9 C 0.24 5.43 0.59 -131.10 -0.08 5.35 16 10 N -0.65 -13.43 6.39 -92.54 -0.59 -14.02 16 11 C 0.05 0.99 3.81 -67.72 -0.26 0.73 16 12 C -0.19 -3.31 10.23 -26.73 -0.27 -3.58 16 13 C -0.20 -3.48 10.37 -26.73 -0.28 -3.76 16 14 C -0.16 -3.57 2.96 -23.95 -0.07 -3.64 16 15 C -0.08 -1.48 6.87 -24.29 -0.17 -1.65 16 16 C -0.18 -3.38 7.02 -89.50 -0.63 -4.00 16 17 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 18 C -0.15 -2.91 9.82 -26.73 -0.26 -3.17 16 19 C -0.12 -2.42 5.98 -89.50 -0.53 -2.96 16 20 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.33 6.47 8.69 -39.29 -0.34 6.13 16 23 H 0.11 2.63 3.42 -51.93 -0.18 2.45 16 24 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.07 1.77 4.68 -51.93 -0.24 1.52 16 29 H 0.08 1.82 3.68 -51.93 -0.19 1.63 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.94 7.21 -51.93 -0.37 1.57 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 246.80 15.07 3.72 3.72 Total: -1.00 -28.23 246.80 -7.57 -35.79 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -4.92 Total: 11.71 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: -2.91 Total: -29.30 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.18 Total: -39.18 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -3.63 Total: 17.26 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.23 -7.57 -35.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130388.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.216 kcal (2) G-P(sol) polarization free energy of solvation -28.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds