Wall clock time and date at job start Mon Mar 30 2020 02:17:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86803 * 119.99692 * 2 1
4 4 H 1.48499 * 109.47247 * 276.54549 * 3 2 1
5 5 H 1.48495 * 109.47272 * 36.54729 * 3 2 1
6 6 H 1.48502 * 109.46653 * 156.54409 * 3 2 1
7 7 C 1.37875 * 120.00168 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99530 * 334.47092 * 7 2 1
9 9 C 1.50697 * 120.00341 * 154.47678 * 7 2 1
10 10 N 1.46902 * 110.43531 * 111.23209 * 9 7 2
11 11 C 1.46898 * 111.00250 * 307.17157 * 10 9 7
12 12 C 1.53000 * 117.50105 * 228.09378 * 11 10 9
13 13 C 1.52996 * 117.50348 * 159.46867 * 11 10 9
14 14 C 1.54896 * 110.59667 * 348.61888 * 9 7 2
15 15 C 1.56314 * 103.22276 * 203.74718 * 14 9 7
16 16 C 1.54262 * 103.52627 * 37.05057 * 15 14 9
17 17 H 1.08997 * 117.41257 * 196.42959 * 16 15 14
18 18 C 1.53007 * 118.19749 * 41.80012 * 16 15 14
19 19 C 1.53005 * 60.37757 * 265.44709 * 18 16 15
20 20 H 1.08993 * 119.29233 * 248.69028 * 19 18 16
21 21 H 0.97002 * 119.99970 * 0.02562 * 1 2 3
22 22 H 1.00899 * 110.99813 * 71.12740 * 10 9 7
23 23 H 1.09007 * 115.55163 * 13.79756 * 11 10 9
24 24 H 1.09001 * 117.49665 * 359.97438 * 12 11 10
25 25 H 1.08993 * 117.50149 * 145.02165 * 12 11 10
26 26 H 1.08994 * 117.50177 * 214.98396 * 13 11 10
27 27 H 1.09005 * 117.49288 * 0.02562 * 13 11 10
28 28 H 1.09004 * 110.75178 * 321.63224 * 14 9 7
29 29 H 1.08994 * 110.75993 * 84.82267 * 14 9 7
30 30 H 1.09004 * 110.78785 * 278.60337 * 15 14 9
31 31 H 1.08996 * 110.82141 * 155.51973 * 15 14 9
32 32 H 1.09001 * 117.45607 * 13.04815 * 18 16 15
33 33 H 1.08999 * 117.46193 * 157.87052 * 18 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.3583 2.1263 -1.3909
5 1 1.5225 2.6088 0.8337
6 1 3.6089 1.4043 0.5573
7 6 2.0045 -1.1940 -0.0005
8 1 1.5436 -2.0838 0.4022
9 6 3.4012 -1.2575 -0.5629
10 7 4.3764 -1.4896 0.5110
11 6 4.2160 -0.5053 1.5896
12 6 5.4768 0.1952 2.1000
13 6 4.7870 -0.8631 2.9632
14 6 3.7394 0.0449 -1.3301
15 6 4.8632 -0.4044 -2.3193
16 6 4.4302 -1.8252 -2.7360
17 1 5.1804 -2.4608 -3.2063
18 6 2.9490 -2.0728 -3.0290
19 6 3.5027 -2.3641 -1.6328
20 1 3.5697 -3.3967 -1.2904
21 1 -0.4850 0.8401 -0.0004
22 1 4.3051 -2.4310 0.8669
23 1 3.2933 0.0745 1.5637
24 1 6.4254 -0.0746 1.6358
25 1 5.3838 1.2360 2.4099
26 1 4.2402 -0.5186 3.8408
27 1 5.2821 -1.8287 3.0664
28 1 2.8719 0.4030 -1.8845
29 1 4.1031 0.8124 -0.6469
30 1 5.8311 -0.4321 -1.8186
31 1 4.9006 0.2532 -3.1878
32 1 2.3064 -1.1997 -3.1428
33 1 2.6968 -2.9267 -3.6577
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261130388.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:17:26
Heat of formation + Delta-G solvation = 84.424194 kcal
Electronic energy + Delta-G solvation = -14455.718915 eV
Core-core repulsion = 12291.115765 eV
Total energy + Delta-G solvation = -2164.603150 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 207.132 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.23534 -36.56630 -33.14862 -31.46537 -29.65292 -26.85847 -23.47331 -23.07097
-21.76468 -20.13588 -19.01237 -18.45276 -16.36303 -16.17484 -15.04495 -14.65663
-14.16099 -13.26860 -12.98334 -12.71973 -12.18293 -12.00902 -11.87927 -11.15707
-10.94063 -10.91661 -10.59788 -10.33993 -10.03971 -9.70579 -9.53649 -9.26846
-9.15065 -8.68423 -8.64068 -8.43134 -7.14199 -6.24749 -4.13598 3.24266
3.31602 3.40537 4.31284 4.51216 4.59074 4.95298 5.09179 5.48349
5.59789 5.68950 5.72312 5.87924 5.90707 6.09643 6.16267 6.20641
6.32371 6.38941 6.43393 6.47152 6.55990 6.70826 6.73673 6.82227
6.96562 6.98517 7.01885 7.29951 7.57424 8.25140 8.34593 8.53687
8.88155 9.46260 10.87692
Molecular weight = 207.13amu
Principal moments of inertia in cm(-1)
A = 0.023377 B = 0.019859 C = 0.014314
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1197.493492 B = 1409.568635 C = 1955.672910
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.874 5.874
2 C 0.083 3.917
3 Si 0.862 3.138
4 H -0.289 1.289
5 H -0.308 1.308
6 H -0.229 1.229
7 C -0.543 4.543
8 H 0.070 0.930
9 C 0.240 3.760
10 N -0.652 5.652
11 C 0.048 3.952
12 C -0.188 4.188
13 C -0.203 4.203
14 C -0.161 4.161
15 C -0.078 4.078
16 C -0.184 4.184
17 H 0.092 0.908
18 C -0.149 4.149
19 C -0.117 4.117
20 H 0.091 0.909
21 H 0.264 0.736
22 H 0.328 0.672
23 H 0.114 0.886
24 H 0.089 0.911
25 H 0.080 0.920
26 H 0.084 0.916
27 H 0.087 0.913
28 H 0.073 0.927
29 H 0.081 0.919
30 H 0.068 0.932
31 H 0.047 0.953
32 H 0.090 0.910
33 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.580 -0.573 -0.774 8.634
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.509 5.509
2 C -0.122 4.122
3 Si 0.693 3.307
4 H -0.216 1.216
5 H -0.238 1.238
6 H -0.155 1.155
7 C -0.582 4.582
8 H 0.088 0.912
9 C 0.152 3.848
10 N -0.281 5.281
11 C -0.062 4.062
12 C -0.226 4.226
13 C -0.241 4.241
14 C -0.198 4.198
15 C -0.115 4.115
16 C -0.202 4.202
17 H 0.111 0.889
18 C -0.187 4.187
19 C -0.136 4.136
20 H 0.110 0.890
21 H 0.074 0.926
22 H 0.146 0.854
23 H 0.131 0.869
24 H 0.107 0.893
25 H 0.098 0.902
26 H 0.102 0.898
27 H 0.105 0.895
28 H 0.091 0.909
29 H 0.099 0.901
30 H 0.086 0.914
31 H 0.066 0.934
32 H 0.109 0.891
33 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 8.912 -0.152 -1.099 8.981
hybrid contribution -0.560 0.514 0.386 0.853
sum 8.353 0.363 -0.713 8.391
Atomic orbital electron populations
1.70110 1.06795 1.27232 1.46786 1.25159 0.94309 0.99083 0.93658
0.87972 0.81235 0.83752 0.77701 1.21640 1.23766 1.15478 1.21246
0.97995 0.96704 1.42237 0.91189 1.19063 0.89227 0.89337 0.87215
1.60604 1.53273 1.04803 1.09402 1.22552 0.95902 0.98594 0.89185
1.23065 0.98581 0.96289 1.04687 1.23116 1.05598 0.99826 0.95591
1.23504 0.97972 0.99777 0.98541 1.21942 0.98730 0.93691 0.97174
1.23047 0.92660 0.98533 1.05931 0.88948 1.22714 0.94943 1.02571
0.98474 1.22926 1.02126 0.98677 0.89903 0.89047 0.92641 0.85402
0.86904 0.89270 0.90169 0.89780 0.89472 0.90864 0.90084 0.91366
0.93391 0.89134 0.89732
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -25.93 13.96 55.43 0.77 -25.16 16
2 C 0.08 2.30 5.02 -17.82 -0.09 2.21 16
3 Si 0.86 20.89 21.37 -169.99 -3.63 17.26 16
4 H -0.29 -7.03 6.58 56.52 0.37 -6.66 16
5 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16
6 H -0.23 -5.14 3.49 56.52 0.20 -4.94 16
7 C -0.54 -14.56 7.90 -34.44 -0.27 -14.83 16
8 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16
9 C 0.24 5.43 0.59 -131.10 -0.08 5.35 16
10 N -0.65 -13.43 6.39 -92.54 -0.59 -14.02 16
11 C 0.05 0.99 3.81 -67.72 -0.26 0.73 16
12 C -0.19 -3.31 10.23 -26.73 -0.27 -3.58 16
13 C -0.20 -3.48 10.37 -26.73 -0.28 -3.76 16
14 C -0.16 -3.57 2.96 -23.95 -0.07 -3.64 16
15 C -0.08 -1.48 6.87 -24.29 -0.17 -1.65 16
16 C -0.18 -3.38 7.02 -89.50 -0.63 -4.00 16
17 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16
18 C -0.15 -2.91 9.82 -26.73 -0.26 -3.17 16
19 C -0.12 -2.42 5.98 -89.50 -0.53 -2.96 16
20 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16
21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
22 H 0.33 6.47 8.69 -39.29 -0.34 6.13 16
23 H 0.11 2.63 3.42 -51.93 -0.18 2.45 16
24 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16
25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
26 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16
27 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16
28 H 0.07 1.77 4.68 -51.93 -0.24 1.52 16
29 H 0.08 1.82 3.68 -51.93 -0.19 1.63 16
30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16
32 H 0.09 1.94 7.21 -51.93 -0.37 1.57 16
33 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16
LS Contribution 246.80 15.07 3.72 3.72
Total: -1.00 -28.23 246.80 -7.57 -35.79
By element:
Atomic # 1 Polarization: 16.64 SS G_CDS: -4.92 Total: 11.71 kcal
Atomic # 6 Polarization: -26.39 SS G_CDS: -2.91 Total: -29.30 kcal
Atomic # 7 Polarization: -39.36 SS G_CDS: 0.18 Total: -39.18 kcal
Atomic # 14 Polarization: 20.89 SS G_CDS: -3.63 Total: 17.26 kcal
Total LS contribution 3.72 Total: 3.72 kcal
Total: -28.23 -7.57 -35.79 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261130388.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.216 kcal
(2) G-P(sol) polarization free energy of solvation -28.225 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.991 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.792 kcal
(6) G-S(sol) free energy of system = (1) + (5) 84.424 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds