Wall clock time and date at job start Mon Mar 30 2020 02:17:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86803 * 119.99692 * 2 1
4 4 H 1.48499 * 109.47247 * 276.54549 * 3 2 1
5 5 H 1.48495 * 109.47272 * 36.54729 * 3 2 1
6 6 H 1.48502 * 109.46653 * 156.54409 * 3 2 1
7 7 C 1.37875 * 120.00168 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99530 * 334.47092 * 7 2 1
9 9 C 1.50697 * 120.00341 * 154.47678 * 7 2 1
10 10 N 1.46902 * 110.43531 * 111.23209 * 9 7 2
11 11 C 1.46898 * 111.00250 * 307.17157 * 10 9 7
12 12 C 1.53000 * 117.50105 * 228.09378 * 11 10 9
13 13 C 1.52996 * 117.50348 * 159.46867 * 11 10 9
14 14 C 1.54896 * 110.59667 * 348.61888 * 9 7 2
15 15 C 1.56314 * 103.22276 * 203.74718 * 14 9 7
16 16 C 1.54262 * 103.52627 * 37.05057 * 15 14 9
17 17 H 1.08997 * 117.41257 * 196.42959 * 16 15 14
18 18 C 1.53007 * 118.19749 * 41.80012 * 16 15 14
19 19 C 1.53005 * 60.37757 * 265.44709 * 18 16 15
20 20 H 1.08993 * 119.29233 * 248.69028 * 19 18 16
21 21 H 0.97002 * 119.99970 * 0.02562 * 1 2 3
22 22 H 1.00899 * 110.99813 * 71.12740 * 10 9 7
23 23 H 1.09007 * 115.55163 * 13.79756 * 11 10 9
24 24 H 1.09001 * 117.49665 * 359.97438 * 12 11 10
25 25 H 1.08993 * 117.50149 * 145.02165 * 12 11 10
26 26 H 1.08994 * 117.50177 * 214.98396 * 13 11 10
27 27 H 1.09005 * 117.49288 * 0.02562 * 13 11 10
28 28 H 1.09004 * 110.75178 * 321.63224 * 14 9 7
29 29 H 1.08994 * 110.75993 * 84.82267 * 14 9 7
30 30 H 1.09004 * 110.78785 * 278.60337 * 15 14 9
31 31 H 1.08996 * 110.82141 * 155.51973 * 15 14 9
32 32 H 1.09001 * 117.45607 * 13.04815 * 18 16 15
33 33 H 1.08999 * 117.46193 * 157.87052 * 18 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.3583 2.1263 -1.3909
5 1 1.5225 2.6088 0.8337
6 1 3.6089 1.4043 0.5573
7 6 2.0045 -1.1940 -0.0005
8 1 1.5436 -2.0838 0.4022
9 6 3.4012 -1.2575 -0.5629
10 7 4.3764 -1.4896 0.5110
11 6 4.2160 -0.5053 1.5896
12 6 5.4768 0.1952 2.1000
13 6 4.7870 -0.8631 2.9632
14 6 3.7394 0.0449 -1.3301
15 6 4.8632 -0.4044 -2.3193
16 6 4.4302 -1.8252 -2.7360
17 1 5.1804 -2.4608 -3.2063
18 6 2.9490 -2.0728 -3.0290
19 6 3.5027 -2.3641 -1.6328
20 1 3.5697 -3.3967 -1.2904
21 1 -0.4850 0.8401 -0.0004
22 1 4.3051 -2.4310 0.8669
23 1 3.2933 0.0745 1.5637
24 1 6.4254 -0.0746 1.6358
25 1 5.3838 1.2360 2.4099
26 1 4.2402 -0.5186 3.8408
27 1 5.2821 -1.8287 3.0664
28 1 2.8719 0.4030 -1.8845
29 1 4.1031 0.8124 -0.6469
30 1 5.8311 -0.4321 -1.8186
31 1 4.9006 0.2532 -3.1878
32 1 2.3064 -1.1997 -3.1428
33 1 2.6968 -2.9267 -3.6577
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261130388.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:17:26
Heat of formation + Delta-G solvation = 64.990084 kcal
Electronic energy + Delta-G solvation = -14456.561641 eV
Core-core repulsion = 12291.115765 eV
Total energy + Delta-G solvation = -2165.445876 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 207.132 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.87236 -38.05289 -35.05860 -33.29471 -31.26386 -28.68687 -25.34827 -24.70177
-23.12920 -21.68827 -20.63237 -20.16825 -18.30375 -17.83097 -16.74779 -16.41207
-15.69468 -15.01721 -14.86751 -14.25567 -13.80044 -13.74921 -13.64130 -12.89677
-12.71252 -12.27121 -12.14190 -12.13125 -11.80364 -11.27695 -11.25237 -10.96208
-10.76019 -10.64382 -10.29459 -10.21285 -8.85051 -8.40993 -6.31139 1.26831
1.35064 1.41182 2.26645 2.81512 3.10250 3.14517 3.44425 3.90864
4.01140 4.24932 4.32585 4.33126 4.41475 4.46411 4.63378 4.74311
4.82885 4.85034 4.92562 4.93991 5.05698 5.16801 5.22880 5.30339
5.38769 5.41698 5.50480 5.59094 5.63797 6.23962 6.47064 6.75321
6.84569 7.32055 8.75491
Molecular weight = 207.13amu
Principal moments of inertia in cm(-1)
A = 0.023377 B = 0.019859 C = 0.014314
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1197.493492 B = 1409.568635 C = 1955.672910
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.031 3.969
3 Si 0.920 3.080
4 H -0.290 1.290
5 H -0.321 1.321
6 H -0.195 1.195
7 C -0.536 4.536
8 H 0.023 0.977
9 C 0.240 3.760
10 N -0.635 5.635
11 C 0.005 3.995
12 C -0.168 4.168
13 C -0.186 4.186
14 C -0.164 4.164
15 C -0.074 4.074
16 C -0.151 4.151
17 H 0.127 0.873
18 C -0.158 4.158
19 C -0.147 4.147
20 H 0.098 0.902
21 H 0.262 0.738
22 H 0.330 0.670
23 H 0.081 0.919
24 H 0.102 0.898
25 H 0.091 0.909
26 H 0.092 0.908
27 H 0.104 0.896
28 H 0.047 0.953
29 H 0.080 0.920
30 H 0.085 0.915
31 H 0.067 0.933
32 H 0.062 0.938
33 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.886 -0.483 -1.145 11.950
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.169 4.169
3 Si 0.751 3.249
4 H -0.217 1.217
5 H -0.252 1.252
6 H -0.119 1.119
7 C -0.575 4.575
8 H 0.042 0.958
9 C 0.150 3.850
10 N -0.264 5.264
11 C -0.106 4.106
12 C -0.207 4.207
13 C -0.223 4.223
14 C -0.201 4.201
15 C -0.111 4.111
16 C -0.169 4.169
17 H 0.145 0.855
18 C -0.196 4.196
19 C -0.167 4.167
20 H 0.116 0.884
21 H 0.072 0.928
22 H 0.148 0.852
23 H 0.099 0.901
24 H 0.121 0.879
25 H 0.109 0.891
26 H 0.110 0.890
27 H 0.122 0.878
28 H 0.065 0.935
29 H 0.097 0.903
30 H 0.103 0.897
31 H 0.086 0.914
32 H 0.080 0.920
33 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 12.255 -0.072 -1.462 12.342
hybrid contribution -1.653 0.387 0.543 1.782
sum 10.603 0.315 -0.919 10.647
Atomic orbital electron populations
1.70237 1.08679 1.27911 1.49827 1.25920 0.94799 1.02584 0.93618
0.87058 0.81491 0.79008 0.77357 1.21740 1.25199 1.11886 1.21502
1.00192 0.94680 1.41133 0.95840 1.18991 0.86940 0.90854 0.88178
1.60616 1.51513 1.05076 1.09183 1.22536 0.96410 1.00096 0.91566
1.23133 0.97330 0.96973 1.03231 1.23199 1.04389 1.00727 0.94031
1.23396 0.98381 0.99242 0.99123 1.21986 0.97886 0.94191 0.97078
1.23148 0.92320 0.98315 1.03141 0.85502 1.22777 0.96011 1.02530
0.98253 1.22931 1.05100 0.98511 0.90116 0.88372 0.92849 0.85249
0.90102 0.87948 0.89084 0.88959 0.87808 0.93495 0.90260 0.89676
0.91433 0.91963 0.87232
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.96 13.96 21.45 0.30 -57.66 16
2 C 0.03 1.77 5.02 84.65 0.43 2.19 16
3 Si 0.92 44.30 21.37 68.60 1.47 45.77 16
4 H -0.29 -13.85 6.58 99.48 0.65 -13.20 16
5 H -0.32 -15.99 7.11 99.48 0.71 -15.28 16
6 H -0.19 -8.31 3.49 99.48 0.35 -7.96 16
7 C -0.54 -29.76 7.90 25.60 0.20 -29.56 16
8 H 0.02 1.47 8.06 -2.91 -0.02 1.45 16
9 C 0.24 10.69 0.59 3.85 0.00 10.70 16
10 N -0.64 -25.02 6.39 -446.68 -2.85 -27.88 16
11 C 0.00 0.18 3.81 44.91 0.17 0.35 16
12 C -0.17 -5.28 10.23 30.59 0.31 -4.97 16
13 C -0.19 -5.79 10.37 30.59 0.32 -5.48 16
14 C -0.16 -7.02 2.96 32.39 0.10 -6.92 16
15 C -0.07 -2.53 6.87 32.17 0.22 -2.31 16
16 C -0.15 -5.01 7.02 -10.07 -0.07 -5.08 16
17 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16
18 C -0.16 -5.93 9.82 30.60 0.30 -5.63 16
19 C -0.15 -5.89 5.98 -10.07 -0.06 -5.95 16
20 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16
21 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16
22 H 0.33 12.55 8.69 -89.69 -0.78 11.77 16
23 H 0.08 3.71 3.42 -2.38 -0.01 3.70 16
24 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16
25 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16
26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16
27 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16
28 H 0.05 2.25 4.68 -2.39 -0.01 2.24 16
29 H 0.08 3.37 3.68 -2.39 -0.01 3.36 16
30 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16
31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16
32 H 0.06 2.68 7.21 -2.39 -0.02 2.67 16
33 H 0.11 3.49 8.14 -2.39 -0.02 3.48 16
Total: -1.00 -63.20 246.80 0.74 -62.45
By element:
Atomic # 1 Polarization: 30.06 SS G_CDS: -0.09 Total: 29.98 kcal
Atomic # 6 Polarization: -54.58 SS G_CDS: 1.92 Total: -52.66 kcal
Atomic # 7 Polarization: -82.98 SS G_CDS: -2.56 Total: -85.54 kcal
Atomic # 14 Polarization: 44.30 SS G_CDS: 1.47 Total: 45.77 kcal
Total: -63.20 0.74 -62.45 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261130388.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.443 kcal
(2) G-P(sol) polarization free energy of solvation -63.196 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.990 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds