Wall clock time and date at job start Mon Mar 30 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99692 * 2 1 4 4 H 1.48499 * 109.47247 * 276.54549 * 3 2 1 5 5 H 1.48495 * 109.47272 * 36.54729 * 3 2 1 6 6 H 1.48502 * 109.46653 * 156.54409 * 3 2 1 7 7 C 1.37875 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99530 * 334.47092 * 7 2 1 9 9 C 1.50697 * 120.00341 * 154.47678 * 7 2 1 10 10 N 1.46902 * 110.43531 * 111.23209 * 9 7 2 11 11 C 1.46898 * 111.00250 * 307.17157 * 10 9 7 12 12 C 1.53000 * 117.50105 * 228.09378 * 11 10 9 13 13 C 1.52996 * 117.50348 * 159.46867 * 11 10 9 14 14 C 1.54896 * 110.59667 * 348.61888 * 9 7 2 15 15 C 1.56314 * 103.22276 * 203.74718 * 14 9 7 16 16 C 1.54262 * 103.52627 * 37.05057 * 15 14 9 17 17 H 1.08997 * 117.41257 * 196.42959 * 16 15 14 18 18 C 1.53007 * 118.19749 * 41.80012 * 16 15 14 19 19 C 1.53005 * 60.37757 * 265.44709 * 18 16 15 20 20 H 1.08993 * 119.29233 * 248.69028 * 19 18 16 21 21 H 0.97002 * 119.99970 * 0.02562 * 1 2 3 22 22 H 1.00899 * 110.99813 * 71.12740 * 10 9 7 23 23 H 1.09007 * 115.55163 * 13.79756 * 11 10 9 24 24 H 1.09001 * 117.49665 * 359.97438 * 12 11 10 25 25 H 1.08993 * 117.50149 * 145.02165 * 12 11 10 26 26 H 1.08994 * 117.50177 * 214.98396 * 13 11 10 27 27 H 1.09005 * 117.49288 * 0.02562 * 13 11 10 28 28 H 1.09004 * 110.75178 * 321.63224 * 14 9 7 29 29 H 1.08994 * 110.75993 * 84.82267 * 14 9 7 30 30 H 1.09004 * 110.78785 * 278.60337 * 15 14 9 31 31 H 1.08996 * 110.82141 * 155.51973 * 15 14 9 32 32 H 1.09001 * 117.45607 * 13.04815 * 18 16 15 33 33 H 1.08999 * 117.46193 * 157.87052 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3583 2.1263 -1.3909 5 1 1.5225 2.6088 0.8337 6 1 3.6089 1.4043 0.5573 7 6 2.0045 -1.1940 -0.0005 8 1 1.5436 -2.0838 0.4022 9 6 3.4012 -1.2575 -0.5629 10 7 4.3764 -1.4896 0.5110 11 6 4.2160 -0.5053 1.5896 12 6 5.4768 0.1952 2.1000 13 6 4.7870 -0.8631 2.9632 14 6 3.7394 0.0449 -1.3301 15 6 4.8632 -0.4044 -2.3193 16 6 4.4302 -1.8252 -2.7360 17 1 5.1804 -2.4608 -3.2063 18 6 2.9490 -2.0728 -3.0290 19 6 3.5027 -2.3641 -1.6328 20 1 3.5697 -3.3967 -1.2904 21 1 -0.4850 0.8401 -0.0004 22 1 4.3051 -2.4310 0.8669 23 1 3.2933 0.0745 1.5637 24 1 6.4254 -0.0746 1.6358 25 1 5.3838 1.2360 2.4099 26 1 4.2402 -0.5186 3.8408 27 1 5.2821 -1.8287 3.0664 28 1 2.8719 0.4030 -1.8845 29 1 4.1031 0.8124 -0.6469 30 1 5.8311 -0.4321 -1.8186 31 1 4.9006 0.2532 -3.1878 32 1 2.3064 -1.1997 -3.1428 33 1 2.6968 -2.9267 -3.6577 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130388.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:26 Heat of formation + Delta-G solvation = 64.990084 kcal Electronic energy + Delta-G solvation = -14456.561641 eV Core-core repulsion = 12291.115765 eV Total energy + Delta-G solvation = -2165.445876 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.87236 -38.05289 -35.05860 -33.29471 -31.26386 -28.68687 -25.34827 -24.70177 -23.12920 -21.68827 -20.63237 -20.16825 -18.30375 -17.83097 -16.74779 -16.41207 -15.69468 -15.01721 -14.86751 -14.25567 -13.80044 -13.74921 -13.64130 -12.89677 -12.71252 -12.27121 -12.14190 -12.13125 -11.80364 -11.27695 -11.25237 -10.96208 -10.76019 -10.64382 -10.29459 -10.21285 -8.85051 -8.40993 -6.31139 1.26831 1.35064 1.41182 2.26645 2.81512 3.10250 3.14517 3.44425 3.90864 4.01140 4.24932 4.32585 4.33126 4.41475 4.46411 4.63378 4.74311 4.82885 4.85034 4.92562 4.93991 5.05698 5.16801 5.22880 5.30339 5.38769 5.41698 5.50480 5.59094 5.63797 6.23962 6.47064 6.75321 6.84569 7.32055 8.75491 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.023377 B = 0.019859 C = 0.014314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.493492 B = 1409.568635 C = 1955.672910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.031 3.969 3 Si 0.920 3.080 4 H -0.290 1.290 5 H -0.321 1.321 6 H -0.195 1.195 7 C -0.536 4.536 8 H 0.023 0.977 9 C 0.240 3.760 10 N -0.635 5.635 11 C 0.005 3.995 12 C -0.168 4.168 13 C -0.186 4.186 14 C -0.164 4.164 15 C -0.074 4.074 16 C -0.151 4.151 17 H 0.127 0.873 18 C -0.158 4.158 19 C -0.147 4.147 20 H 0.098 0.902 21 H 0.262 0.738 22 H 0.330 0.670 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.886 -0.483 -1.145 11.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.169 4.169 3 Si 0.751 3.249 4 H -0.217 1.217 5 H -0.252 1.252 6 H -0.119 1.119 7 C -0.575 4.575 8 H 0.042 0.958 9 C 0.150 3.850 10 N -0.264 5.264 11 C -0.106 4.106 12 C -0.207 4.207 13 C -0.223 4.223 14 C -0.201 4.201 15 C -0.111 4.111 16 C -0.169 4.169 17 H 0.145 0.855 18 C -0.196 4.196 19 C -0.167 4.167 20 H 0.116 0.884 21 H 0.072 0.928 22 H 0.148 0.852 23 H 0.099 0.901 24 H 0.121 0.879 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.122 0.878 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.255 -0.072 -1.462 12.342 hybrid contribution -1.653 0.387 0.543 1.782 sum 10.603 0.315 -0.919 10.647 Atomic orbital electron populations 1.70237 1.08679 1.27911 1.49827 1.25920 0.94799 1.02584 0.93618 0.87058 0.81491 0.79008 0.77357 1.21740 1.25199 1.11886 1.21502 1.00192 0.94680 1.41133 0.95840 1.18991 0.86940 0.90854 0.88178 1.60616 1.51513 1.05076 1.09183 1.22536 0.96410 1.00096 0.91566 1.23133 0.97330 0.96973 1.03231 1.23199 1.04389 1.00727 0.94031 1.23396 0.98381 0.99242 0.99123 1.21986 0.97886 0.94191 0.97078 1.23148 0.92320 0.98315 1.03141 0.85502 1.22777 0.96011 1.02530 0.98253 1.22931 1.05100 0.98511 0.90116 0.88372 0.92849 0.85249 0.90102 0.87948 0.89084 0.88959 0.87808 0.93495 0.90260 0.89676 0.91433 0.91963 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.96 13.96 21.45 0.30 -57.66 16 2 C 0.03 1.77 5.02 84.65 0.43 2.19 16 3 Si 0.92 44.30 21.37 68.60 1.47 45.77 16 4 H -0.29 -13.85 6.58 99.48 0.65 -13.20 16 5 H -0.32 -15.99 7.11 99.48 0.71 -15.28 16 6 H -0.19 -8.31 3.49 99.48 0.35 -7.96 16 7 C -0.54 -29.76 7.90 25.60 0.20 -29.56 16 8 H 0.02 1.47 8.06 -2.91 -0.02 1.45 16 9 C 0.24 10.69 0.59 3.85 0.00 10.70 16 10 N -0.64 -25.02 6.39 -446.68 -2.85 -27.88 16 11 C 0.00 0.18 3.81 44.91 0.17 0.35 16 12 C -0.17 -5.28 10.23 30.59 0.31 -4.97 16 13 C -0.19 -5.79 10.37 30.59 0.32 -5.48 16 14 C -0.16 -7.02 2.96 32.39 0.10 -6.92 16 15 C -0.07 -2.53 6.87 32.17 0.22 -2.31 16 16 C -0.15 -5.01 7.02 -10.07 -0.07 -5.08 16 17 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16 18 C -0.16 -5.93 9.82 30.60 0.30 -5.63 16 19 C -0.15 -5.89 5.98 -10.07 -0.06 -5.95 16 20 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 21 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 22 H 0.33 12.55 8.69 -89.69 -0.78 11.77 16 23 H 0.08 3.71 3.42 -2.38 -0.01 3.70 16 24 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 25 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 28 H 0.05 2.25 4.68 -2.39 -0.01 2.24 16 29 H 0.08 3.37 3.68 -2.39 -0.01 3.36 16 30 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.68 7.21 -2.39 -0.02 2.67 16 33 H 0.11 3.49 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -63.20 246.80 0.74 -62.45 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: -0.09 Total: 29.98 kcal Atomic # 6 Polarization: -54.58 SS G_CDS: 1.92 Total: -52.66 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -2.56 Total: -85.54 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.47 Total: 45.77 kcal Total: -63.20 0.74 -62.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130388.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.443 kcal (2) G-P(sol) polarization free energy of solvation -63.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds