Wall clock time and date at job start Mon Mar 30 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00316 * 2 1 4 4 H 1.48501 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46860 * 60.00073 * 3 2 1 6 6 H 1.48496 * 109.46831 * 300.00085 * 3 2 1 7 7 C 1.37882 * 119.99460 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99681 * 172.06953 * 7 2 1 9 9 C 1.50695 * 120.00387 * 352.07320 * 7 2 1 10 10 N 1.46901 * 110.43153 * 301.94427 * 9 7 2 11 11 C 1.46906 * 111.00039 * 295.28134 * 10 9 7 12 12 C 1.53003 * 117.49612 * 225.84053 * 11 10 9 13 13 C 1.53000 * 117.49801 * 157.18013 * 11 10 9 14 14 C 1.54889 * 110.48648 * 179.26046 * 9 7 2 15 15 C 1.54883 * 102.74912 * 279.25849 * 14 9 7 16 16 C 1.54265 * 104.19858 * 322.06014 * 15 14 9 17 17 H 1.08999 * 117.76097 * 163.96115 * 16 15 14 18 18 C 1.52999 * 118.19577 * 319.43016 * 16 15 14 19 19 C 1.53005 * 60.38028 * 93.61489 * 18 16 15 20 20 H 1.08996 * 119.75236 * 111.12159 * 19 18 16 21 21 H 0.96999 * 120.00493 * 184.44367 * 1 2 3 22 22 H 1.00899 * 111.00423 * 59.23651 * 10 9 7 23 23 H 1.08995 * 115.54808 * 11.50795 * 11 10 9 24 24 H 1.08997 * 117.50077 * 359.97438 * 12 11 10 25 25 H 1.09001 * 117.49462 * 145.01779 * 12 11 10 26 26 H 1.08997 * 117.49552 * 214.97672 * 13 11 10 27 27 H 1.08999 * 117.50026 * 359.97438 * 13 11 10 28 28 H 1.09001 * 110.75608 * 37.57935 * 14 9 7 29 29 H 1.09004 * 110.75418 * 160.94146 * 14 9 7 30 30 H 1.09003 * 110.48838 * 203.37563 * 15 14 9 31 31 H 1.09005 * 110.59605 * 80.79089 * 15 14 9 32 32 H 1.09001 * 117.46375 * 346.01584 * 18 16 15 33 33 H 1.09006 * 117.45832 * 201.21316 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 1.2126 6 1 1.8904 2.3964 -1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0767 -1.1987 -0.1285 9 6 1.2617 -2.4929 0.1811 10 7 0.5207 -2.4878 1.4495 11 6 1.4385 -2.4298 2.5951 12 6 1.1750 -3.3856 3.7605 13 6 0.8863 -1.8904 3.9161 14 6 2.2427 -3.6903 0.1278 15 6 2.4499 -3.8949 -1.3934 16 6 1.0588 -3.6274 -2.0042 17 1 1.0016 -3.4483 -3.0778 18 6 -0.1695 -4.1666 -1.2685 19 6 0.3033 -2.7359 -1.0030 20 1 -0.3032 -1.8948 -1.3386 21 1 -0.4851 -0.8375 0.0651 22 1 -0.1419 -1.7275 1.4782 23 1 2.4773 -2.2042 2.3543 24 1 0.3205 -4.0571 3.6773 25 1 2.0405 -3.7884 4.2865 26 1 1.5619 -1.3102 4.5445 27 1 -0.1579 -1.5781 3.9350 28 1 3.1847 -3.4400 0.6158 29 1 1.7959 -4.5761 0.5794 30 1 2.7677 -4.9167 -1.6012 31 1 3.1795 -3.1834 -1.7802 32 1 -0.0019 -4.9051 -0.4844 33 1 -1.0853 -4.2944 -1.8458 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:28 Heat of formation + Delta-G solvation = 53.034112 kcal Electronic energy + Delta-G solvation = -14313.311350 eV Core-core repulsion = 12147.347024 eV Total energy + Delta-G solvation = -2165.964326 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.12583 -36.46613 -33.45118 -30.89415 -29.53578 -25.82766 -23.89462 -22.53187 -21.67690 -20.15960 -18.66698 -18.31436 -17.16638 -15.45847 -14.85931 -14.00225 -13.95748 -13.77553 -12.74761 -12.64158 -11.96516 -11.67857 -11.40039 -10.91216 -10.88651 -10.68100 -10.49831 -10.25427 -10.17011 -10.14297 -9.53835 -9.42870 -9.35392 -9.03258 -8.55738 -8.31148 -7.02197 -6.33156 -4.18306 3.38892 3.40455 3.54521 4.44520 4.60891 4.68132 5.12952 5.25909 5.56221 5.71122 5.72221 5.76885 5.93571 5.99868 6.14704 6.22039 6.28909 6.39647 6.41913 6.52830 6.56377 6.70230 6.75590 6.77939 6.90734 7.02007 7.04146 7.27355 7.39485 7.99625 8.22652 8.54562 8.71939 8.77670 9.53119 10.92529 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.017844 C = 0.011909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.480223 B = 1568.755106 C = 2350.588507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.031 3.969 3 Si 1.066 2.934 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.604 4.604 8 H 0.050 0.950 9 C 0.248 3.752 10 N -0.660 5.660 11 C 0.061 3.939 12 C -0.190 4.190 13 C -0.203 4.203 14 C -0.106 4.106 15 C -0.079 4.079 16 C -0.176 4.176 17 H 0.092 0.908 18 C -0.168 4.168 19 C -0.125 4.125 20 H 0.107 0.893 21 H 0.278 0.722 22 H 0.343 0.657 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 -4.924 1.676 5.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.895 3.105 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.643 4.643 8 H 0.069 0.931 9 C 0.159 3.841 10 N -0.293 5.293 11 C -0.051 4.051 12 C -0.229 4.229 13 C -0.241 4.241 14 C -0.144 4.144 15 C -0.117 4.117 16 C -0.195 4.195 17 H 0.110 0.890 18 C -0.205 4.205 19 C -0.145 4.145 20 H 0.125 0.875 21 H 0.092 0.908 22 H 0.166 0.834 23 H 0.115 0.885 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.928 -3.952 1.624 4.688 hybrid contribution 0.448 -0.603 -0.079 0.755 sum 2.376 -4.555 1.545 5.365 Atomic orbital electron populations 1.70823 1.06795 1.31608 1.46057 1.25703 0.96450 1.02382 0.92932 0.83579 0.74639 0.75245 0.77006 1.21604 1.21339 1.21384 1.22348 0.95262 0.91902 1.54837 0.93119 1.19056 0.88196 0.92761 0.84056 1.60777 1.17061 1.49807 1.01613 1.22067 0.97268 0.99864 0.85891 1.23097 1.02522 0.92518 1.04726 1.23093 1.01568 0.96477 1.02984 1.22411 0.99020 0.98270 0.94679 1.21683 0.95107 0.98957 0.95923 1.22872 0.92171 1.07969 0.96490 0.89001 1.22782 0.96174 0.99160 1.02345 1.23382 1.00495 0.91663 0.98911 0.87542 0.90761 0.83428 0.88545 0.89406 0.90174 0.89900 0.89474 0.92877 0.92883 0.93689 0.91486 0.89715 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.58 12.49 55.43 0.69 -24.88 16 2 C 0.03 0.82 5.22 -17.82 -0.09 0.73 16 3 Si 1.07 24.56 29.91 -169.99 -5.08 19.48 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.60 -15.84 6.90 -34.44 -0.24 -16.08 16 8 H 0.05 1.37 7.77 -52.48 -0.41 0.96 16 9 C 0.25 5.84 0.30 -131.10 -0.04 5.80 16 10 N -0.66 -15.16 6.37 -92.54 -0.59 -15.75 16 11 C 0.06 1.28 5.07 -67.71 -0.34 0.93 16 12 C -0.19 -3.35 10.46 -26.69 -0.28 -3.63 16 13 C -0.20 -3.76 10.35 -26.69 -0.28 -4.04 16 14 C -0.11 -2.24 4.56 -24.74 -0.11 -2.36 16 15 C -0.08 -1.55 6.54 -25.08 -0.16 -1.72 16 16 C -0.18 -3.58 7.06 -89.50 -0.63 -4.22 16 17 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 18 C -0.17 -3.30 9.83 -26.73 -0.26 -3.56 16 19 C -0.13 -2.89 5.16 -89.50 -0.46 -3.35 16 20 H 0.11 2.73 6.28 -51.93 -0.33 2.40 16 21 H 0.28 7.64 3.97 -40.82 -0.16 7.48 16 22 H 0.34 8.54 6.08 -39.29 -0.24 8.30 16 23 H 0.10 2.16 6.86 -51.93 -0.36 1.80 16 24 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 25 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 28 H 0.05 1.13 7.64 -51.93 -0.40 0.73 16 29 H 0.05 1.10 7.38 -51.93 -0.38 0.71 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.66 7.21 -51.93 -0.37 1.28 16 33 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 259.88 15.07 3.92 3.92 Total: -1.00 -26.88 259.88 -8.79 -35.67 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -4.82 Total: 13.06 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: -2.90 Total: -31.49 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.10 Total: -40.64 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.88 -8.79 -35.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.706 kcal (2) G-P(sol) polarization free energy of solvation -26.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds