Wall clock time and date at job start Mon Mar 30 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00316 * 2 1 4 4 H 1.48501 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46860 * 60.00073 * 3 2 1 6 6 H 1.48496 * 109.46831 * 300.00085 * 3 2 1 7 7 C 1.37882 * 119.99460 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99681 * 172.06953 * 7 2 1 9 9 C 1.50695 * 120.00387 * 352.07320 * 7 2 1 10 10 N 1.46901 * 110.43153 * 301.94427 * 9 7 2 11 11 C 1.46906 * 111.00039 * 295.28134 * 10 9 7 12 12 C 1.53003 * 117.49612 * 225.84053 * 11 10 9 13 13 C 1.53000 * 117.49801 * 157.18013 * 11 10 9 14 14 C 1.54889 * 110.48648 * 179.26046 * 9 7 2 15 15 C 1.54883 * 102.74912 * 279.25849 * 14 9 7 16 16 C 1.54265 * 104.19858 * 322.06014 * 15 14 9 17 17 H 1.08999 * 117.76097 * 163.96115 * 16 15 14 18 18 C 1.52999 * 118.19577 * 319.43016 * 16 15 14 19 19 C 1.53005 * 60.38028 * 93.61489 * 18 16 15 20 20 H 1.08996 * 119.75236 * 111.12159 * 19 18 16 21 21 H 0.96999 * 120.00493 * 184.44367 * 1 2 3 22 22 H 1.00899 * 111.00423 * 59.23651 * 10 9 7 23 23 H 1.08995 * 115.54808 * 11.50795 * 11 10 9 24 24 H 1.08997 * 117.50077 * 359.97438 * 12 11 10 25 25 H 1.09001 * 117.49462 * 145.01779 * 12 11 10 26 26 H 1.08997 * 117.49552 * 214.97672 * 13 11 10 27 27 H 1.08999 * 117.50026 * 359.97438 * 13 11 10 28 28 H 1.09001 * 110.75608 * 37.57935 * 14 9 7 29 29 H 1.09004 * 110.75418 * 160.94146 * 14 9 7 30 30 H 1.09003 * 110.48838 * 203.37563 * 15 14 9 31 31 H 1.09005 * 110.59605 * 80.79089 * 15 14 9 32 32 H 1.09001 * 117.46375 * 346.01584 * 18 16 15 33 33 H 1.09006 * 117.45832 * 201.21316 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 1.2126 6 1 1.8904 2.3964 -1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0767 -1.1987 -0.1285 9 6 1.2617 -2.4929 0.1811 10 7 0.5207 -2.4878 1.4495 11 6 1.4385 -2.4298 2.5951 12 6 1.1750 -3.3856 3.7605 13 6 0.8863 -1.8904 3.9161 14 6 2.2427 -3.6903 0.1278 15 6 2.4499 -3.8949 -1.3934 16 6 1.0588 -3.6274 -2.0042 17 1 1.0016 -3.4483 -3.0778 18 6 -0.1695 -4.1666 -1.2685 19 6 0.3033 -2.7359 -1.0030 20 1 -0.3032 -1.8948 -1.3386 21 1 -0.4851 -0.8375 0.0651 22 1 -0.1419 -1.7275 1.4782 23 1 2.4773 -2.2042 2.3543 24 1 0.3205 -4.0571 3.6773 25 1 2.0405 -3.7884 4.2865 26 1 1.5619 -1.3102 4.5445 27 1 -0.1579 -1.5781 3.9350 28 1 3.1847 -3.4400 0.6158 29 1 1.7959 -4.5761 0.5794 30 1 2.7677 -4.9167 -1.6012 31 1 3.1795 -3.1834 -1.7802 32 1 -0.0019 -4.9051 -0.4844 33 1 -1.0853 -4.2944 -1.8458 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:28 Heat of formation + Delta-G solvation = 38.322612 kcal Electronic energy + Delta-G solvation = -14313.949288 eV Core-core repulsion = 12147.347024 eV Total energy + Delta-G solvation = -2166.602264 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83288 -38.04250 -35.31412 -32.69295 -31.21294 -27.67412 -25.74956 -24.21601 -23.13431 -21.77824 -20.31023 -20.16885 -19.02691 -17.09079 -16.55028 -15.76711 -15.60308 -15.56086 -14.47382 -14.28720 -13.67329 -13.47440 -13.12125 -12.72957 -12.34618 -12.31985 -12.21983 -12.00821 -11.91958 -11.79216 -11.22834 -11.09461 -11.01424 -10.85748 -10.27531 -10.19274 -8.85972 -8.36956 -6.26961 1.49815 1.55614 1.71792 2.54252 2.95076 3.11344 3.23129 3.59492 3.87307 4.04501 4.17855 4.26657 4.30720 4.39839 4.47760 4.64988 4.79535 4.85459 4.87023 4.89988 4.95644 5.09511 5.15679 5.21842 5.35121 5.38848 5.43093 5.50622 5.62465 6.03057 6.22825 6.66072 6.77482 6.83665 7.50411 8.84728 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.017844 C = 0.011909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.480223 B = 1568.755106 C = 2350.588507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.011 4.011 3 Si 1.103 2.897 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.607 4.607 8 H 0.034 0.966 9 C 0.241 3.759 10 N -0.657 5.657 11 C 0.025 3.975 12 C -0.159 4.159 13 C -0.198 4.198 14 C -0.099 4.099 15 C -0.076 4.076 16 C -0.168 4.168 17 H 0.104 0.896 18 C -0.141 4.141 19 C -0.161 4.161 20 H 0.073 0.927 21 H 0.273 0.727 22 H 0.326 0.674 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 -6.207 2.031 7.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.212 4.212 3 Si 0.928 3.072 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.647 4.647 8 H 0.052 0.948 9 C 0.152 3.848 10 N -0.287 5.287 11 C -0.086 4.086 12 C -0.197 4.197 13 C -0.236 4.236 14 C -0.137 4.137 15 C -0.113 4.113 16 C -0.187 4.187 17 H 0.122 0.878 18 C -0.178 4.178 19 C -0.181 4.181 20 H 0.091 0.909 21 H 0.087 0.913 22 H 0.146 0.854 23 H 0.095 0.905 24 H 0.109 0.891 25 H 0.124 0.876 26 H 0.117 0.883 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.444 -5.259 1.986 6.129 hybrid contribution 0.300 -0.225 -0.176 0.414 sum 2.744 -5.484 1.810 6.393 Atomic orbital electron populations 1.70875 1.07451 1.31553 1.47837 1.26697 0.96602 1.05139 0.92741 0.83087 0.74321 0.72710 0.77071 1.20485 1.20940 1.21155 1.22565 0.94544 0.93610 1.53972 0.94756 1.19075 0.88734 0.92446 0.84561 1.60884 1.17031 1.48714 1.02095 1.22102 0.96117 1.03867 0.86503 1.23122 1.03317 0.91855 1.01408 1.23152 1.01468 0.97789 1.01233 1.22323 0.98000 0.97422 0.95910 1.21678 0.94559 1.00585 0.94525 1.23048 0.92617 1.06217 0.96788 0.87824 1.22815 0.96684 0.96388 1.01930 1.23192 1.02199 0.92586 1.00094 0.90905 0.91282 0.85354 0.90511 0.89054 0.87581 0.88300 0.90013 0.93590 0.92120 0.90453 0.92506 0.89161 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.70 12.49 21.45 0.27 -53.44 16 2 C -0.01 -0.61 5.22 84.66 0.44 -0.17 16 3 Si 1.10 50.04 29.91 68.60 2.05 52.09 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.61 -32.37 6.90 25.60 0.18 -32.20 16 8 H 0.03 1.88 7.77 -2.91 -0.02 1.86 16 9 C 0.24 11.38 0.30 3.85 0.00 11.38 16 10 N -0.66 -30.27 6.37 -446.68 -2.85 -33.12 16 11 C 0.03 1.05 5.07 44.92 0.23 1.28 16 12 C -0.16 -5.22 10.46 30.62 0.32 -4.90 16 13 C -0.20 -7.09 10.35 30.62 0.32 -6.77 16 14 C -0.10 -4.07 4.56 31.88 0.15 -3.92 16 15 C -0.08 -2.83 6.54 31.67 0.21 -2.63 16 16 C -0.17 -6.53 7.06 -10.07 -0.07 -6.60 16 17 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 18 C -0.14 -5.26 9.83 30.60 0.30 -4.96 16 19 C -0.16 -7.42 5.16 -10.07 -0.05 -7.47 16 20 H 0.07 3.84 6.28 -2.39 -0.01 3.83 16 21 H 0.27 15.53 3.97 -92.71 -0.37 15.16 16 22 H 0.33 16.61 6.08 -89.69 -0.55 16.07 16 23 H 0.08 3.46 6.86 -2.39 -0.02 3.45 16 24 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 25 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 26 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.05 1.92 7.64 -2.39 -0.02 1.91 16 29 H 0.06 2.39 7.38 -2.38 -0.02 2.37 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.09 3.28 7.21 -2.39 -0.02 3.26 16 33 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 Total: -1.00 -57.59 259.88 2.43 -55.15 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: 0.94 Total: 36.27 kcal Atomic # 6 Polarization: -58.98 SS G_CDS: 2.02 Total: -56.96 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -2.58 Total: -86.55 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Total: -57.59 2.43 -55.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.475 kcal (2) G-P(sol) polarization free energy of solvation -57.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds