Wall clock time and date at job start Mon Mar 30 2020 02:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47357 * 2 1 4 4 N 1.46505 * 109.47068 * 119.99909 * 2 1 3 5 5 C 1.36349 * 125.63298 * 300.26173 * 4 2 1 6 6 C 1.34847 * 108.21761 * 180.14942 * 5 4 2 7 7 C 1.40896 * 107.41771 * 359.63274 * 6 5 4 8 8 C 1.34849 * 107.41486 * 0.22942 * 7 6 5 9 9 C 1.50698 * 125.88991 * 180.02562 * 8 7 6 10 10 C 1.53007 * 109.47215 * 84.97679 * 9 8 7 11 11 C 1.50698 * 109.47215 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99813 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99818 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00509 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99742 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47249 * 59.99798 * 15 13 11 17 17 H 1.48507 * 109.46911 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47334 * 299.99624 * 15 13 11 19 19 H 1.09001 * 109.46803 * 60.00212 * 1 2 3 20 20 H 1.08999 * 109.47209 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46960 * 300.00097 * 1 2 3 22 22 H 1.08997 * 109.47331 * 239.99238 * 2 1 3 23 23 H 1.08993 * 109.47264 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.46535 * 299.99950 * 3 2 1 25 25 H 1.08991 * 109.46849 * 59.99487 * 3 2 1 26 26 H 1.07999 * 125.89168 * 0.03422 * 5 4 2 27 27 H 1.08002 * 126.29438 * 179.90446 * 6 5 4 28 28 H 1.07996 * 126.29290 * 180.21083 * 7 6 5 29 29 H 1.09001 * 109.47279 * 204.97421 * 9 8 7 30 30 H 1.09005 * 109.47307 * 324.97807 * 9 8 7 31 31 H 1.09001 * 109.46787 * 300.00044 * 10 9 8 32 32 H 1.09000 * 109.46453 * 60.00004 * 10 9 8 33 33 H 0.96993 * 120.00474 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7566 -0.3292 2.4846 6 6 2.3799 -1.2018 3.3022 7 6 3.0441 -2.1412 2.4888 8 6 2.8055 -1.8038 1.2052 9 6 3.3196 -2.5320 -0.0099 10 6 2.3787 -3.6907 -0.3461 11 6 2.8926 -4.4185 -1.5616 12 1 3.7993 -4.0874 -2.0461 13 6 2.2046 -5.5064 -2.0557 14 7 1.1002 -5.9093 -1.4661 15 14 2.8419 -6.4090 -3.5619 16 1 4.2003 -6.9401 -3.2828 17 1 1.9286 -7.5336 -3.8883 18 1 2.9037 -5.4712 -4.7117 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.1554 0.5120 2.7965 27 1 2.3682 -1.1863 4.3820 28 1 3.6358 -2.9775 2.8305 29 1 3.3645 -1.8438 -0.8540 30 1 4.3169 -2.9214 0.1949 31 1 2.3339 -4.3789 0.4980 32 1 1.3815 -3.3012 -0.5509 33 1 0.6164 -6.6748 -1.8135 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261140328.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:13 Heat of formation + Delta-G solvation = 7.354501 kcal Electronic energy + Delta-G solvation = -13460.160644 eV Core-core repulsion = 11292.215502 eV Total energy + Delta-G solvation = -2167.945143 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.15169 -36.27049 -35.87206 -33.53983 -30.51163 -29.43094 -28.19332 -26.44857 -23.36380 -23.09826 -21.15697 -19.42778 -18.57413 -17.57649 -16.55562 -15.79442 -15.66014 -15.01025 -14.73606 -14.55345 -14.08994 -13.66198 -13.45364 -13.11632 -13.03229 -12.86395 -12.80345 -12.66310 -12.45507 -12.23834 -11.98869 -11.74139 -11.62127 -11.25114 -10.57530 -9.40679 -8.75564 -8.20058 -6.33883 1.39037 1.42999 1.46435 1.51452 2.15224 2.21496 2.40686 3.11719 3.69827 4.01710 4.03833 4.16072 4.31605 4.46977 4.61081 4.65274 4.72158 4.80146 4.80817 4.90563 4.97681 5.08866 5.12494 5.24094 5.45008 5.46014 5.52474 5.66948 5.80721 6.18468 6.25945 6.46267 6.68989 6.83369 7.35813 8.90817 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.038049 B = 0.007965 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.718742 B = 3514.402644 C = 3821.474966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.112 3.888 3 C -0.148 4.148 4 N -0.439 5.439 5 C -0.017 4.017 6 C -0.218 4.218 7 C -0.232 4.232 8 C 0.012 3.988 9 C -0.034 4.034 10 C 0.045 3.955 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.264 1.264 19 H 0.095 0.905 20 H 0.032 0.968 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.189 0.811 27 H 0.150 0.850 28 H 0.123 0.877 29 H 0.060 0.940 30 H 0.071 0.929 31 H -0.014 1.014 32 H -0.016 1.016 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 14.270 3.316 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.011 3.989 3 C -0.205 4.205 4 N -0.115 5.115 5 C -0.146 4.146 6 C -0.243 4.243 7 C -0.256 4.256 8 C -0.100 4.100 9 C -0.072 4.072 10 C 0.007 3.993 11 C -0.584 4.584 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.791 3.209 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.189 1.189 19 H 0.114 0.886 20 H 0.051 0.949 21 H 0.096 0.904 22 H 0.099 0.901 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.206 0.794 27 H 0.167 0.833 28 H 0.141 0.859 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.004 0.996 32 H 0.002 0.998 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.081 14.342 2.993 14.651 hybrid contribution 0.082 -1.088 -0.523 1.210 sum 0.163 13.253 2.470 13.483 Atomic orbital electron populations 1.22108 0.92764 1.01813 1.04475 1.21635 0.96102 0.94916 0.86261 1.22083 1.01366 0.92585 1.04477 1.44410 1.38528 1.21823 1.06787 1.22064 1.06632 1.03810 0.82130 1.21053 1.05212 0.98484 0.99517 1.20831 1.08983 1.03419 0.92407 1.20700 1.00737 0.91733 0.96865 1.20058 0.98981 0.95867 0.92283 1.18830 0.93414 0.92248 0.94789 1.21654 1.10000 1.13760 1.12961 0.91739 1.26019 0.95003 0.98091 1.00652 1.70115 1.17953 1.26867 1.42382 0.85468 0.78373 0.77981 0.79036 1.19096 1.20840 1.18872 0.88586 0.94860 0.90362 0.90116 0.92797 0.88642 0.90608 0.79416 0.83251 0.85924 0.92136 0.91092 0.99606 0.99811 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.23 71.98 0.66 -3.17 16 2 C 0.11 3.15 3.50 44.99 0.16 3.31 16 3 C -0.15 -2.92 9.24 71.98 0.67 -2.26 16 4 N -0.44 -14.92 2.62 -487.62 -1.28 -16.20 16 5 C -0.02 -0.51 10.35 83.21 0.86 0.35 16 6 C -0.22 -7.21 10.86 22.14 0.24 -6.97 16 7 C -0.23 -9.19 10.77 22.14 0.24 -8.95 16 8 C 0.01 0.49 6.14 41.08 0.25 0.74 16 9 C -0.03 -1.51 5.31 29.85 0.16 -1.35 16 10 C 0.04 2.48 4.96 29.85 0.15 2.63 16 11 C -0.55 -31.73 9.11 25.60 0.23 -31.49 16 12 H 0.06 3.54 7.74 -2.91 -0.02 3.51 16 13 C 0.00 0.01 5.46 84.65 0.46 0.48 16 14 N -0.93 -58.18 13.29 21.45 0.28 -57.90 16 15 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 20 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.08 1.63 7.91 -2.39 -0.02 1.61 16 22 H 0.08 2.60 6.52 -2.39 -0.02 2.59 16 23 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 24 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.28 7.92 -2.39 -0.02 1.26 16 26 H 0.19 4.02 8.06 -2.91 -0.02 3.99 16 27 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 28 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 29 H 0.06 2.54 6.85 -2.39 -0.02 2.52 16 30 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 31 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -68.72 278.12 6.17 -62.56 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.05 Total: 11.60 kcal Atomic # 6 Polarization: -50.77 SS G_CDS: 4.08 Total: -46.69 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -0.99 Total: -74.09 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -68.72 6.17 -62.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140328.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.910 kcal (2) G-P(sol) polarization free energy of solvation -68.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds