Wall clock time and date at job start Mon Mar 30 2020 02:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31857 * 1 3 3 N 1.39532 * 120.00051 * 2 1 4 4 N 1.40099 * 126.09830 * 359.96543 * 3 2 1 5 5 C 1.30862 * 108.25070 * 180.02562 * 4 3 2 6 6 C 1.39923 * 108.36497 * 359.75078 * 5 4 3 7 7 C 1.35325 * 107.96917 * 0.41954 * 6 5 4 8 8 C 1.50695 * 126.19101 * 179.84907 * 7 6 5 9 9 H 1.09004 * 109.47157 * 204.68533 * 8 7 6 10 10 C 1.50707 * 109.47155 * 84.69258 * 8 7 6 11 11 H 1.08007 * 119.99926 * 295.36329 * 10 8 7 12 12 C 1.37874 * 120.00160 * 115.36591 * 10 8 7 13 13 N 1.31519 * 120.00243 * 5.62314 * 12 10 8 14 14 Si 1.86797 * 120.00104 * 185.62015 * 12 10 8 15 15 H 1.48504 * 109.47281 * 89.99935 * 14 12 10 16 16 H 1.48497 * 109.47402 * 209.99907 * 14 12 10 17 17 H 1.48504 * 109.47066 * 330.00264 * 14 12 10 18 18 C 1.52998 * 109.47498 * 324.69216 * 8 7 6 19 19 N 1.46894 * 109.47572 * 185.46451 * 18 8 7 20 20 H 1.08000 * 120.00175 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.99782 * 180.02562 * 1 2 3 22 22 H 1.08001 * 119.99964 * 179.97438 * 2 1 3 23 23 H 1.07999 * 125.81849 * 180.02562 * 5 4 3 24 24 H 1.08003 * 126.01442 * 180.29184 * 6 5 4 25 25 H 0.96996 * 120.00370 * 180.02562 * 13 12 10 26 26 H 1.09006 * 109.46967 * 305.46316 * 18 8 7 27 27 H 1.09005 * 109.47167 * 65.46120 * 18 8 7 28 28 H 1.00902 * 111.00377 * 174.09011 * 19 18 8 29 29 H 1.00894 * 111.00064 * 298.04932 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3186 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 7 1.4486 2.4892 -0.0007 5 6 2.4188 3.3674 -0.0010 6 6 3.6368 2.6788 0.0053 7 6 3.3667 1.3528 -0.0001 8 6 4.3808 0.2381 0.0005 9 1 3.9364 -0.6577 -0.4334 10 6 4.8104 -0.0495 1.4161 11 1 5.3415 0.7013 1.9824 12 6 4.5255 -1.2711 1.9883 13 7 3.9783 -2.2242 1.2657 14 14 4.9166 -1.5728 3.7897 15 1 3.7472 -1.1900 4.6211 16 1 5.2209 -3.0115 3.9961 17 1 6.0928 -0.7565 4.1843 18 6 5.5982 0.6556 -0.8270 19 7 6.5281 -0.4763 -0.9356 20 1 -0.5400 0.9353 -0.0004 21 1 -0.5400 -0.9354 0.0004 22 1 1.8586 -0.9353 0.0004 23 1 2.2996 4.4408 -0.0011 24 1 4.6195 3.1267 0.0110 25 1 3.7775 -3.0835 1.6683 26 1 5.2743 0.9567 -1.8233 27 1 6.0993 1.4920 -0.3396 28 1 7.2930 -0.2576 -1.5562 29 1 6.8676 -0.7539 -0.0270 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261147652.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:35 Heat of formation + Delta-G solvation = 91.122197 kcal Electronic energy + Delta-G solvation = -13522.696056 eV Core-core repulsion = 11254.843010 eV Total energy + Delta-G solvation = -2267.853046 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.50995 -35.27902 -34.00824 -32.28894 -30.59743 -28.72153 -27.01696 -24.37829 -22.24000 -21.48318 -19.28379 -18.27170 -16.60956 -16.23007 -14.85046 -14.53300 -14.18517 -13.92074 -13.78343 -13.10251 -12.68629 -12.12468 -11.79529 -11.61397 -11.24187 -10.99298 -10.89890 -10.62340 -10.23526 -9.87464 -9.56132 -9.39079 -8.68975 -7.97124 -7.66626 -7.46320 -6.21964 -4.26712 2.08815 3.20132 3.28742 3.30451 3.36896 3.50942 3.71825 4.30057 5.08077 5.34069 5.54627 5.83835 5.96215 6.12517 6.26198 6.33862 6.46364 6.63255 6.72986 6.86255 6.99190 7.09788 7.47076 7.56693 7.70319 8.02926 8.15607 8.18361 8.45204 8.54403 8.84952 9.37512 10.84806 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.025102 B = 0.013658 C = 0.011184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.164848 B = 2049.622931 C = 2502.944634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.109 3.891 3 N -0.330 5.330 4 N -0.329 5.329 5 C 0.049 3.951 6 C -0.307 4.307 7 C 0.151 3.849 8 C 0.077 3.923 9 H 0.091 0.909 10 C -0.510 4.510 11 H 0.056 0.944 12 C 0.075 3.925 13 N -0.876 5.876 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.088 3.912 19 N -0.838 5.838 20 H 0.104 0.896 21 H 0.113 0.887 22 H 0.170 0.830 23 H 0.173 0.827 24 H 0.137 0.863 25 H 0.265 0.735 26 H 0.041 0.959 27 H 0.012 0.988 28 H 0.318 0.682 29 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 4.026 -2.328 4.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.002 4.002 3 N -0.106 5.106 4 N -0.148 5.148 5 C -0.137 4.137 6 C -0.335 4.335 7 C 0.027 3.973 8 C 0.057 3.943 9 H 0.109 0.891 10 C -0.548 4.548 11 H 0.075 0.925 12 C -0.129 4.129 13 N -0.512 5.512 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.044 4.044 19 N -0.367 5.367 20 H 0.122 0.878 21 H 0.132 0.868 22 H 0.187 0.813 23 H 0.190 0.810 24 H 0.155 0.845 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.128 0.872 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.880 3.181 -2.614 4.526 hybrid contribution 1.670 0.710 1.600 2.419 sum -0.211 3.891 -1.014 4.026 Atomic orbital electron populations 1.23713 0.94557 1.02522 1.07953 1.21627 0.93663 0.86465 0.98403 1.46054 1.04528 1.04110 1.55936 1.77175 1.22805 0.87641 1.27207 1.23730 0.91332 0.99031 0.99632 1.21106 0.98587 0.92372 1.21431 1.22719 0.84410 0.97981 0.92220 1.17881 0.88311 0.91286 0.96852 0.89106 1.20849 1.37356 0.99553 0.97064 0.92541 1.24957 0.94285 0.95867 0.97801 1.69851 1.41885 1.04031 1.35483 0.86576 0.78854 0.77443 0.85069 1.20649 1.20994 1.19768 1.21644 0.94841 0.90690 0.97220 1.58507 1.20751 1.39638 1.17765 0.87796 0.86839 0.81334 0.80987 0.84482 0.92458 0.94006 0.97017 0.87227 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.54 14.35 28.83 0.41 -4.12 15 2 C 0.11 2.33 10.47 -15.94 -0.17 2.16 15 3 N -0.33 -7.52 3.80 -9.01 -0.03 -7.55 15 4 N -0.33 -7.13 11.73 30.64 0.36 -6.77 15 5 C 0.05 0.94 12.02 -17.33 -0.21 0.73 15 6 C -0.31 -6.29 10.00 -39.99 -0.40 -6.69 15 7 C 0.15 3.46 5.83 -81.87 -0.48 2.98 15 8 C 0.08 1.82 2.47 -92.92 -0.23 1.59 15 9 H 0.09 2.37 5.97 -51.93 -0.31 2.06 15 10 C -0.51 -12.91 7.45 -34.44 -0.26 -13.17 15 11 H 0.06 1.46 7.82 -52.48 -0.41 1.05 15 12 C 0.08 1.93 5.45 -17.82 -0.10 1.83 15 13 N -0.88 -22.89 12.62 55.43 0.70 -22.19 15 14 Si 0.89 20.31 29.54 -169.99 -5.02 15.28 15 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 18 C 0.09 1.80 5.69 -3.83 -0.02 1.78 15 19 N -0.84 -16.33 9.57 -10.37 -0.10 -16.43 15 20 H 0.10 1.94 7.54 -52.49 -0.40 1.54 15 21 H 0.11 1.75 8.06 -52.48 -0.42 1.33 15 22 H 0.17 3.76 7.21 -52.49 -0.38 3.38 15 23 H 0.17 2.51 8.06 -52.49 -0.42 2.09 15 24 H 0.14 2.54 7.54 -52.48 -0.40 2.14 15 25 H 0.27 6.68 8.31 -40.82 -0.34 6.34 15 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 27 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 15 28 H 0.32 5.09 9.08 -39.29 -0.36 4.73 15 29 H 0.35 7.15 8.25 -39.29 -0.32 6.82 15 LS Contribution 255.85 15.07 3.86 3.86 Total: -1.00 -27.80 255.85 -5.05 -32.85 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -3.37 Total: 13.85 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.44 Total: -12.90 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.93 Total: -52.94 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.80 -5.05 -32.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147652.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.972 kcal (2) G-P(sol) polarization free energy of solvation -27.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds