Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31857 * 1 3 3 N 1.39532 * 120.00051 * 2 1 4 4 N 1.40099 * 126.09830 * 359.96543 * 3 2 1 5 5 C 1.30862 * 108.25070 * 180.02562 * 4 3 2 6 6 C 1.39923 * 108.36497 * 359.75078 * 5 4 3 7 7 C 1.35325 * 107.96917 * 0.41954 * 6 5 4 8 8 C 1.50695 * 126.19101 * 179.84907 * 7 6 5 9 9 H 1.09004 * 109.47157 * 204.68533 * 8 7 6 10 10 C 1.50707 * 109.47155 * 84.69258 * 8 7 6 11 11 H 1.08007 * 119.99926 * 295.36329 * 10 8 7 12 12 C 1.37874 * 120.00160 * 115.36591 * 10 8 7 13 13 N 1.31519 * 120.00243 * 5.62314 * 12 10 8 14 14 Si 1.86797 * 120.00104 * 185.62015 * 12 10 8 15 15 H 1.48504 * 109.47281 * 89.99935 * 14 12 10 16 16 H 1.48497 * 109.47402 * 209.99907 * 14 12 10 17 17 H 1.48504 * 109.47066 * 330.00264 * 14 12 10 18 18 C 1.52998 * 109.47498 * 324.69216 * 8 7 6 19 19 N 1.46894 * 109.47572 * 185.46451 * 18 8 7 20 20 H 1.08000 * 120.00175 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.99782 * 180.02562 * 1 2 3 22 22 H 1.08001 * 119.99964 * 179.97438 * 2 1 3 23 23 H 1.07999 * 125.81849 * 180.02562 * 5 4 3 24 24 H 1.08003 * 126.01442 * 180.29184 * 6 5 4 25 25 H 0.96996 * 120.00370 * 180.02562 * 13 12 10 26 26 H 1.09006 * 109.46967 * 305.46316 * 18 8 7 27 27 H 1.09005 * 109.47167 * 65.46120 * 18 8 7 28 28 H 1.00902 * 111.00377 * 174.09011 * 19 18 8 29 29 H 1.00894 * 111.00064 * 298.04932 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3186 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 7 1.4486 2.4892 -0.0007 5 6 2.4188 3.3674 -0.0010 6 6 3.6368 2.6788 0.0053 7 6 3.3667 1.3528 -0.0001 8 6 4.3808 0.2381 0.0005 9 1 3.9364 -0.6577 -0.4334 10 6 4.8104 -0.0495 1.4161 11 1 5.3415 0.7013 1.9824 12 6 4.5255 -1.2711 1.9883 13 7 3.9783 -2.2242 1.2657 14 14 4.9166 -1.5728 3.7897 15 1 3.7472 -1.1900 4.6211 16 1 5.2209 -3.0115 3.9961 17 1 6.0928 -0.7565 4.1843 18 6 5.5982 0.6556 -0.8270 19 7 6.5281 -0.4763 -0.9356 20 1 -0.5400 0.9353 -0.0004 21 1 -0.5400 -0.9354 0.0004 22 1 1.8586 -0.9353 0.0004 23 1 2.2996 4.4408 -0.0011 24 1 4.6195 3.1267 0.0110 25 1 3.7775 -3.0835 1.6683 26 1 5.2743 0.9567 -1.8233 27 1 6.0993 1.4920 -0.3396 28 1 7.2930 -0.2576 -1.5562 29 1 6.8676 -0.7539 -0.0270 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261147652.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = 72.628362 kcal Electronic energy + Delta-G solvation = -13523.498009 eV Core-core repulsion = 11254.843010 eV Total energy + Delta-G solvation = -2268.654999 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.11610 -37.00675 -35.57568 -34.13086 -32.26119 -30.30436 -28.76184 -26.20940 -23.78462 -23.15887 -20.92675 -19.90787 -18.47601 -17.93411 -16.54984 -16.28383 -15.84637 -15.45560 -15.38203 -14.69082 -14.40859 -13.71725 -13.52150 -13.26737 -12.92547 -12.76652 -12.65678 -12.38457 -11.81784 -11.50920 -11.36103 -11.25644 -10.62838 -9.64678 -9.23679 -9.04163 -8.14316 -6.23865 0.50360 1.38842 1.43528 1.50216 1.78243 1.95515 2.09470 2.42779 3.16193 3.84363 3.96137 4.30930 4.37054 4.52731 4.69144 4.85333 4.87522 5.03027 5.10948 5.28209 5.33861 5.51523 5.63969 5.79779 5.98594 6.19559 6.50330 6.57007 6.85084 6.97910 7.00229 7.41716 8.91373 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.025102 B = 0.013658 C = 0.011184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.164848 B = 2049.622931 C = 2502.944634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 N -0.343 5.343 4 N -0.348 5.348 5 C 0.058 3.942 6 C -0.304 4.304 7 C 0.119 3.881 8 C 0.083 3.917 9 H 0.058 0.942 10 C -0.516 4.516 11 H 0.047 0.953 12 C 0.037 3.963 13 N -0.898 5.898 14 Si 0.944 3.056 15 H -0.289 1.289 16 H -0.281 1.281 17 H -0.267 1.267 18 C 0.095 3.905 19 N -0.845 5.845 20 H 0.104 0.896 21 H 0.144 0.856 22 H 0.151 0.849 23 H 0.220 0.780 24 H 0.156 0.844 25 H 0.264 0.736 26 H 0.049 0.951 27 H 0.020 0.980 28 H 0.339 0.661 29 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 5.198 -2.195 5.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.040 4.040 3 N -0.120 5.120 4 N -0.168 5.168 5 C -0.128 4.128 6 C -0.332 4.332 7 C -0.006 4.006 8 C 0.062 3.938 9 H 0.076 0.924 10 C -0.554 4.554 11 H 0.066 0.934 12 C -0.165 4.165 13 N -0.535 5.535 14 Si 0.771 3.229 15 H -0.216 1.216 16 H -0.206 1.206 17 H -0.192 1.192 18 C -0.036 4.036 19 N -0.375 5.375 20 H 0.123 0.877 21 H 0.162 0.838 22 H 0.168 0.832 23 H 0.236 0.764 24 H 0.174 0.826 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.151 0.849 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.931 4.351 -2.497 5.376 hybrid contribution 1.634 0.396 1.509 2.259 sum -0.297 4.748 -0.988 4.859 Atomic orbital electron populations 1.23981 0.93419 1.03909 1.03946 1.21609 0.94572 0.85987 1.01846 1.46222 1.04616 1.04685 1.56461 1.77132 1.23887 0.87592 1.28149 1.24455 0.90039 1.00824 0.97507 1.21413 1.00041 0.91594 1.20148 1.22768 0.84712 0.98802 0.94312 1.17712 0.89370 0.90609 0.96118 0.92364 1.20971 1.37176 0.99289 0.97970 0.93424 1.25504 0.94512 0.95895 1.00572 1.69955 1.42837 1.04186 1.36488 0.85780 0.78300 0.77407 0.81440 1.21561 1.20603 1.19184 1.21512 0.93957 0.91073 0.97105 1.58441 1.21684 1.39555 1.17857 0.87735 0.83830 0.83220 0.76371 0.82613 0.92634 0.93283 0.96148 0.84908 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.54 14.35 67.01 0.96 -6.58 15 2 C 0.07 3.02 10.47 82.66 0.87 3.89 15 3 N -0.34 -15.56 3.80 -182.41 -0.69 -16.25 15 4 N -0.35 -14.53 11.73 -56.98 -0.67 -15.20 15 5 C 0.06 2.06 12.02 85.25 1.02 3.08 15 6 C -0.30 -11.89 10.00 22.01 0.22 -11.67 15 7 C 0.12 5.39 5.83 41.27 0.24 5.63 15 8 C 0.08 3.92 2.47 -12.29 -0.03 3.88 15 9 H 0.06 3.13 5.97 -2.38 -0.01 3.11 15 10 C -0.52 -26.24 7.45 25.60 0.19 -26.05 15 11 H 0.05 2.46 7.82 -2.91 -0.02 2.43 15 12 C 0.04 1.92 5.45 84.65 0.46 2.38 15 13 N -0.90 -47.73 12.62 21.45 0.27 -47.46 15 14 Si 0.94 41.77 29.54 68.60 2.03 43.79 15 15 H -0.29 -13.10 7.11 99.48 0.71 -12.40 15 16 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 18 C 0.10 3.84 5.69 86.30 0.49 4.34 15 19 N -0.84 -32.42 9.57 -186.72 -1.79 -34.21 15 20 H 0.10 3.72 7.54 -2.91 -0.02 3.70 15 21 H 0.14 4.12 8.06 -2.91 -0.02 4.10 15 22 H 0.15 6.96 7.21 -2.91 -0.02 6.94 15 23 H 0.22 5.42 8.06 -2.91 -0.02 5.40 15 24 H 0.16 5.36 7.54 -2.91 -0.02 5.34 15 25 H 0.26 13.51 8.31 -92.71 -0.77 12.74 15 26 H 0.05 1.88 8.14 -2.38 -0.02 1.86 15 27 H 0.02 0.78 7.57 -2.38 -0.02 0.76 15 28 H 0.34 10.39 9.08 -89.69 -0.81 9.57 15 29 H 0.34 13.96 8.25 -89.70 -0.74 13.22 15 Total: -1.00 -59.02 255.85 3.18 -55.84 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.39 Total: 34.58 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 4.42 Total: -21.10 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -2.88 Total: -113.11 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -59.02 3.18 -55.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147652.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.464 kcal (2) G-P(sol) polarization free energy of solvation -59.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds