Wall clock time and date at job start Mon Mar 30 2020 02:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.47956 * 110.99720 * 2 1 4 4 C 1.53933 * 86.17939 * 222.41945 * 3 2 1 5 5 N 1.46508 * 113.73658 * 138.07998 * 4 3 2 6 6 C 1.36418 * 126.55338 * 300.02643 * 5 4 3 7 7 C 1.36219 * 107.18840 * 179.97438 * 6 5 4 8 8 N 1.32749 * 108.62123 * 359.74171 * 7 6 5 9 9 C 1.32978 * 109.22669 * 0.42919 * 8 7 6 10 10 C 1.40001 * 125.96238 * 179.83199 * 9 8 7 11 11 H 1.08001 * 119.99678 * 185.96787 * 10 9 8 12 12 C 1.40235 * 120.00318 * 5.96642 * 10 9 8 13 13 N 1.30696 * 119.99822 * 6.48968 * 12 10 9 14 14 Si 1.86799 * 120.00096 * 186.49040 * 12 10 9 15 15 H 1.48499 * 109.46992 * 265.00985 * 14 12 10 16 16 H 1.48497 * 109.47085 * 25.01373 * 14 12 10 17 17 H 1.48501 * 109.46719 * 145.01521 * 14 12 10 18 18 C 1.47958 * 110.99683 * 260.64373 * 2 1 3 19 19 H 1.09000 * 109.46885 * 59.99911 * 1 2 3 20 20 H 1.09004 * 109.46818 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46856 * 300.00026 * 1 2 3 22 22 H 1.08998 * 113.76392 * 108.10273 * 3 2 1 23 23 H 1.09001 * 113.76133 * 336.73423 * 3 2 1 24 24 H 1.09001 * 113.73652 * 269.25474 * 4 3 2 25 25 H 1.07993 * 126.40509 * 359.97438 * 6 5 4 26 26 H 1.08007 * 125.68445 * 180.02562 * 7 6 5 27 27 H 0.96998 * 119.99645 * 180.02562 * 13 12 10 28 28 H 1.08991 * 113.76247 * 23.26097 * 18 2 1 29 29 H 1.09010 * 113.75566 * 251.89765 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8793 -1.0361 5 7 3.2509 1.8155 -2.1393 6 6 2.3182 2.2755 -3.0222 7 6 2.9566 3.1216 -3.8778 8 7 4.2368 3.1869 -3.5328 9 6 4.4481 2.3991 -2.4826 10 6 5.6739 2.2026 -1.8355 11 1 5.7579 1.4664 -1.0498 12 6 6.7928 2.9618 -2.2076 13 7 6.6637 3.9380 -3.0669 14 14 8.4677 2.5776 -1.4750 15 1 8.7066 3.4534 -0.2999 16 1 8.5072 1.1556 -1.0489 17 1 9.5206 2.8185 -2.4941 18 6 1.9992 -0.2246 -1.3630 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.4460 1.6803 0.9482 23 1 1.3010 2.1197 -0.3941 24 1 3.9459 0.5069 -0.5954 25 1 1.2697 2.0172 -3.0395 26 1 2.4968 3.6543 -4.6972 27 1 7.4377 4.4628 -3.3245 28 1 1.3010 0.0441 -2.1556 29 1 2.4460 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261155012.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:03 Heat of formation + Delta-G solvation = 98.299715 kcal Electronic energy + Delta-G solvation = -13450.112396 eV Core-core repulsion = 11182.570591 eV Total energy + Delta-G solvation = -2267.541806 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.44088 -38.71232 -33.30747 -32.00302 -28.81717 -28.58948 -25.92757 -24.92199 -23.49211 -20.59796 -19.83150 -18.30262 -17.22162 -15.75186 -15.49678 -14.83005 -14.78015 -13.75253 -13.15317 -13.03621 -12.64341 -12.51662 -12.37559 -11.62847 -11.45746 -11.23729 -11.12885 -10.65594 -10.50002 -10.41194 -10.05173 -9.16581 -8.86168 -7.94282 -7.73312 -7.04342 -6.39857 -4.25278 3.05837 3.18122 3.21431 3.59974 3.90228 4.08049 4.43493 4.73336 4.91007 5.15575 5.20949 5.36241 5.53544 5.65221 5.71971 5.81645 5.86300 6.01068 6.23460 6.33807 6.35613 6.58087 7.07333 7.15537 7.31418 7.63258 8.10971 8.25497 8.59587 8.98638 9.34022 10.26127 10.54961 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.040571 B = 0.009989 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.978910 B = 2802.405866 C = 3339.629833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.485 5.485 3 C -0.009 4.009 4 C 0.135 3.865 5 N -0.498 5.498 6 C -0.181 4.181 7 C -0.010 4.010 8 N -0.522 5.522 9 C 0.380 3.620 10 C -0.464 4.464 11 H 0.077 0.923 12 C 0.084 3.916 13 N -0.744 5.744 14 Si 0.909 3.091 15 H -0.272 1.272 16 H -0.263 1.263 17 H -0.277 1.277 18 C -0.007 4.007 19 H 0.034 0.966 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.121 0.879 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.272 0.728 28 H 0.076 0.924 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.344 -5.412 4.754 9.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.207 5.207 3 C -0.138 4.138 4 C 0.028 3.972 5 N -0.188 5.188 6 C -0.310 4.310 7 C -0.163 4.163 8 N -0.242 5.242 9 C 0.137 3.863 10 C -0.503 4.503 11 H 0.095 0.905 12 C -0.139 4.139 13 N -0.369 5.369 14 Si 0.733 3.267 15 H -0.198 1.198 16 H -0.188 1.188 17 H -0.202 1.202 18 C -0.137 4.137 19 H 0.052 0.948 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.110 0.890 23 H 0.092 0.908 24 H 0.139 0.861 25 H 0.146 0.854 26 H 0.150 0.850 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.584 -5.280 4.825 9.074 hybrid contribution -0.506 -0.108 0.068 0.522 sum -6.090 -5.388 4.893 9.490 Atomic orbital electron populations 1.22817 0.89784 1.02016 1.00987 1.68397 1.08919 1.19012 1.24396 1.24479 0.97564 0.91109 1.00696 1.22745 0.98285 0.88994 0.87206 1.45378 1.09323 1.38691 1.25421 1.21602 0.94306 1.12801 1.02289 1.22109 0.93219 1.00815 1.00166 1.71261 1.13466 1.24600 1.14920 1.20307 0.85039 0.89437 0.91473 1.18102 0.91211 1.21317 1.19661 0.90457 1.25678 1.00151 0.93810 0.94297 1.69995 1.30847 1.12795 1.23235 0.86310 0.81469 0.79705 0.79177 1.19773 1.18752 1.20227 1.24482 0.97594 1.00561 0.91049 0.94772 0.91356 0.91519 0.88983 0.90809 0.86112 0.85356 0.84979 0.91712 0.90615 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.07 0.58 0.50 15 2 N -0.48 -7.30 6.56 -246.79 -1.62 -8.92 15 3 C -0.01 -0.15 7.67 -2.77 -0.02 -0.17 15 4 C 0.13 2.57 4.69 -69.64 -0.33 2.25 15 5 N -0.50 -11.76 3.00 -110.13 -0.33 -12.09 15 6 C -0.18 -4.15 10.42 -16.24 -0.17 -4.32 15 7 C -0.01 -0.26 11.85 -17.88 -0.21 -0.48 15 8 N -0.52 -15.30 9.48 -12.72 -0.12 -15.42 15 9 C 0.38 10.61 7.41 -155.61 -1.15 9.46 15 10 C -0.46 -12.64 9.05 -38.17 -0.35 -12.98 15 11 H 0.08 1.94 6.90 -52.49 -0.36 1.58 15 12 C 0.08 2.23 5.49 -17.29 -0.09 2.14 15 13 N -0.74 -20.97 11.96 55.56 0.66 -20.31 15 14 Si 0.91 19.25 29.57 -169.99 -5.03 14.23 15 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 16 H -0.26 -5.44 7.11 56.52 0.40 -5.04 15 17 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 18 C -0.01 -0.12 7.53 -2.77 -0.02 -0.14 15 19 H 0.03 0.42 7.62 -51.93 -0.40 0.03 15 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.09 1.45 8.14 -51.93 -0.42 1.02 15 23 H 0.07 1.26 7.72 -51.93 -0.40 0.86 15 24 H 0.12 2.34 7.05 -51.93 -0.37 1.97 15 25 H 0.13 2.53 7.50 -52.49 -0.39 2.14 15 26 H 0.13 2.97 8.06 -52.48 -0.42 2.54 15 27 H 0.27 6.96 8.29 -40.82 -0.34 6.63 15 28 H 0.08 1.22 6.44 -51.93 -0.33 0.89 15 29 H 0.09 1.36 8.14 -51.92 -0.42 0.93 15 LS Contribution 247.78 15.07 3.73 3.73 Total: -1.00 -31.00 247.78 -7.96 -38.96 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.50 Total: 3.57 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.76 Total: -3.74 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -1.40 Total: -56.74 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.00 -7.96 -38.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155012.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.255 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds