Wall clock time and date at job start Mon Mar 30 2020 02:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.47956 * 110.99720 * 2 1 4 4 C 1.53933 * 86.17939 * 222.41945 * 3 2 1 5 5 N 1.46508 * 113.73658 * 138.07998 * 4 3 2 6 6 C 1.36418 * 126.55338 * 300.02643 * 5 4 3 7 7 C 1.36219 * 107.18840 * 179.97438 * 6 5 4 8 8 N 1.32749 * 108.62123 * 359.74171 * 7 6 5 9 9 C 1.32978 * 109.22669 * 0.42919 * 8 7 6 10 10 C 1.40001 * 125.96238 * 179.83199 * 9 8 7 11 11 H 1.08001 * 119.99678 * 185.96787 * 10 9 8 12 12 C 1.40235 * 120.00318 * 5.96642 * 10 9 8 13 13 N 1.30696 * 119.99822 * 6.48968 * 12 10 9 14 14 Si 1.86799 * 120.00096 * 186.49040 * 12 10 9 15 15 H 1.48499 * 109.46992 * 265.00985 * 14 12 10 16 16 H 1.48497 * 109.47085 * 25.01373 * 14 12 10 17 17 H 1.48501 * 109.46719 * 145.01521 * 14 12 10 18 18 C 1.47958 * 110.99683 * 260.64373 * 2 1 3 19 19 H 1.09000 * 109.46885 * 59.99911 * 1 2 3 20 20 H 1.09004 * 109.46818 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46856 * 300.00026 * 1 2 3 22 22 H 1.08998 * 113.76392 * 108.10273 * 3 2 1 23 23 H 1.09001 * 113.76133 * 336.73423 * 3 2 1 24 24 H 1.09001 * 113.73652 * 269.25474 * 4 3 2 25 25 H 1.07993 * 126.40509 * 359.97438 * 6 5 4 26 26 H 1.08007 * 125.68445 * 180.02562 * 7 6 5 27 27 H 0.96998 * 119.99645 * 180.02562 * 13 12 10 28 28 H 1.08991 * 113.76247 * 23.26097 * 18 2 1 29 29 H 1.09010 * 113.75566 * 251.89765 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8793 -1.0361 5 7 3.2509 1.8155 -2.1393 6 6 2.3182 2.2755 -3.0222 7 6 2.9566 3.1216 -3.8778 8 7 4.2368 3.1869 -3.5328 9 6 4.4481 2.3991 -2.4826 10 6 5.6739 2.2026 -1.8355 11 1 5.7579 1.4664 -1.0498 12 6 6.7928 2.9618 -2.2076 13 7 6.6637 3.9380 -3.0669 14 14 8.4677 2.5776 -1.4750 15 1 8.7066 3.4534 -0.2999 16 1 8.5072 1.1556 -1.0489 17 1 9.5206 2.8185 -2.4941 18 6 1.9992 -0.2246 -1.3630 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.4460 1.6803 0.9482 23 1 1.3010 2.1197 -0.3941 24 1 3.9459 0.5069 -0.5954 25 1 1.2697 2.0172 -3.0395 26 1 2.4968 3.6543 -4.6972 27 1 7.4377 4.4628 -3.3245 28 1 1.3010 0.0441 -2.1556 29 1 2.4460 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261155012.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:03 Heat of formation + Delta-G solvation = 76.168416 kcal Electronic energy + Delta-G solvation = -13451.072082 eV Core-core repulsion = 11182.570591 eV Total energy + Delta-G solvation = -2268.501491 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.14670 -40.24785 -35.26699 -33.65028 -30.62854 -30.16463 -27.23423 -26.87224 -24.85612 -22.21409 -21.74978 -19.95465 -18.93739 -17.66558 -16.79116 -16.49436 -16.14023 -15.26547 -14.82844 -14.67786 -14.40319 -13.85500 -13.78276 -13.37210 -12.98937 -12.86579 -12.59098 -12.37941 -12.03986 -11.95892 -11.67554 -11.07092 -10.12740 -9.84287 -9.67583 -9.02721 -8.34252 -6.27689 1.35947 1.44958 1.59914 1.78659 2.25619 2.46770 2.76486 2.95998 3.45540 3.74056 3.80660 4.04927 4.06010 4.37207 4.47132 4.54180 4.56496 4.70359 4.71863 4.89689 4.96444 5.18370 5.19268 5.38705 5.70468 5.89569 6.19182 6.29841 6.68361 7.01536 7.39018 8.29511 8.63709 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.040571 B = 0.009989 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.978910 B = 2802.405866 C = 3339.629833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.482 5.482 3 C 0.001 3.999 4 C 0.110 3.890 5 N -0.494 5.494 6 C -0.148 4.148 7 C -0.055 4.055 8 N -0.568 5.568 9 C 0.343 3.657 10 C -0.493 4.493 11 H 0.087 0.913 12 C 0.035 3.965 13 N -0.795 5.795 14 Si 0.991 3.009 15 H -0.263 1.263 16 H -0.254 1.254 17 H -0.273 1.273 18 C 0.006 3.994 19 H 0.037 0.963 20 H 0.085 0.915 21 H 0.078 0.922 22 H 0.098 0.902 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.168 0.832 26 H 0.151 0.849 27 H 0.276 0.724 28 H 0.079 0.921 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.239 -6.825 6.037 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.204 5.204 3 C -0.128 4.128 4 C 0.005 3.995 5 N -0.183 5.183 6 C -0.278 4.278 7 C -0.206 4.206 8 N -0.290 5.290 9 C 0.098 3.902 10 C -0.532 4.532 11 H 0.105 0.895 12 C -0.184 4.184 13 N -0.421 5.421 14 Si 0.812 3.188 15 H -0.188 1.188 16 H -0.177 1.177 17 H -0.198 1.198 18 C -0.123 4.123 19 H 0.055 0.945 20 H 0.104 0.896 21 H 0.097 0.903 22 H 0.116 0.884 23 H 0.090 0.910 24 H 0.131 0.869 25 H 0.186 0.814 26 H 0.168 0.832 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.525 -6.720 6.131 11.195 hybrid contribution -0.418 0.286 -0.326 0.603 sum -6.943 -6.434 5.805 11.104 Atomic orbital electron populations 1.22918 0.87639 1.03463 1.01765 1.68418 1.11007 1.17526 1.23486 1.24378 0.96515 0.92003 0.99929 1.23184 0.99376 0.89908 0.87008 1.45603 1.08208 1.38451 1.26023 1.22137 0.95555 1.10012 1.00115 1.22567 0.92727 1.03056 1.02212 1.71130 1.15684 1.25961 1.16228 1.20600 0.86673 0.90736 0.92174 1.18515 0.91958 1.22247 1.20510 0.89463 1.26731 1.04307 0.93071 0.94336 1.70131 1.32311 1.14336 1.25324 0.85075 0.75562 0.79893 0.78309 1.18794 1.17696 1.19823 1.24420 0.96333 0.99824 0.91770 0.94481 0.89619 0.90275 0.88368 0.91038 0.86946 0.81445 0.83177 0.91393 0.90245 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 9.65 127.69 1.23 1.04 15 2 N -0.48 -12.97 6.56 -934.70 -6.13 -19.10 15 3 C 0.00 0.04 7.67 86.41 0.66 0.71 15 4 C 0.11 4.07 4.69 46.56 0.22 4.28 15 5 N -0.49 -23.09 3.00 -502.35 -1.51 -24.59 15 6 C -0.15 -6.58 10.42 83.51 0.87 -5.71 15 7 C -0.05 -2.80 11.85 84.08 1.00 -1.81 15 8 N -0.57 -34.27 9.48 -194.17 -1.84 -36.12 15 9 C 0.34 19.56 7.41 133.59 0.99 20.55 15 10 C -0.49 -27.42 9.05 23.18 0.21 -27.21 15 11 H 0.09 4.45 6.90 -2.91 -0.02 4.43 15 12 C 0.03 1.85 5.49 85.35 0.47 2.32 15 13 N -0.79 -46.29 11.96 21.88 0.26 -46.03 15 14 Si 0.99 39.90 29.57 68.60 2.03 41.93 15 15 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 16 H -0.25 -9.65 7.11 99.48 0.71 -8.94 15 17 H -0.27 -10.70 7.11 99.48 0.71 -10.00 15 18 C 0.01 0.17 7.53 86.40 0.65 0.82 15 19 H 0.04 0.77 7.62 -2.39 -0.02 0.75 15 20 H 0.09 1.53 8.14 -2.38 -0.02 1.51 15 21 H 0.08 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.10 2.90 8.14 -2.39 -0.02 2.88 15 23 H 0.07 2.25 7.72 -2.39 -0.02 2.23 15 24 H 0.11 4.30 7.05 -2.39 -0.02 4.28 15 25 H 0.17 6.03 7.50 -2.91 -0.02 6.01 15 26 H 0.15 6.79 8.06 -2.91 -0.02 6.76 15 27 H 0.28 14.61 8.29 -92.71 -0.77 13.85 15 28 H 0.08 2.28 6.44 -2.39 -0.02 2.26 15 29 H 0.10 2.78 8.14 -2.38 -0.02 2.76 15 Total: -1.00 -68.34 247.78 0.25 -68.09 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.14 Total: 20.83 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 6.30 Total: -5.01 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -9.22 Total: -125.84 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -68.34 0.25 -68.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155012.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.258 kcal (2) G-P(sol) polarization free energy of solvation -68.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds