Wall clock time and date at job start Mon Mar 30 2020 02:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47326 * 2 1 4 4 C 1.50704 * 109.47048 * 239.99399 * 2 1 3 5 5 H 1.07994 * 120.00201 * 240.00242 * 4 2 1 6 6 C 1.37876 * 119.99500 * 59.73347 * 4 2 1 7 7 N 1.31515 * 120.00124 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00061 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47261 * 89.99156 * 8 6 4 10 10 H 1.48493 * 109.47218 * 209.99919 * 8 6 4 11 11 H 1.48505 * 109.46678 * 329.99403 * 8 6 4 12 12 N 1.46500 * 109.46682 * 120.00390 * 2 1 3 13 13 C 1.46501 * 120.00798 * 55.40704 * 12 2 1 14 14 C 1.39745 * 119.99674 * 235.40902 * 12 2 1 15 15 C 1.39269 * 120.87562 * 185.45426 * 14 12 2 16 16 N 1.32268 * 119.00798 * 179.71572 * 15 14 12 17 17 C 1.31791 * 120.89810 * 0.56899 * 16 15 14 18 18 N 1.31793 * 121.93203 * 359.70442 * 17 16 15 19 19 C 1.32259 * 120.89925 * 359.97438 * 18 17 16 20 20 H 1.09000 * 109.46315 * 60.00150 * 1 2 3 21 21 H 1.08998 * 109.47326 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47152 * 300.00389 * 1 2 3 23 23 H 0.97006 * 119.99784 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.46693 * 90.00125 * 13 12 2 25 25 H 1.08990 * 109.47177 * 209.99980 * 13 12 2 26 26 H 1.08996 * 109.46547 * 330.00391 * 13 12 2 27 27 H 1.07999 * 120.49572 * 359.97438 * 15 14 12 28 28 H 1.08002 * 119.03248 * 179.72411 * 17 16 15 29 29 H 1.08007 * 120.49495 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6947 -0.2428 -2.4827 7 7 0.9339 0.8232 -2.6033 8 14 2.3179 -1.1230 -4.0079 9 1 1.3434 -2.1695 -4.4084 10 1 2.4764 -0.1448 -5.1139 11 1 3.6294 -1.7544 -3.7138 12 7 2.0183 -0.6907 1.1962 13 6 1.5834 -2.0606 1.4800 14 6 2.8989 -0.0428 2.0665 15 6 3.4625 -0.7180 3.1464 16 7 4.2959 -0.0703 3.9436 17 6 4.5856 1.1980 3.7332 18 7 4.0690 1.8733 2.7262 19 6 3.2320 1.2966 1.8799 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.6966 1.1525 -3.4844 24 1 2.2732 -2.7645 1.0145 25 1 1.5718 -2.2221 2.5578 26 1 0.5817 -2.2142 1.0787 27 1 3.2259 -1.7560 3.3277 28 1 5.2665 1.6987 4.4057 29 1 2.8128 1.8560 1.0566 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163585.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:41 Heat of formation + Delta-G solvation = 40.610493 kcal Electronic energy + Delta-G solvation = -13412.855546 eV Core-core repulsion = 11142.812148 eV Total energy + Delta-G solvation = -2270.043398 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.77093 -38.48589 -35.12514 -34.44933 -32.23136 -30.55373 -27.62128 -27.19572 -25.23346 -24.01109 -21.62775 -18.95295 -18.58177 -17.86693 -17.43369 -16.51956 -15.89291 -15.37583 -14.89442 -14.61150 -14.48588 -14.15786 -13.50724 -13.04712 -12.89767 -12.75784 -12.57176 -12.24838 -12.19614 -11.91635 -11.65530 -11.49432 -10.94482 -10.54770 -10.03424 -8.39027 -8.04521 -6.32309 0.20090 0.36957 1.40095 1.43072 1.51234 2.27371 2.46970 3.02534 3.10756 3.48649 3.53400 3.68276 4.00522 4.34163 4.57767 4.65309 4.78095 4.91822 4.93568 5.01244 5.09038 5.32096 5.54078 5.63246 5.84580 6.08872 6.13706 6.33038 6.68252 6.80156 7.31961 7.39037 8.85715 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.041614 B = 0.009223 C = 0.008918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.695906 B = 3035.089568 C = 3138.805009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.266 3.734 3 H 0.028 0.972 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.024 3.976 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.598 5.598 13 C 0.092 3.908 14 C 0.129 3.871 15 C 0.055 3.945 16 N -0.487 5.487 17 C 0.191 3.809 18 N -0.495 5.495 19 C 0.044 3.956 20 H 0.071 0.929 21 H 0.042 0.958 22 H 0.026 0.974 23 H 0.266 0.734 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.186 0.814 28 H 0.216 0.784 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -3.818 7.448 8.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.165 3.835 3 H 0.046 0.954 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.302 5.302 13 C -0.050 4.050 14 C 0.016 3.984 15 C -0.118 4.118 16 N -0.200 5.200 17 C -0.098 4.098 18 N -0.207 5.207 19 C -0.128 4.128 20 H 0.090 0.910 21 H 0.061 0.939 22 H 0.045 0.955 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.203 0.797 28 H 0.232 0.768 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.673 -3.349 7.782 8.635 hybrid contribution -0.391 -0.574 -1.754 1.887 sum 1.281 -3.922 6.028 7.305 Atomic orbital electron populations 1.21949 0.97253 1.00136 1.00380 1.18731 0.91667 0.92202 0.80944 0.95407 1.21597 1.31757 1.13200 0.91328 0.92905 1.25568 0.95004 0.95596 1.01509 1.69959 1.36765 1.23763 1.24521 0.85588 0.78656 0.78402 0.79166 1.19769 1.20982 1.20065 1.47146 1.45299 1.14819 1.22966 1.21703 1.00522 0.81510 1.01297 1.19900 0.92017 0.94008 0.92451 1.23037 0.95822 1.01350 0.91640 1.68163 1.12712 1.10788 1.28317 1.24945 1.00974 0.88097 0.95786 1.68156 1.08276 1.40182 1.04118 1.22866 0.98194 0.91939 0.99826 0.91043 0.93894 0.95484 0.92513 0.93372 0.89660 0.90927 0.79733 0.76786 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 8.85 71.98 0.64 -5.44 15 2 C 0.27 12.29 2.60 44.25 0.12 12.41 15 3 H 0.03 1.42 5.41 -2.39 -0.01 1.41 15 4 C -0.54 -27.48 8.45 25.60 0.22 -27.26 15 5 H 0.05 2.71 7.78 -2.91 -0.02 2.69 15 6 C 0.02 1.22 5.30 84.65 0.45 1.67 15 7 N -0.91 -48.80 11.30 21.45 0.24 -48.56 15 8 Si 0.96 41.43 29.54 68.60 2.03 43.46 15 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 12 N -0.60 -23.11 2.89 -701.48 -2.03 -25.13 15 13 C 0.09 2.82 9.56 127.77 1.22 4.04 15 14 C 0.13 4.83 6.57 38.38 0.25 5.09 15 15 C 0.05 1.77 10.43 84.88 0.89 2.66 15 16 N -0.49 -15.93 10.43 -199.56 -2.08 -18.01 15 17 C 0.19 6.14 12.28 180.89 2.22 8.36 15 18 N -0.49 -18.39 10.43 -199.55 -2.08 -20.47 15 19 C 0.04 1.76 10.57 84.88 0.90 2.65 15 20 H 0.07 3.52 6.05 -2.39 -0.01 3.50 15 21 H 0.04 1.76 6.53 -2.39 -0.02 1.74 15 22 H 0.03 1.07 8.14 -2.39 -0.02 1.05 15 23 H 0.27 13.60 8.31 -92.70 -0.77 12.83 15 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 15 25 H 0.08 2.01 6.51 -2.39 -0.02 2.00 15 26 H 0.07 2.24 6.20 -2.39 -0.01 2.22 15 27 H 0.19 4.76 6.44 -2.91 -0.02 4.74 15 28 H 0.22 5.17 8.06 -2.91 -0.02 5.15 15 29 H 0.15 6.44 5.88 -2.91 -0.02 6.42 15 Total: -1.00 -56.93 243.96 4.13 -52.80 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.16 Total: 11.75 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 6.89 Total: 4.16 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -5.95 Total: -112.17 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -56.93 4.13 -52.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163585.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.413 kcal (2) G-P(sol) polarization free energy of solvation -56.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds