Wall clock time and date at job start Mon Mar 30 2020 02:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99985 * 2 1 4 4 H 1.48502 * 109.46898 * 264.83269 * 3 2 1 5 5 H 1.48503 * 109.47028 * 24.82923 * 3 2 1 6 6 H 1.48494 * 109.47267 * 144.83163 * 3 2 1 7 7 C 1.37884 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99328 * 4.19958 * 7 2 1 9 9 C 1.50701 * 119.99945 * 184.47022 * 7 2 1 10 10 H 1.08994 * 109.47014 * 354.53778 * 9 7 2 11 11 C 1.52999 * 109.46772 * 114.53267 * 9 7 2 12 12 C 1.53002 * 117.49997 * 8.87675 * 11 9 7 13 13 C 1.53003 * 117.50317 * 300.21558 * 11 9 7 14 14 N 1.46899 * 109.47113 * 234.53002 * 9 7 2 15 15 C 1.48553 * 110.99716 * 175.41788 * 14 9 7 16 16 C 1.54382 * 104.59513 * 200.96021 * 15 14 9 17 17 H 1.09002 * 118.15719 * 244.14922 * 16 15 14 18 18 C 1.57015 * 118.21026 * 86.27034 * 16 15 14 19 19 C 1.53004 * 59.66383 * 268.82546 * 18 16 15 20 20 H 1.08999 * 119.52604 * 247.59571 * 19 18 16 21 21 C 1.48563 * 110.99710 * 60.00610 * 14 9 7 22 22 H 0.97001 * 120.00028 * 0.02562 * 1 2 3 23 23 H 1.09003 * 115.55285 * 154.54375 * 11 9 7 24 24 H 1.09002 * 117.49639 * 359.97438 * 12 11 9 25 25 H 1.08996 * 117.50109 * 145.01837 * 12 11 9 26 26 H 1.08994 * 117.50377 * 214.97832 * 13 11 9 27 27 H 1.09008 * 117.49364 * 359.97438 * 13 11 9 28 28 H 1.09000 * 110.42028 * 319.74592 * 15 14 9 29 29 H 1.09006 * 110.41091 * 82.19091 * 15 14 9 30 30 H 1.08998 * 116.97628 * 161.28931 * 18 16 15 31 31 H 1.09000 * 118.44449 * 15.69991 * 18 16 15 32 32 H 1.09009 * 110.41065 * 277.81638 * 21 14 9 33 33 H 1.09002 * 110.41448 * 40.25810 * 21 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6058 1.9834 -1.3944 5 1 1.3961 2.6818 0.5879 6 1 3.4877 1.4742 0.8064 7 6 2.0045 -1.1941 0.0005 8 1 1.4667 -2.1281 -0.0675 9 6 3.5081 -1.1959 0.1023 10 1 3.8758 -0.1704 0.0687 11 6 3.9291 -1.8456 1.4219 12 6 2.8411 -2.5322 2.2501 13 6 3.4329 -1.2000 2.7173 14 7 4.0739 -1.9561 -1.0202 15 6 5.5579 -1.8878 -1.0151 16 6 5.9680 -2.2302 -2.4635 17 1 6.5461 -3.1386 -2.6333 18 6 6.0181 -1.0658 -3.5157 19 6 4.7361 -1.8784 -3.3227 20 1 4.3887 -2.5318 -4.1230 21 6 3.6853 -1.3531 -2.3212 22 1 -0.4850 0.8401 -0.0004 23 1 4.9241 -2.2906 1.4305 24 1 1.8253 -2.5206 1.8549 25 1 3.1204 -3.4285 2.8038 26 1 4.1012 -1.2205 3.5780 27 1 2.8068 -0.3120 2.6292 28 1 5.8914 -0.8838 -0.7527 29 1 5.9697 -2.6199 -0.3203 30 1 6.5941 -1.2443 -4.4237 31 1 6.0207 -0.0380 -3.1529 32 1 2.6870 -1.6825 -2.6098 33 1 3.7257 -0.2654 -2.2632 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:38 Heat of formation + Delta-G solvation = 51.772621 kcal Electronic energy + Delta-G solvation = -14079.904826 eV Core-core repulsion = 11913.885798 eV Total energy + Delta-G solvation = -2166.019028 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.68639 -38.32588 -34.91026 -34.06739 -29.69597 -29.11484 -25.83940 -23.69890 -23.09812 -21.75549 -20.99793 -20.19361 -18.96120 -17.39622 -16.57729 -16.33277 -15.44776 -15.19784 -14.85398 -14.55834 -14.24278 -13.50793 -13.28289 -13.17227 -12.95002 -12.28962 -12.18820 -12.06139 -11.93385 -11.82354 -11.30778 -11.03328 -10.86071 -10.84981 -10.68065 -10.47096 -9.05567 -8.31186 -6.31853 1.21934 1.25291 1.32955 2.25896 2.67225 2.92949 3.12303 3.45447 3.72341 3.82172 4.07216 4.23514 4.27836 4.33157 4.38426 4.49010 4.69604 4.76023 4.79092 4.86879 4.89361 4.91050 5.02270 5.12750 5.18798 5.29408 5.33933 5.37558 5.59948 5.72098 6.13880 6.20305 6.62588 6.75769 7.32812 8.85469 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.014241 C = 0.011317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.445878 B = 1965.735666 C = 2473.565326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.025 3.975 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.250 1.250 7 C -0.476 4.476 8 H 0.038 0.962 9 C 0.194 3.806 10 H 0.004 0.996 11 C -0.142 4.142 12 C -0.163 4.163 13 C -0.176 4.176 14 N -0.512 5.512 15 C 0.052 3.948 16 C -0.160 4.160 17 H 0.139 0.861 18 C -0.141 4.141 19 C -0.173 4.173 20 H 0.124 0.876 21 C 0.078 3.922 22 H 0.264 0.736 23 H 0.105 0.895 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.028 0.972 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.238 -1.721 -2.525 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.173 4.173 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.174 1.174 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.087 3.913 10 H 0.021 0.979 11 C -0.161 4.161 12 C -0.199 4.199 13 C -0.213 4.213 14 N -0.236 5.236 15 C -0.076 4.076 16 C -0.179 4.179 17 H 0.157 0.843 18 C -0.178 4.178 19 C -0.192 4.192 20 H 0.142 0.858 21 C -0.050 4.050 22 H 0.074 0.926 23 H 0.123 0.877 24 H 0.094 0.906 25 H 0.118 0.882 26 H 0.130 0.870 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.109 0.891 30 H 0.149 0.851 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 12.860 -2.159 -2.435 13.265 hybrid contribution -0.323 1.758 -0.040 1.787 sum 12.536 -0.401 -2.475 12.785 Atomic orbital electron populations 1.70006 1.07702 1.27639 1.52805 1.25680 0.95217 1.01609 0.94763 0.86240 0.79734 0.80732 0.79144 1.19801 1.21151 1.17390 1.20820 0.90139 0.92609 1.47939 0.94345 1.19441 0.93514 0.90490 0.87849 0.97890 1.22354 0.97799 1.04169 0.91759 1.22824 0.98897 0.95166 1.03061 1.22792 1.04033 0.96744 0.97768 1.65621 1.05376 1.50834 1.01787 1.22708 0.89169 0.99507 0.96197 1.24150 1.02291 1.01171 0.90245 0.84315 1.23789 0.98402 0.95173 1.00425 1.23469 0.89723 1.05092 1.00906 0.85801 1.22247 0.98154 0.95015 0.89611 0.92632 0.87685 0.90607 0.88171 0.86954 0.91771 0.95349 0.89099 0.85146 0.90121 0.92366 0.96906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.14 13.96 21.45 0.30 -57.84 16 2 C 0.03 1.46 5.47 84.66 0.46 1.92 16 3 Si 0.92 44.55 27.20 68.60 1.87 46.41 16 4 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.25 -11.49 6.40 99.48 0.64 -10.85 16 7 C -0.48 -26.63 6.06 25.60 0.16 -26.47 16 8 H 0.04 2.45 7.45 -2.91 -0.02 2.43 16 9 C 0.19 9.13 1.59 44.17 0.07 9.20 16 10 H 0.00 0.18 4.35 -2.39 -0.01 0.17 16 11 C -0.14 -5.84 5.68 -10.79 -0.06 -5.90 16 12 C -0.16 -6.69 9.71 30.62 0.30 -6.39 16 13 C -0.18 -6.87 10.02 30.62 0.31 -6.57 16 14 N -0.51 -21.75 5.19 -860.72 -4.47 -26.21 16 15 C 0.05 1.73 5.54 86.45 0.48 2.21 16 16 C -0.16 -4.40 7.29 -8.49 -0.06 -4.46 16 17 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 18 C -0.14 -3.49 10.29 32.01 0.33 -3.16 16 19 C -0.17 -5.36 6.98 -9.90 -0.07 -5.43 16 20 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 21 C 0.08 3.24 5.51 86.45 0.48 3.72 16 22 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 23 H 0.11 3.76 6.79 -2.39 -0.02 3.75 16 24 H 0.08 3.76 6.14 -2.39 -0.01 3.74 16 25 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 26 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 27 H 0.06 2.84 8.14 -2.38 -0.02 2.82 16 28 H 0.03 0.98 7.90 -2.39 -0.02 0.96 16 29 H 0.09 2.75 7.31 -2.38 -0.02 2.74 16 30 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 2.71 7.98 -2.38 -0.02 2.69 16 33 H 0.01 0.57 7.93 -2.39 -0.02 0.55 16 Total: -1.00 -63.77 262.28 1.09 -62.68 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 1.01 Total: 16.29 kcal Atomic # 6 Polarization: -43.71 SS G_CDS: 2.39 Total: -41.32 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -4.17 Total: -84.06 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.87 Total: 46.41 kcal Total: -63.77 1.09 -62.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.455 kcal (2) G-P(sol) polarization free energy of solvation -63.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds