Wall clock time and date at job start Mon Mar 30 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29104 * 126.01428 * 2 1 4 4 N 1.29020 * 110.26149 * 180.08570 * 3 2 1 5 5 C 1.32907 * 108.63301 * 0.02562 * 4 3 2 6 6 C 1.34400 * 126.00246 * 180.02562 * 2 1 3 7 7 C 1.50537 * 129.25193 * 359.73364 * 6 2 1 8 8 C 1.53444 * 108.32299 * 196.53688 * 7 6 2 9 9 C 1.53109 * 109.55227 * 310.28518 * 8 7 6 10 10 H 1.09007 * 109.44948 * 310.03044 * 9 8 7 11 11 C 1.50690 * 109.45432 * 190.10208 * 9 8 7 12 12 H 1.08006 * 119.99947 * 359.88269 * 11 9 8 13 13 C 1.37874 * 120.00139 * 179.88959 * 11 9 8 14 14 N 1.31516 * 120.00234 * 179.97438 * 13 11 9 15 15 Si 1.86798 * 120.00062 * 359.97438 * 13 11 9 16 16 H 1.48497 * 109.47620 * 89.99965 * 15 13 11 17 17 H 1.48505 * 109.47292 * 210.00335 * 15 13 11 18 18 H 1.48502 * 109.46960 * 329.99941 * 15 13 11 19 19 C 1.50596 * 129.16204 * 179.87479 * 5 4 3 20 20 H 1.08998 * 109.47270 * 89.97145 * 1 2 3 21 21 H 1.08989 * 109.47776 * 209.97941 * 1 2 3 22 22 H 1.09006 * 109.46886 * 329.98493 * 1 2 3 23 23 H 1.08999 * 109.69486 * 316.23709 * 7 6 2 24 24 H 1.08991 * 109.69766 * 76.83218 * 7 6 2 25 25 H 1.08995 * 109.45752 * 70.30571 * 8 7 6 26 26 H 1.08995 * 109.45794 * 190.25769 * 8 7 6 27 27 H 0.96997 * 120.00528 * 179.97438 * 14 13 11 28 28 H 1.09006 * 109.68912 * 316.20423 * 19 5 4 29 29 H 1.09003 * 109.69501 * 76.77756 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0443 0.0000 4 7 3.4659 0.6940 -0.0018 5 6 3.5326 -0.6334 -0.0036 6 6 2.2550 -1.0873 -0.0005 7 6 1.8719 -2.5431 0.0043 8 6 3.1011 -3.3640 0.4161 9 6 4.3081 -2.9353 -0.4225 10 1 4.0354 -2.9357 -1.4779 11 6 5.4436 -3.9001 -0.1978 12 1 5.3181 -4.7341 0.4769 13 6 6.6429 -3.7181 -0.8532 14 7 7.6341 -4.5599 -0.6567 15 14 6.8599 -2.2760 -2.0205 16 1 7.3774 -1.1044 -1.2691 17 1 7.8238 -2.6443 -3.0885 18 1 5.5508 -1.9329 -2.6321 19 6 4.7466 -1.5245 -0.0087 20 1 -0.3634 0.0005 -1.0276 21 1 -0.3634 -0.8900 0.5134 22 1 -0.3633 0.8899 0.5141 23 1 1.0643 -2.7080 0.7175 24 1 1.5486 -2.8411 -0.9930 25 1 3.3138 -3.1946 1.4716 26 1 2.9022 -4.4230 0.2515 27 1 8.4776 -4.4321 -1.1181 28 1 5.4787 -1.1438 -0.7209 29 1 5.1849 -1.5539 0.9889 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261183837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:30 Heat of formation + Delta-G solvation = 66.293095 kcal Electronic energy + Delta-G solvation = -13642.333665 eV Core-core repulsion = 11373.403948 eV Total energy + Delta-G solvation = -2268.929717 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.35393 -38.38932 -35.85047 -34.58921 -31.77811 -31.11935 -28.65264 -27.05444 -24.71588 -22.85166 -22.27868 -20.32992 -18.85421 -18.04111 -17.65962 -16.45489 -15.84922 -15.11160 -14.94712 -14.69581 -14.40959 -14.09768 -13.87491 -13.56785 -13.08155 -12.77132 -12.65012 -12.21881 -12.10755 -11.84466 -11.49911 -11.15453 -11.06504 -10.81880 -10.68670 -9.77792 -8.29862 -6.31702 0.59574 1.30502 1.35204 1.40737 1.50259 1.54628 2.30715 3.03508 3.32129 3.71360 3.91201 3.97733 4.17025 4.33955 4.42195 4.57345 4.64170 4.68245 4.78006 4.78228 4.96258 5.09924 5.22140 5.27497 5.52792 5.68026 5.69736 5.77199 6.33541 6.76960 7.34410 7.48063 8.86644 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.048852 B = 0.010957 C = 0.009506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.023451 B = 2554.747848 C = 2944.940937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.277 5.277 3 N -0.128 5.128 4 N -0.312 5.312 5 C -0.042 4.042 6 C -0.005 4.005 7 C -0.034 4.034 8 C -0.093 4.093 9 C 0.016 3.984 10 H 0.028 0.972 11 C -0.509 4.509 12 H 0.051 0.949 13 C 0.024 3.976 14 N -0.943 5.943 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.294 1.294 18 H -0.256 1.256 19 C -0.036 4.036 20 H 0.110 0.890 21 H 0.130 0.870 22 H 0.113 0.887 23 H 0.119 0.881 24 H 0.102 0.898 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.265 0.735 28 H 0.042 0.958 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.884 5.359 0.555 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.070 5.070 3 N -0.106 5.106 4 N -0.176 5.176 5 C -0.182 4.182 6 C -0.140 4.140 7 C -0.073 4.073 8 C -0.131 4.131 9 C -0.004 4.004 10 H 0.046 0.954 11 C -0.547 4.547 12 H 0.069 0.931 13 C -0.174 4.174 14 N -0.584 5.584 15 Si 0.759 3.241 16 H -0.204 1.204 17 H -0.221 1.221 18 H -0.180 1.180 19 C -0.075 4.075 20 H 0.128 0.872 21 H 0.148 0.852 22 H 0.131 0.869 23 H 0.137 0.863 24 H 0.120 0.880 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.744 6.930 0.513 19.057 hybrid contribution 0.945 -0.315 -0.523 1.125 sum -16.799 6.616 -0.010 18.055 Atomic orbital electron populations 1.22800 0.69404 1.08008 1.06896 1.47256 1.10791 1.03530 1.45463 1.78339 0.96057 1.12775 1.23390 1.74694 1.10932 1.13576 1.18360 1.22098 0.97101 0.90813 1.08228 1.22293 0.90146 0.93906 1.07647 1.20405 0.99367 0.82894 1.04607 1.21448 0.92537 0.99832 0.99326 1.19218 0.94831 0.89902 0.96417 0.95354 1.21335 0.96839 1.10826 1.25688 0.93103 1.25659 0.95917 0.97950 0.97842 1.70000 1.04629 1.38893 1.44876 0.86132 0.78380 0.80158 0.79450 1.20415 1.22133 1.18009 1.20440 0.91646 0.94294 1.01115 0.87172 0.85170 0.86864 0.86322 0.87964 0.92482 0.89858 0.92532 0.93992 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 11.27 127.77 1.44 2.27 15 2 N -0.28 -7.65 3.73 -356.42 -1.33 -8.97 15 3 N -0.13 -4.65 13.19 37.02 0.49 -4.16 15 4 N -0.31 -13.46 12.40 -48.99 -0.61 -14.07 15 5 C -0.04 -1.73 7.11 41.75 0.30 -1.43 15 6 C -0.01 -0.16 6.76 41.50 0.28 0.12 15 7 C -0.03 -0.82 5.97 29.95 0.18 -0.64 15 8 C -0.09 -3.12 5.15 30.78 0.16 -2.96 15 9 C 0.02 0.70 1.66 -11.37 -0.02 0.68 15 10 H 0.03 1.28 7.17 -2.38 -0.02 1.27 15 11 C -0.51 -27.82 9.10 25.60 0.23 -27.59 15 12 H 0.05 2.99 7.99 -2.91 -0.02 2.97 15 13 C 0.02 1.40 5.45 84.65 0.46 1.86 15 14 N -0.94 -58.34 13.96 21.45 0.30 -58.04 15 15 Si 0.93 46.59 24.28 68.60 1.67 48.25 15 16 H -0.28 -13.91 6.96 99.48 0.69 -13.22 15 17 H -0.29 -14.49 7.11 99.48 0.71 -13.78 15 18 H -0.26 -12.24 6.51 99.48 0.65 -11.59 15 19 C -0.04 -1.63 4.88 29.96 0.15 -1.48 15 20 H 0.11 0.95 8.14 -2.39 -0.02 0.93 15 21 H 0.13 0.76 7.71 -2.39 -0.02 0.75 15 22 H 0.11 1.09 8.14 -2.38 -0.02 1.07 15 23 H 0.12 1.82 7.87 -2.39 -0.02 1.80 15 24 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 25 H 0.06 1.94 8.12 -2.39 -0.02 1.92 15 26 H 0.08 2.62 8.11 -2.39 -0.02 2.60 15 27 H 0.27 15.52 8.31 -92.71 -0.77 14.75 15 28 H 0.04 2.06 3.67 -2.38 -0.01 2.05 15 29 H 0.07 3.24 8.12 -2.39 -0.02 3.22 15 Total: -1.00 -74.11 236.97 4.77 -69.35 By element: Atomic # 1 Polarization: -4.25 SS G_CDS: 1.07 Total: -3.17 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 3.18 Total: -29.18 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -1.15 Total: -85.25 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.67 Total: 48.25 kcal Total: -74.11 4.77 -69.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261183837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.639 kcal (2) G-P(sol) polarization free energy of solvation -74.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds