Wall clock time and date at job start Mon Mar 30 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29075 * 124.57423 * 2 1 4 4 C 1.30240 * 108.40735 * 179.97438 * 3 2 1 5 5 C 1.40033 * 106.16742 * 0.11921 * 4 3 2 6 6 N 1.29070 * 124.57835 * 180.02562 * 2 1 3 7 7 C 1.50535 * 123.74153 * 179.60125 * 5 4 3 8 8 C 1.53428 * 108.16718 * 343.74271 * 7 5 4 9 9 H 1.09004 * 109.31538 * 290.16878 * 8 7 5 10 10 C 1.50704 * 109.43029 * 170.36008 * 8 7 5 11 11 H 1.08001 * 119.99816 * 239.61687 * 10 8 7 12 12 C 1.37877 * 120.00065 * 59.61577 * 10 8 7 13 13 N 1.31512 * 119.99880 * 0.02562 * 12 10 8 14 14 Si 1.86792 * 120.00010 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47324 * 90.00040 * 14 12 10 16 16 H 1.48504 * 109.47126 * 210.00069 * 14 12 10 17 17 H 1.48504 * 109.47379 * 329.99789 * 14 12 10 18 18 C 1.53034 * 109.83353 * 50.23150 * 8 7 5 19 19 C 1.50536 * 130.08774 * 180.32466 * 4 3 2 20 20 H 1.08999 * 109.47047 * 270.00072 * 1 2 3 21 21 H 1.08997 * 109.47075 * 30.00260 * 1 2 3 22 22 H 1.09004 * 109.46657 * 150.00136 * 1 2 3 23 23 H 1.08999 * 109.72773 * 103.37504 * 7 5 4 24 24 H 1.08997 * 109.72332 * 224.04826 * 7 5 4 25 25 H 0.97000 * 120.00367 * 179.97438 * 13 12 10 26 26 H 1.08995 * 109.41790 * 168.57154 * 18 8 7 27 27 H 1.09004 * 109.36133 * 48.72912 * 18 8 7 28 28 H 1.09001 * 109.72498 * 283.06804 * 19 4 3 29 29 H 1.09000 * 109.72729 * 43.73766 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1975 1.0628 0.0000 4 6 3.4484 0.7002 0.0006 5 6 3.4484 -0.7002 -0.0019 6 7 2.1975 -1.0627 -0.0005 7 6 4.7001 -1.5363 -0.0109 8 6 5.8728 -0.6375 -0.4245 9 1 5.7712 -0.3739 -1.4773 10 6 7.1692 -1.3772 -0.2161 11 1 7.9175 -0.9777 0.4524 12 6 7.3999 -2.5640 -0.8789 13 7 6.4889 -3.0503 -1.6933 14 14 9.0064 -3.4812 -0.6201 15 1 8.8578 -4.4301 0.5124 16 1 9.3516 -4.2328 -1.8535 17 1 10.0872 -2.5100 -0.3136 18 6 5.8731 0.6377 0.4215 19 6 4.7001 1.5364 0.0073 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 4.8803 -1.9397 0.9855 24 1 4.5921 -2.3526 -0.7250 25 1 6.6513 -3.8850 -2.1599 26 1 6.8105 1.1728 0.2701 27 1 5.7728 0.3731 1.4742 28 1 4.8791 1.9388 -0.9897 29 1 4.5928 2.3535 0.7207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261200065.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:18 Heat of formation + Delta-G solvation = 92.586149 kcal Electronic energy + Delta-G solvation = -13467.179809 eV Core-core repulsion = 11199.390244 eV Total energy + Delta-G solvation = -2267.789564 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.92431 -36.53707 -33.13995 -32.39096 -31.61836 -28.80741 -27.49732 -24.77473 -22.68395 -21.38915 -20.25295 -18.65345 -16.51620 -16.32605 -16.02704 -14.58346 -14.27951 -13.53081 -13.14650 -12.83359 -12.68676 -12.26497 -12.04291 -11.65683 -11.05818 -10.86703 -10.78349 -10.52532 -10.32727 -10.18759 -9.67324 -9.35269 -9.03490 -8.88379 -8.41745 -8.07095 -5.99511 -4.05874 2.42580 2.87150 3.21117 3.32658 3.39689 3.42317 4.44260 4.56735 5.17220 5.24244 5.33709 5.38895 5.57808 5.89343 5.94409 6.12691 6.31218 6.63012 6.71511 6.79154 6.89287 7.04034 7.14162 7.35643 7.41427 7.72448 7.91533 8.06808 8.41167 8.97754 9.02643 9.59612 11.07281 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.056953 B = 0.008817 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.513233 B = 3174.823623 C = 3549.225028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.198 5.198 3 N -0.299 5.299 4 C 0.004 3.996 5 C 0.035 3.965 6 N -0.301 5.301 7 C -0.025 4.025 8 C 0.051 3.949 9 H 0.031 0.969 10 C -0.514 4.514 11 H 0.059 0.941 12 C 0.062 3.938 13 N -0.889 5.889 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.109 4.109 19 C -0.027 4.027 20 H 0.077 0.923 21 H 0.092 0.908 22 H 0.094 0.906 23 H 0.062 0.938 24 H 0.105 0.895 25 H 0.261 0.739 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 5.507 2.840 9.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.096 5.096 3 N -0.139 5.139 4 C -0.162 4.162 5 C -0.131 4.131 6 N -0.140 5.140 7 C -0.065 4.065 8 C 0.032 3.968 9 H 0.049 0.951 10 C -0.553 4.553 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.147 4.147 19 C -0.067 4.067 20 H 0.096 0.904 21 H 0.111 0.889 22 H 0.113 0.887 23 H 0.081 0.919 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.046 5.349 2.715 10.854 hybrid contribution 1.414 -0.620 0.079 1.546 sum -7.632 4.730 2.794 9.403 Atomic orbital electron populations 1.21809 0.71708 1.04824 1.03748 1.47996 1.07997 0.99411 1.54204 1.73499 1.03967 1.15841 1.20580 1.23063 0.92451 0.95074 1.05610 1.23987 0.93330 0.94625 1.01175 1.73710 1.04282 1.14946 1.21077 1.20415 0.85558 0.98352 1.02171 1.18731 0.92942 0.89923 0.95194 0.95084 1.21163 1.01220 1.06418 1.26464 0.92236 1.25000 0.96627 0.97414 0.94891 1.69886 1.33819 1.20647 1.28434 0.86596 0.83967 0.79906 0.77538 1.20699 1.21322 1.19889 1.21737 0.95196 0.97490 1.00271 1.20039 0.88724 0.96140 1.01770 0.90420 0.88892 0.88706 0.91923 0.87657 0.92876 0.91769 0.92948 0.90590 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.42 11.57 59.85 0.69 2.11 15 2 N -0.20 -3.70 4.37 -16.72 -0.07 -3.77 15 3 N -0.30 -5.95 12.04 33.56 0.40 -5.55 15 4 C 0.00 0.08 7.20 -82.71 -0.60 -0.51 15 5 C 0.03 0.79 7.20 -82.72 -0.60 0.19 15 6 N -0.30 -6.53 12.04 33.56 0.40 -6.12 15 7 C -0.03 -0.61 5.19 -27.74 -0.14 -0.76 15 8 C 0.05 1.25 2.05 -91.53 -0.19 1.06 15 9 H 0.03 0.83 8.11 -51.93 -0.42 0.41 15 10 C -0.51 -13.62 8.52 -34.44 -0.29 -13.91 15 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 12 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 13 N -0.89 -25.05 11.43 55.43 0.63 -24.41 15 14 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 15 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 18 C -0.11 -2.20 5.12 -26.47 -0.14 -2.33 15 19 C -0.03 -0.50 6.31 -27.72 -0.17 -0.68 15 20 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.09 0.97 8.14 -51.93 -0.42 0.54 15 23 H 0.06 1.52 8.12 -51.93 -0.42 1.10 15 24 H 0.11 2.84 6.41 -51.93 -0.33 2.51 15 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 26 H 0.06 1.22 8.09 -51.93 -0.42 0.80 15 27 H 0.05 1.04 8.11 -51.93 -0.42 0.62 15 28 H 0.08 1.33 8.14 -51.93 -0.42 0.90 15 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 LS Contribution 244.79 15.07 3.69 3.69 Total: -1.00 -30.59 244.79 -5.16 -35.76 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -3.67 Total: -2.14 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -1.53 Total: -13.24 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 1.37 Total: -39.86 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.59 -5.16 -35.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200065.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.343 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds