Wall clock time and date at job start Mon Mar 30 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29075 * 124.57423 * 2 1 4 4 C 1.30240 * 108.40735 * 179.97438 * 3 2 1 5 5 C 1.40033 * 106.16742 * 0.11921 * 4 3 2 6 6 N 1.29070 * 124.57835 * 180.02562 * 2 1 3 7 7 C 1.50535 * 123.74153 * 179.60125 * 5 4 3 8 8 C 1.53428 * 108.16718 * 343.74271 * 7 5 4 9 9 H 1.09004 * 109.31538 * 290.16878 * 8 7 5 10 10 C 1.50704 * 109.43029 * 170.36008 * 8 7 5 11 11 H 1.08001 * 119.99816 * 239.61687 * 10 8 7 12 12 C 1.37877 * 120.00065 * 59.61577 * 10 8 7 13 13 N 1.31512 * 119.99880 * 0.02562 * 12 10 8 14 14 Si 1.86792 * 120.00010 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47324 * 90.00040 * 14 12 10 16 16 H 1.48504 * 109.47126 * 210.00069 * 14 12 10 17 17 H 1.48504 * 109.47379 * 329.99789 * 14 12 10 18 18 C 1.53034 * 109.83353 * 50.23150 * 8 7 5 19 19 C 1.50536 * 130.08774 * 180.32466 * 4 3 2 20 20 H 1.08999 * 109.47047 * 270.00072 * 1 2 3 21 21 H 1.08997 * 109.47075 * 30.00260 * 1 2 3 22 22 H 1.09004 * 109.46657 * 150.00136 * 1 2 3 23 23 H 1.08999 * 109.72773 * 103.37504 * 7 5 4 24 24 H 1.08997 * 109.72332 * 224.04826 * 7 5 4 25 25 H 0.97000 * 120.00367 * 179.97438 * 13 12 10 26 26 H 1.08995 * 109.41790 * 168.57154 * 18 8 7 27 27 H 1.09004 * 109.36133 * 48.72912 * 18 8 7 28 28 H 1.09001 * 109.72498 * 283.06804 * 19 4 3 29 29 H 1.09000 * 109.72729 * 43.73766 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1975 1.0628 0.0000 4 6 3.4484 0.7002 0.0006 5 6 3.4484 -0.7002 -0.0019 6 7 2.1975 -1.0627 -0.0005 7 6 4.7001 -1.5363 -0.0109 8 6 5.8728 -0.6375 -0.4245 9 1 5.7712 -0.3739 -1.4773 10 6 7.1692 -1.3772 -0.2161 11 1 7.9175 -0.9777 0.4524 12 6 7.3999 -2.5640 -0.8789 13 7 6.4889 -3.0503 -1.6933 14 14 9.0064 -3.4812 -0.6201 15 1 8.8578 -4.4301 0.5124 16 1 9.3516 -4.2328 -1.8535 17 1 10.0872 -2.5100 -0.3136 18 6 5.8731 0.6377 0.4215 19 6 4.7001 1.5364 0.0073 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 4.8803 -1.9397 0.9855 24 1 4.5921 -2.3526 -0.7250 25 1 6.6513 -3.8850 -2.1599 26 1 6.8105 1.1728 0.2701 27 1 5.7728 0.3731 1.4742 28 1 4.8791 1.9388 -0.9897 29 1 4.5928 2.3535 0.7207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261200065.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:17 Heat of formation + Delta-G solvation = 72.650205 kcal Electronic energy + Delta-G solvation = -13468.044296 eV Core-core repulsion = 11199.390244 eV Total energy + Delta-G solvation = -2268.654052 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.49695 -38.25834 -34.90161 -33.96274 -33.27084 -30.54848 -29.03015 -26.58293 -24.25715 -23.11723 -21.85727 -20.38985 -18.36560 -17.77266 -17.67498 -16.52161 -15.83459 -15.23213 -14.59659 -14.38255 -13.97030 -13.84436 -13.58251 -13.36625 -12.84539 -12.54842 -12.52518 -12.34869 -12.13949 -11.81451 -11.46210 -11.05181 -10.84400 -10.81123 -10.42528 -9.66591 -8.04808 -6.18440 0.86175 1.47251 1.48802 1.52277 1.58551 1.61656 2.48930 3.07567 3.27983 3.97502 4.21634 4.31623 4.32179 4.40049 4.50469 4.58750 4.80031 4.93991 4.96322 5.13211 5.18299 5.33837 5.44734 5.57588 5.68540 5.91120 5.96764 6.07426 6.39200 6.93839 7.42109 7.50842 9.00993 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.056953 B = 0.008817 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.513233 B = 3174.823623 C = 3549.225028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.185 5.185 3 N -0.295 5.295 4 C -0.008 4.008 5 C 0.000 4.000 6 N -0.314 5.314 7 C -0.011 4.011 8 C 0.049 3.951 9 H 0.000 1.000 10 C -0.529 4.529 11 H 0.064 0.936 12 C 0.012 3.988 13 N -0.921 5.921 14 Si 0.955 3.045 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.264 1.264 18 C -0.100 4.100 19 C -0.021 4.021 20 H 0.103 0.897 21 H 0.119 0.881 22 H 0.110 0.890 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.260 0.740 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.009 6.710 3.603 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.086 5.086 3 N -0.136 5.136 4 C -0.172 4.172 5 C -0.164 4.164 6 N -0.154 5.154 7 C -0.051 4.051 8 C 0.030 3.970 9 H 0.018 0.982 10 C -0.567 4.567 11 H 0.083 0.917 12 C -0.186 4.186 13 N -0.560 5.560 14 Si 0.781 3.219 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.188 1.188 18 C -0.138 4.138 19 C -0.060 4.060 20 H 0.122 0.878 21 H 0.138 0.862 22 H 0.129 0.871 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.506 6.568 3.488 12.070 hybrid contribution 1.394 -0.992 -0.167 1.719 sum -8.112 5.576 3.321 10.389 Atomic orbital electron populations 1.22450 0.67996 1.07019 1.06192 1.48699 1.09905 0.98383 1.51572 1.73491 1.03553 1.16020 1.20532 1.23361 0.93640 0.94388 1.05802 1.23701 0.93234 0.95549 1.03894 1.73624 1.04335 1.16356 1.21118 1.20002 0.87108 0.97645 1.00357 1.18681 0.92242 0.91870 0.94192 0.98199 1.21566 1.02190 1.06731 1.26211 0.91733 1.25785 0.99714 0.98397 0.94723 1.70044 1.35610 1.20959 1.29432 0.85595 0.80337 0.78697 0.77257 1.20341 1.21419 1.18803 1.21599 0.96930 0.95873 0.99395 1.20069 0.86717 0.96107 1.03149 0.87812 0.86234 0.87117 0.93009 0.91154 0.93097 0.90410 0.92715 0.89743 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.07 11.57 127.77 1.48 3.55 15 2 N -0.18 -6.54 4.37 -206.80 -0.90 -7.45 15 3 N -0.29 -11.11 12.04 -47.74 -0.57 -11.68 15 4 C -0.01 -0.31 7.20 43.19 0.31 0.00 15 5 C 0.00 0.02 7.20 43.19 0.31 0.33 15 6 N -0.31 -13.43 12.04 -47.75 -0.57 -14.00 15 7 C -0.01 -0.56 5.19 29.94 0.16 -0.41 15 8 C 0.05 2.45 2.05 -11.38 -0.02 2.43 15 9 H 0.00 -0.01 8.11 -2.38 -0.02 -0.03 15 10 C -0.53 -28.28 8.52 25.60 0.22 -28.07 15 11 H 0.06 3.30 7.74 -2.91 -0.02 3.28 15 12 C 0.01 0.68 5.30 84.66 0.45 1.13 15 13 N -0.92 -53.44 11.43 21.45 0.25 -53.19 15 14 Si 0.96 42.96 29.54 68.60 2.03 44.99 15 15 H -0.28 -12.25 7.11 99.48 0.71 -11.55 15 16 H -0.29 -12.91 7.11 99.48 0.71 -12.20 15 17 H -0.26 -11.33 7.11 99.48 0.71 -10.63 15 18 C -0.10 -3.93 5.12 30.76 0.16 -3.78 15 19 C -0.02 -0.74 6.31 29.95 0.19 -0.55 15 20 H 0.10 1.65 8.14 -2.39 -0.02 1.63 15 21 H 0.12 1.85 8.14 -2.39 -0.02 1.83 15 22 H 0.11 1.94 8.14 -2.39 -0.02 1.92 15 23 H 0.05 2.62 8.12 -2.39 -0.02 2.60 15 24 H 0.07 4.00 6.41 -2.39 -0.02 3.98 15 25 H 0.26 14.43 8.31 -92.71 -0.77 13.66 15 26 H 0.08 2.82 8.09 -2.39 -0.02 2.80 15 27 H 0.05 2.11 8.11 -2.39 -0.02 2.09 15 28 H 0.08 2.79 8.14 -2.39 -0.02 2.77 15 29 H 0.10 2.84 8.14 -2.39 -0.02 2.82 15 Total: -1.00 -66.31 244.79 4.60 -61.71 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.14 Total: 4.99 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 3.25 Total: -25.36 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -1.81 Total: -86.32 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -66.31 4.60 -61.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200065.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.360 kcal (2) G-P(sol) polarization free energy of solvation -66.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds