Wall clock time and date at job start Mon Mar 30 2020 02:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47088 * 111.00181 * 2 1 4 4 C 1.53219 * 109.55919 * 286.84501 * 3 2 1 5 5 C 1.53557 * 108.85361 * 292.65425 * 4 3 2 6 6 N 1.46883 * 107.74441 * 46.39143 * 5 4 3 7 7 N 1.39454 * 127.36304 * 164.86772 * 6 5 4 8 8 C 1.30436 * 109.45467 * 179.97438 * 7 6 5 9 9 C 1.41965 * 108.29160 * 0.27418 * 8 7 6 10 10 C 1.41190 * 126.67642 * 179.73010 * 9 8 7 11 11 H 1.07996 * 120.00317 * 180.02562 * 10 9 8 12 12 C 1.39556 * 119.99697 * 0.02562 * 10 9 8 13 13 N 1.31197 * 120.00620 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99908 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46866 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46925 * 120.00103 * 14 12 10 17 17 H 1.48493 * 109.47400 * 240.00219 * 14 12 10 18 18 C 1.35420 * 124.01071 * 344.84026 * 6 5 4 19 19 H 1.08998 * 109.46744 * 63.96000 * 1 2 3 20 20 H 1.09004 * 109.47129 * 183.95218 * 1 2 3 21 21 H 1.08998 * 109.47778 * 303.96176 * 1 2 3 22 22 H 1.08995 * 109.45746 * 166.81465 * 3 2 1 23 23 H 1.08997 * 109.43835 * 46.85917 * 3 2 1 24 24 H 1.09004 * 109.57289 * 172.84490 * 4 3 2 25 25 H 1.09002 * 109.67834 * 52.53004 * 4 3 2 26 26 H 1.08992 * 109.80305 * 286.82884 * 5 4 3 27 27 H 1.09001 * 109.85489 * 165.97908 * 5 4 3 28 28 H 1.08002 * 125.85085 * 179.97438 * 8 7 6 29 29 H 0.96993 * 120.00756 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9961 1.3732 0.0000 4 6 1.7894 2.0020 -1.3818 5 6 2.6810 1.2727 -2.3973 6 7 2.5208 -0.1708 -2.1782 7 7 2.8992 -1.2040 -3.0350 8 6 2.5940 -2.3509 -2.4938 9 6 1.9848 -2.1020 -1.2359 10 6 1.4997 -3.0683 -0.3279 11 1 1.0526 -2.7567 0.6045 12 6 1.5980 -4.4260 -0.6353 13 7 2.1415 -4.8046 -1.7678 14 14 0.9555 -5.7045 0.5657 15 1 0.3929 -5.0235 1.7595 16 1 -0.1056 -6.5104 -0.0899 17 1 2.0679 -6.5957 0.9820 18 6 1.9621 -0.7112 -1.0693 19 1 -0.3633 0.4511 -0.9233 20 1 -0.3633 -1.0253 0.0708 21 1 -0.3634 0.5741 0.8523 22 1 3.0604 1.3535 0.2344 23 1 1.4700 1.9637 0.7500 24 1 2.0623 3.0568 -1.3476 25 1 0.7446 1.9045 -1.6769 26 1 3.7223 1.5561 -2.2449 27 1 2.3732 1.5287 -3.4112 28 1 2.7699 -3.3230 -2.9303 29 1 2.2101 -5.7483 -1.9813 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261211699.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:28 Heat of formation + Delta-G solvation = 83.241031 kcal Electronic energy + Delta-G solvation = -13811.574040 eV Core-core repulsion = 11543.379241 eV Total energy + Delta-G solvation = -2268.194799 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.01817 -36.62426 -33.81323 -32.54320 -29.16439 -28.41124 -26.59409 -24.42912 -23.44021 -21.43557 -19.61146 -17.92289 -17.07678 -15.41412 -14.85851 -14.72457 -14.26323 -13.78315 -13.47640 -13.34934 -12.72913 -11.82668 -11.76432 -11.40507 -11.24905 -11.11074 -10.91797 -10.83851 -10.61936 -10.31962 -9.96767 -9.18764 -8.92795 -8.32311 -7.41147 -6.85068 -6.38064 -3.86282 3.03949 3.25014 3.30912 3.39237 3.81940 4.19375 4.42355 4.72509 4.97507 5.12087 5.43092 5.61491 5.65999 5.84271 5.89465 5.93512 6.00358 6.08037 6.36817 6.57299 6.86668 7.12041 7.29935 7.57670 7.79099 7.91417 8.21125 8.73733 8.80877 9.16695 9.26100 9.56427 10.61441 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.045028 B = 0.011528 C = 0.009548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.686691 B = 2428.372157 C = 2931.963901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.433 5.433 3 C 0.051 3.949 4 C -0.168 4.168 5 C 0.149 3.851 6 N -0.413 5.413 7 N -0.334 5.334 8 C 0.032 3.968 9 C 0.000 4.000 10 C -0.417 4.417 11 H 0.074 0.926 12 C 0.062 3.938 13 N -0.844 5.844 14 Si 0.915 3.085 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.065 3.935 19 H 0.017 0.983 20 H 0.080 0.920 21 H 0.056 0.944 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.205 0.795 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 8.174 2.193 8.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.153 5.153 3 C -0.077 4.077 4 C -0.208 4.208 5 C 0.026 3.974 6 N -0.207 5.207 7 N -0.157 5.157 8 C -0.155 4.155 9 C -0.011 4.011 10 C -0.451 4.451 11 H 0.092 0.908 12 C -0.148 4.148 13 N -0.476 5.476 14 Si 0.741 3.259 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.204 1.204 18 C -0.148 4.148 19 H 0.035 0.965 20 H 0.099 0.901 21 H 0.075 0.925 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.221 0.779 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.381 8.408 1.548 8.660 hybrid contribution -0.881 -0.477 0.476 1.109 sum -2.263 7.931 2.024 8.492 Atomic orbital electron populations 1.22539 0.87930 1.03113 0.98557 1.59167 1.06990 1.10785 1.38320 1.22209 1.01336 0.89239 0.94944 1.22509 1.00602 1.00020 0.97688 1.21307 0.99082 0.78086 0.98930 1.48015 1.54003 1.03786 1.14889 1.76447 1.26413 0.95666 1.17171 1.25057 0.99282 0.95809 0.95355 1.17581 1.00480 0.87855 0.95222 1.18685 1.33966 0.89329 1.03151 0.90822 1.25677 0.94229 0.99385 0.95484 1.69528 1.38743 1.17110 1.22208 0.86150 0.78733 0.80205 0.80795 1.18960 1.20526 1.20438 1.19093 1.15228 0.92524 0.87944 0.96469 0.90121 0.92486 0.90630 0.90669 0.90113 0.91263 0.92069 0.91229 0.77935 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.26 60.06 0.56 1.04 15 2 N -0.43 -9.17 5.04 -180.04 -0.91 -10.08 15 3 C 0.05 0.85 5.78 -3.61 -0.02 0.83 15 4 C -0.17 -2.52 6.01 -26.33 -0.16 -2.68 15 5 C 0.15 2.69 7.40 -3.54 -0.03 2.66 15 6 N -0.41 -9.88 4.04 -59.24 -0.24 -10.12 15 7 N -0.33 -8.85 12.50 31.01 0.39 -8.46 15 8 C 0.03 0.88 10.91 -16.72 -0.18 0.70 15 9 C 0.00 0.00 5.94 -106.65 -0.63 -0.64 15 10 C -0.42 -11.51 8.97 -37.97 -0.34 -11.85 15 11 H 0.07 2.00 7.52 -52.49 -0.39 1.60 15 12 C 0.06 1.63 5.49 -17.33 -0.10 1.53 15 13 N -0.84 -22.55 10.33 55.53 0.57 -21.98 15 14 Si 0.91 19.92 29.56 -169.99 -5.02 14.90 15 15 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 18 C 0.07 1.63 5.95 -153.39 -0.91 0.72 15 19 H 0.02 0.31 6.79 -51.93 -0.35 -0.04 15 20 H 0.08 1.66 7.40 -51.93 -0.38 1.28 15 21 H 0.06 0.87 8.03 -51.93 -0.42 0.46 15 22 H 0.08 1.28 8.13 -51.93 -0.42 0.86 15 23 H 0.07 1.03 7.96 -51.93 -0.41 0.62 15 24 H 0.08 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.07 1.08 6.68 -51.93 -0.35 0.73 15 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 28 H 0.20 5.70 5.76 -52.49 -0.30 5.40 15 29 H 0.27 6.69 8.30 -40.82 -0.34 6.35 15 LS Contribution 239.49 15.07 3.61 3.61 Total: -1.00 -30.38 239.49 -6.85 -37.23 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -3.44 Total: 2.58 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.81 Total: -7.67 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.19 Total: -50.64 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.38 -6.85 -37.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211699.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.475 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds