Wall clock time and date at job start Mon Mar 30 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99900 * 2 1 4 4 H 1.48498 * 109.46951 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47350 * 300.00272 * 3 2 1 6 6 H 1.48499 * 109.46983 * 60.00726 * 3 2 1 7 7 C 1.37882 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99857 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99944 * 359.97438 * 7 2 1 10 10 F 1.39898 * 109.47517 * 59.99715 * 9 7 2 11 11 F 1.39901 * 109.46958 * 299.99495 * 9 7 2 12 12 C 1.53002 * 109.46930 * 180.02562 * 9 7 2 13 13 H 1.08998 * 109.96705 * 54.79281 * 12 9 7 14 14 C 1.54015 * 110.00859 * 175.95406 * 12 9 7 15 15 C 1.54276 * 108.84323 * 166.53228 * 14 12 9 16 16 S 1.83098 * 104.75016 * 332.19840 * 15 14 12 17 17 C 1.55132 * 109.97455 * 293.54341 * 12 9 7 18 18 H 0.96996 * 119.99874 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.57728 * 46.68628 * 14 12 9 20 20 H 1.09009 * 109.72911 * 286.47320 * 14 12 9 21 21 H 1.09002 * 110.40402 * 213.34657 * 15 14 12 22 22 H 1.08998 * 110.39950 * 91.04553 * 15 14 12 23 23 H 1.09004 * 110.85654 * 80.30485 * 17 12 9 24 24 H 1.09008 * 110.86096 * 316.66314 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 9 0.4462 -2.5731 -1.1424 11 9 0.4472 -2.5735 1.1421 12 6 2.2453 -3.6621 -0.0005 13 1 2.9361 -3.5611 0.8365 14 6 1.4905 -5.0007 0.1016 15 6 2.4635 -6.1486 -0.2389 16 16 3.6952 -5.3968 -1.3659 17 6 3.0323 -3.6864 -1.3372 18 1 -0.4850 0.8400 0.0004 19 1 0.6585 -5.0055 -0.6026 20 1 1.1098 -5.1322 1.1145 21 1 1.9345 -6.9590 -0.7403 22 1 2.9497 -6.5152 0.6651 23 1 3.8419 -2.9565 -1.3242 24 1 2.3665 -3.5140 -2.1829 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259965.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:55 Heat of formation + Delta-G solvation = -138.312722 kcal Electronic energy + Delta-G solvation = -12346.609436 eV Core-core repulsion = 9827.319274 eV Total energy + Delta-G solvation = -2519.290163 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 208.043 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.02102 -47.04416 -37.30879 -34.86521 -31.38340 -28.61721 -26.39077 -23.81392 -21.15901 -19.31564 -18.02002 -17.52434 -17.11744 -16.58925 -15.79469 -15.75071 -14.84542 -14.06609 -13.98807 -13.83892 -13.48711 -13.47932 -13.16800 -12.89366 -12.86944 -12.40933 -12.24983 -12.05507 -11.81904 -11.22698 -10.94170 -10.62349 -8.71545 -8.38052 -6.72995 0.85142 1.35292 1.39800 1.40188 1.54165 2.28779 2.93987 3.40112 3.55978 3.67935 3.99749 4.12915 4.17979 4.53778 4.70102 4.70715 4.80347 4.91338 5.02981 5.41182 5.46607 5.54472 6.41938 7.13512 8.68109 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.050067 B = 0.011452 C = 0.010152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.113716 B = 2444.369425 C = 2757.431043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.029 3.971 3 Si 0.980 3.020 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.610 4.610 8 H 0.091 0.909 9 C 0.393 3.607 10 F -0.237 7.237 11 F -0.239 7.239 12 C -0.117 4.117 13 H 0.103 0.897 14 C -0.128 4.128 15 C -0.052 4.052 16 S -0.322 6.322 17 C -0.038 4.038 18 H 0.272 0.728 19 H 0.065 0.935 20 H 0.094 0.906 21 H 0.114 0.886 22 H 0.113 0.887 23 H 0.107 0.893 24 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -7.332 0.015 8.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.803 3.197 4 H -0.176 1.176 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.647 4.647 8 H 0.109 0.891 9 C 0.356 3.644 10 F -0.219 7.219 11 F -0.221 7.221 12 C -0.138 4.138 13 H 0.121 0.879 14 C -0.166 4.166 15 C -0.199 4.199 16 S -0.096 6.096 17 C -0.186 4.186 18 H 0.081 0.919 19 H 0.084 0.916 20 H 0.112 0.888 21 H 0.133 0.867 22 H 0.132 0.868 23 H 0.126 0.874 24 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.869 -7.750 -0.567 9.738 hybrid contribution -1.197 1.467 0.554 1.973 sum 4.671 -6.283 -0.014 7.829 Atomic orbital electron populations 1.70166 1.08151 1.28877 1.46051 1.26133 0.95727 1.04221 0.91538 0.85179 0.79311 0.77231 0.78013 1.17641 1.20042 1.20023 1.22049 0.94830 0.90102 1.57691 0.89055 1.18707 0.80419 0.95711 0.69600 1.92808 1.77878 1.97513 1.53675 1.92820 1.77960 1.97568 1.53720 1.23072 0.97292 0.94305 0.99104 0.87854 1.22347 0.98567 0.91650 1.04040 1.23996 0.95969 0.99252 1.00731 1.87254 1.45321 1.11124 1.65919 1.24010 1.01781 0.93877 0.98928 0.91893 0.91634 0.88781 0.86731 0.86831 0.87425 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.88 12.62 21.45 0.27 -52.61 14 2 C 0.03 1.57 5.39 84.66 0.46 2.03 14 3 Si 0.98 41.84 29.54 68.60 2.03 43.87 14 4 H -0.25 -10.10 7.11 99.48 0.71 -9.40 14 5 H -0.28 -11.50 7.11 99.48 0.71 -10.79 14 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 14 7 C -0.61 -32.53 8.15 25.60 0.21 -32.32 14 8 H 0.09 4.53 7.46 -2.91 -0.02 4.50 14 9 C 0.39 19.95 1.14 29.85 0.03 19.99 14 10 F -0.24 -13.03 15.21 44.97 0.68 -12.35 14 11 F -0.24 -13.17 16.24 44.97 0.73 -12.44 14 12 C -0.12 -4.58 2.21 -9.72 -0.02 -4.60 14 13 H 0.10 3.91 8.14 -2.39 -0.02 3.89 14 14 C -0.13 -4.15 5.42 31.37 0.17 -3.98 14 15 C -0.05 -1.33 7.33 72.41 0.53 -0.80 14 16 S -0.32 -10.01 23.26 -56.49 -1.31 -11.32 14 17 C -0.04 -1.38 6.20 72.71 0.45 -0.93 14 18 H 0.27 14.91 8.31 -92.71 -0.77 14.14 14 19 H 0.06 2.30 7.68 -2.38 -0.02 2.28 14 20 H 0.09 2.88 8.14 -2.38 -0.02 2.87 14 21 H 0.11 2.47 8.14 -2.39 -0.02 2.45 14 22 H 0.11 2.43 8.14 -2.39 -0.02 2.41 14 23 H 0.11 3.84 7.90 -2.39 -0.02 3.82 14 24 H 0.08 3.25 7.37 -2.38 -0.02 3.23 14 Total: -1.00 -62.27 225.30 5.42 -56.85 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.20 Total: 8.63 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 1.83 Total: -20.62 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.27 Total: -52.61 kcal Atomic # 9 Polarization: -26.20 SS G_CDS: 1.41 Total: -24.78 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: -10.01 SS G_CDS: -1.31 Total: -11.32 kcal Total: -62.27 5.42 -56.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259965.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.463 kcal (2) G-P(sol) polarization free energy of solvation -62.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds