Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47443 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46910 * 300.00046 * 3 2 1 6 6 H 1.48497 * 109.47189 * 60.00081 * 3 2 1 7 7 C 1.37878 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99810 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99915 * 359.97438 * 7 2 1 10 10 F 1.39902 * 109.46718 * 60.00672 * 9 7 2 11 11 F 1.39895 * 109.47365 * 300.00570 * 9 7 2 12 12 C 1.53002 * 109.47051 * 180.02562 * 9 7 2 13 13 H 1.08997 * 109.60911 * 306.11771 * 12 9 7 14 14 C 1.53854 * 109.60806 * 185.95823 * 12 9 7 15 15 C 1.55136 * 106.90124 * 192.82769 * 14 12 9 16 16 S 1.83468 * 102.20321 * 42.11556 * 15 14 12 17 17 C 1.54272 * 109.60706 * 66.45797 * 12 9 7 18 18 H 0.96994 * 120.00017 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.97746 * 312.18863 * 14 12 9 20 20 H 1.09000 * 109.97609 * 73.46733 * 14 12 9 21 21 H 1.09006 * 110.85800 * 283.94016 * 15 14 12 22 22 H 1.08997 * 110.85873 * 160.29341 * 15 14 12 23 23 H 1.09001 * 110.40303 * 29.08079 * 17 12 9 24 24 H 1.09000 * 110.49960 * 266.71101 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 9 0.4465 -2.5730 -1.1426 11 9 0.4472 -2.5735 1.1419 12 6 2.2454 -3.6620 -0.0005 13 1 2.9431 -3.5467 -0.8300 14 6 1.4853 -4.9912 -0.1510 15 6 2.4897 -6.1254 0.1831 16 16 3.3655 -5.4492 1.6465 17 6 3.0230 -3.6783 1.3318 18 1 -0.4850 0.8400 0.0004 19 1 0.6458 -5.0208 0.5436 20 1 1.1265 -5.1012 -1.1743 21 1 3.1820 -6.2866 -0.6433 22 1 1.9648 -7.0465 0.4364 23 1 2.4129 -3.2611 2.1329 24 1 3.9555 -3.1221 1.2363 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259968.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = -138.143080 kcal Electronic energy + Delta-G solvation = -12359.819514 eV Core-core repulsion = 9840.536708 eV Total energy + Delta-G solvation = -2519.282806 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 208.043 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.02762 -47.04757 -37.33411 -34.86474 -31.36386 -28.61617 -26.39237 -23.80084 -21.15043 -19.31344 -17.97983 -17.54411 -17.19562 -16.60298 -15.80250 -15.68911 -14.88290 -14.02149 -13.93541 -13.83162 -13.47696 -13.45730 -13.18668 -12.89407 -12.86216 -12.50380 -12.25525 -12.05763 -11.81563 -11.16985 -10.94476 -10.63368 -8.70859 -8.38256 -6.73337 0.86362 1.36458 1.39358 1.40093 1.53745 2.28418 2.93830 3.37316 3.57667 3.70083 3.96376 4.15132 4.21611 4.57844 4.67297 4.71467 4.79382 4.92550 5.04491 5.41298 5.46225 5.53802 6.41551 7.13219 8.67915 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.051168 B = 0.011401 C = 0.010236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.090322 B = 2455.353406 C = 2734.658850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.028 3.972 3 Si 0.980 3.020 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.610 4.610 8 H 0.092 0.908 9 C 0.391 3.609 10 F -0.239 7.239 11 F -0.238 7.238 12 C -0.119 4.119 13 H 0.104 0.896 14 C -0.126 4.126 15 C -0.048 4.048 16 S -0.328 6.328 17 C -0.040 4.040 18 H 0.272 0.728 19 H 0.065 0.935 20 H 0.097 0.903 21 H 0.112 0.888 22 H 0.124 0.876 23 H 0.080 0.920 24 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 -7.376 -0.609 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.176 1.176 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.647 4.647 8 H 0.110 0.890 9 C 0.354 3.646 10 F -0.220 7.220 11 F -0.219 7.219 12 C -0.139 4.139 13 H 0.122 0.878 14 C -0.165 4.165 15 C -0.196 4.196 16 S -0.103 6.103 17 C -0.188 4.188 18 H 0.081 0.919 19 H 0.083 0.917 20 H 0.115 0.885 21 H 0.131 0.869 22 H 0.142 0.858 23 H 0.099 0.901 24 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.964 -7.844 0.279 9.858 hybrid contribution -0.861 1.584 -0.817 1.979 sum 5.103 -6.260 -0.537 8.095 Atomic orbital electron populations 1.70168 1.08173 1.28875 1.46063 1.26141 0.95728 1.04256 0.91546 0.85178 0.79327 0.77213 0.78002 1.17584 1.19998 1.20097 1.22066 0.94842 0.90124 1.57679 0.89013 1.18749 0.80487 0.95764 0.69580 1.92819 1.77914 1.97567 1.53714 1.92807 1.77918 1.97518 1.53692 1.22805 0.97438 0.94696 0.98974 0.87761 1.22587 0.98418 0.91532 1.03937 1.24282 0.98885 1.00258 0.96143 1.87277 1.74848 1.07696 1.40431 1.23748 1.03203 0.93031 0.98788 0.91901 0.91661 0.88475 0.86938 0.85770 0.90141 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.08 12.62 21.45 0.27 -52.81 14 2 C 0.03 1.54 5.39 84.66 0.46 2.00 14 3 Si 0.98 41.88 29.54 68.60 2.03 43.90 14 4 H -0.25 -10.06 7.11 99.48 0.71 -9.35 14 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 14 6 H -0.28 -11.55 7.11 99.48 0.71 -10.85 14 7 C -0.61 -32.57 8.13 25.60 0.21 -32.36 14 8 H 0.09 4.53 7.67 -2.91 -0.02 4.51 14 9 C 0.39 19.92 1.12 29.85 0.03 19.95 14 10 F -0.24 -13.13 16.15 44.97 0.73 -12.40 14 11 F -0.24 -13.22 15.14 44.97 0.68 -12.54 14 12 C -0.12 -4.62 2.22 -10.07 -0.02 -4.64 14 13 H 0.10 3.83 8.14 -2.39 -0.02 3.81 14 14 C -0.13 -4.11 5.39 31.61 0.17 -3.94 14 15 C -0.05 -1.22 7.38 72.71 0.54 -0.69 14 16 S -0.33 -10.35 23.26 -56.49 -1.31 -11.67 14 17 C -0.04 -1.46 6.20 72.41 0.45 -1.01 14 18 H 0.27 14.96 8.31 -92.71 -0.77 14.19 14 19 H 0.06 2.34 7.76 -2.38 -0.02 2.32 14 20 H 0.10 2.95 8.11 -2.39 -0.02 2.93 14 21 H 0.11 2.38 8.14 -2.38 -0.02 2.36 14 22 H 0.12 2.56 8.14 -2.39 -0.02 2.54 14 23 H 0.08 3.33 7.09 -2.39 -0.02 3.31 14 24 H 0.10 3.60 8.14 -2.39 -0.02 3.58 14 Total: -1.00 -63.03 225.36 5.42 -57.62 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.20 Total: 8.59 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 1.83 Total: -20.69 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.27 Total: -52.81 kcal Atomic # 9 Polarization: -26.35 SS G_CDS: 1.41 Total: -24.94 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: -10.35 SS G_CDS: -1.31 Total: -11.67 kcal Total: -63.03 5.42 -57.62 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259968.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.528 kcal (2) G-P(sol) polarization free energy of solvation -63.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds