Wall clock time and date at job start Mon Mar 30 2020 02:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48109 * 110.99852 * 2 1 4 4 C 1.54596 * 101.95413 * 264.84356 * 3 2 1 5 5 N 1.47410 * 103.11847 * 335.19103 * 4 3 2 6 6 N 1.40095 * 142.65832 * 196.01778 * 5 4 3 7 7 C 1.30780 * 108.32757 * 179.39087 * 6 5 4 8 8 C 1.50703 * 125.83444 * 180.11574 * 7 6 5 9 9 C 1.50704 * 109.46757 * 305.02512 * 8 7 6 10 10 H 1.08003 * 120.00278 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00002 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00062 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00190 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47064 * 90.00407 * 13 11 9 15 15 H 1.48494 * 109.47409 * 210.00428 * 13 11 9 16 16 H 1.48503 * 109.47407 * 330.00708 * 13 11 9 17 17 C 1.39670 * 108.33733 * 0.15111 * 7 6 5 18 18 C 1.35070 * 109.14689 * 15.76946 * 5 4 3 19 19 H 1.09001 * 109.47273 * 59.87922 * 1 2 3 20 20 H 1.09000 * 109.47022 * 179.87491 * 1 2 3 21 21 H 1.08999 * 109.47747 * 299.87461 * 1 2 3 22 22 H 1.09002 * 110.94041 * 23.01974 * 3 2 1 23 23 H 1.08997 * 110.93852 * 146.67247 * 3 2 1 24 24 H 1.09000 * 110.68027 * 93.58052 * 4 3 2 25 25 H 1.09003 * 110.68090 * 216.74964 * 4 3 2 26 26 H 1.09003 * 109.47136 * 65.02208 * 8 7 6 27 27 H 1.08993 * 109.47525 * 185.03136 * 8 7 6 28 28 H 0.96992 * 120.00188 * 179.97438 * 12 11 9 29 29 H 1.07995 * 126.04459 * 180.14840 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9997 1.3827 0.0000 4 6 2.2414 1.6330 -1.5063 5 7 2.4196 0.2732 -2.0470 6 7 2.8930 -0.4283 -3.1634 7 6 2.7415 -1.7079 -2.9397 8 6 3.1234 -2.8197 -3.8826 9 6 2.4565 -2.5987 -5.2159 10 1 1.8196 -1.7394 -5.3654 11 6 2.6596 -3.4936 -6.2450 12 7 3.4348 -4.5403 -6.0629 13 14 1.8325 -3.2201 -7.8974 14 1 2.7182 -2.4028 -8.7651 15 1 1.5770 -4.5312 -8.5461 16 1 0.5448 -2.5087 -7.6948 17 6 2.1646 -1.8680 -1.6778 18 6 1.9695 -0.6250 -1.1442 19 1 -0.3634 0.5157 -0.8889 20 1 -0.3633 -1.0277 -0.0022 21 1 -0.3634 0.5119 0.8911 22 1 1.2646 2.0822 0.3981 23 1 2.9334 1.4416 0.5593 24 1 1.3764 2.1171 -1.9597 25 1 3.1411 2.2293 -1.6580 26 1 4.2053 -2.8287 -4.0146 27 1 2.7998 -3.7746 -3.4685 28 1 3.5773 -5.1700 -6.7867 29 1 1.9172 -2.8079 -1.2068 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261264346.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:32 Heat of formation + Delta-G solvation = 107.800667 kcal Electronic energy + Delta-G solvation = -13173.057670 eV Core-core repulsion = 10905.927857 eV Total energy + Delta-G solvation = -2267.129813 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.51849 -37.44198 -33.28408 -32.29489 -29.93912 -28.50494 -27.02312 -25.73332 -23.35663 -21.98770 -19.66201 -18.91929 -16.67446 -16.16098 -15.46326 -14.92016 -14.52718 -14.38512 -13.76633 -13.14229 -12.97671 -12.49799 -12.21902 -12.04230 -11.82506 -11.47330 -11.26052 -10.68847 -10.68221 -10.08502 -9.65198 -9.29514 -9.24347 -8.37860 -8.00924 -7.71444 -5.96871 -3.97605 2.36338 2.74834 3.37278 3.42133 3.45938 3.54044 3.68055 4.36481 4.52469 4.64650 4.91981 5.16271 5.23387 5.30580 5.39388 5.51660 5.69040 5.86099 5.99292 6.10847 6.47630 6.60821 6.87011 7.39423 7.49230 7.64995 7.76587 8.00784 8.37136 8.70209 9.05770 9.64692 11.14326 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.057377 B = 0.007367 C = 0.007205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.881094 B = 3799.758648 C = 3885.284319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.468 5.468 3 C 0.037 3.963 4 C 0.103 3.897 5 N -0.432 5.432 6 N -0.264 5.264 7 C 0.127 3.873 8 C 0.090 3.910 9 C -0.505 4.505 10 H 0.058 0.942 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.247 4.247 18 C 0.202 3.798 19 H 0.033 0.967 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.262 0.738 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 10.553 12.232 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.190 5.190 3 C -0.091 4.091 4 C -0.020 4.020 5 N -0.218 5.218 6 N -0.085 5.085 7 C -0.039 4.039 8 C 0.051 3.949 9 C -0.544 4.544 10 H 0.076 0.924 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.278 4.278 18 C -0.017 4.017 19 H 0.052 0.948 20 H 0.099 0.901 21 H 0.096 0.904 22 H 0.120 0.880 23 H 0.119 0.881 24 H 0.100 0.900 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.253 11.217 11.686 16.747 hybrid contribution -0.997 0.015 -0.951 1.378 sum -5.250 11.232 10.734 16.400 Atomic orbital electron populations 1.22552 0.84963 1.03710 1.00951 1.60476 1.09265 1.13949 1.35277 1.23720 1.02542 0.88745 0.94096 1.22734 1.03295 0.82133 0.93859 1.50743 1.51491 1.05639 1.13935 1.77568 1.23856 1.05339 1.01733 1.23290 0.94026 0.93058 0.93539 1.17880 0.97653 0.88274 0.91044 1.21060 1.28729 1.09015 0.95552 0.92395 1.24971 0.95435 0.95124 0.98855 1.69946 1.37891 1.13003 1.32788 0.86512 0.79826 0.77337 0.83851 1.20659 1.21206 1.19984 1.20512 1.14972 0.94447 0.97857 1.20821 1.01285 0.92845 0.86791 0.94805 0.90134 0.90401 0.87985 0.88112 0.90039 0.88600 0.94165 0.93903 0.92886 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.28 60.06 0.56 0.84 15 2 N -0.47 -6.56 5.40 -178.86 -0.97 -7.53 15 3 C 0.04 0.38 7.09 -2.32 -0.02 0.36 15 4 C 0.10 1.34 7.98 -2.71 -0.02 1.32 15 5 N -0.43 -8.46 4.95 -58.76 -0.29 -8.75 15 6 N -0.26 -6.43 12.65 33.62 0.43 -6.00 15 7 C 0.13 3.13 6.42 -82.50 -0.53 2.60 15 8 C 0.09 2.46 5.55 -29.03 -0.16 2.30 15 9 C -0.50 -14.87 9.06 -34.44 -0.31 -15.18 15 10 H 0.06 1.74 7.74 -52.48 -0.41 1.33 15 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 12 N -0.90 -26.99 13.29 55.43 0.74 -26.26 15 13 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 15 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 15 17 C -0.25 -5.23 10.76 -39.61 -0.43 -5.66 15 18 C 0.20 3.78 6.87 -152.95 -1.05 2.73 15 19 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 15 20 H 0.08 0.95 8.14 -51.93 -0.42 0.52 15 21 H 0.08 0.63 8.11 -51.93 -0.42 0.21 15 22 H 0.10 0.68 7.77 -51.93 -0.40 0.28 15 23 H 0.10 0.95 8.14 -51.93 -0.42 0.52 15 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.10 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.04 1.15 8.14 -51.93 -0.42 0.73 15 27 H 0.04 1.17 8.12 -51.93 -0.42 0.75 15 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 29 H 0.14 2.73 8.06 -52.49 -0.42 2.31 15 LS Contribution 252.58 15.07 3.81 3.81 Total: -1.00 -34.00 252.58 -7.11 -41.11 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -3.75 Total: -4.56 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.06 Total: -9.12 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.10 Total: -48.54 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -34.00 -7.11 -41.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264346.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.910 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds