Wall clock time and date at job start Mon Mar 30 2020 02:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48109 * 110.99852 * 2 1 4 4 C 1.54596 * 101.95413 * 264.84356 * 3 2 1 5 5 N 1.47410 * 103.11847 * 335.19103 * 4 3 2 6 6 N 1.40095 * 142.65832 * 196.01778 * 5 4 3 7 7 C 1.30780 * 108.32757 * 179.39087 * 6 5 4 8 8 C 1.50703 * 125.83444 * 180.11574 * 7 6 5 9 9 C 1.50704 * 109.46757 * 305.02512 * 8 7 6 10 10 H 1.08003 * 120.00278 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00002 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00062 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00190 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47064 * 90.00407 * 13 11 9 15 15 H 1.48494 * 109.47409 * 210.00428 * 13 11 9 16 16 H 1.48503 * 109.47407 * 330.00708 * 13 11 9 17 17 C 1.39670 * 108.33733 * 0.15111 * 7 6 5 18 18 C 1.35070 * 109.14689 * 15.76946 * 5 4 3 19 19 H 1.09001 * 109.47273 * 59.87922 * 1 2 3 20 20 H 1.09000 * 109.47022 * 179.87491 * 1 2 3 21 21 H 1.08999 * 109.47747 * 299.87461 * 1 2 3 22 22 H 1.09002 * 110.94041 * 23.01974 * 3 2 1 23 23 H 1.08997 * 110.93852 * 146.67247 * 3 2 1 24 24 H 1.09000 * 110.68027 * 93.58052 * 4 3 2 25 25 H 1.09003 * 110.68090 * 216.74964 * 4 3 2 26 26 H 1.09003 * 109.47136 * 65.02208 * 8 7 6 27 27 H 1.08993 * 109.47525 * 185.03136 * 8 7 6 28 28 H 0.96992 * 120.00188 * 179.97438 * 12 11 9 29 29 H 1.07995 * 126.04459 * 180.14840 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9997 1.3827 0.0000 4 6 2.2414 1.6330 -1.5063 5 7 2.4196 0.2732 -2.0470 6 7 2.8930 -0.4283 -3.1634 7 6 2.7415 -1.7079 -2.9397 8 6 3.1234 -2.8197 -3.8826 9 6 2.4565 -2.5987 -5.2159 10 1 1.8196 -1.7394 -5.3654 11 6 2.6596 -3.4936 -6.2450 12 7 3.4348 -4.5403 -6.0629 13 14 1.8325 -3.2201 -7.8974 14 1 2.7182 -2.4028 -8.7651 15 1 1.5770 -4.5312 -8.5461 16 1 0.5448 -2.5087 -7.6948 17 6 2.1646 -1.8680 -1.6778 18 6 1.9695 -0.6250 -1.1442 19 1 -0.3634 0.5157 -0.8889 20 1 -0.3633 -1.0277 -0.0022 21 1 -0.3634 0.5119 0.8911 22 1 1.2646 2.0822 0.3981 23 1 2.9334 1.4416 0.5593 24 1 1.3764 2.1171 -1.9597 25 1 3.1411 2.2293 -1.6580 26 1 4.2053 -2.8287 -4.0146 27 1 2.7998 -3.7746 -3.4685 28 1 3.5773 -5.1700 -6.7867 29 1 1.9172 -2.8079 -1.2068 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261264346.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:32 Heat of formation + Delta-G solvation = 83.245418 kcal Electronic energy + Delta-G solvation = -13174.122466 eV Core-core repulsion = 10905.927857 eV Total energy + Delta-G solvation = -2268.194609 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.94488 -38.80136 -35.34803 -33.73532 -31.64853 -30.05816 -28.62730 -26.85342 -25.35514 -23.18169 -21.12075 -20.59840 -18.47352 -17.78118 -16.78101 -16.60998 -16.05557 -15.76699 -14.96093 -14.59434 -14.14715 -14.05001 -13.99207 -13.59996 -13.33051 -12.96197 -12.66869 -12.60619 -12.30438 -11.92874 -11.69658 -11.26556 -10.73936 -10.53636 -9.61230 -9.20850 -8.21032 -6.31303 0.86019 1.38542 1.40347 1.41454 1.51975 1.86830 2.41428 2.45432 3.11537 3.40032 3.83007 3.89267 4.19003 4.32032 4.35965 4.46311 4.53049 4.68856 4.81030 4.89208 5.03575 5.13558 5.24925 5.39592 5.68302 5.74315 5.83282 6.13988 6.25616 6.75937 7.01255 7.35494 8.90456 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.057377 B = 0.007367 C = 0.007205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.881094 B = 3799.758648 C = 3885.284319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.472 5.472 3 C 0.045 3.955 4 C 0.087 3.913 5 N -0.432 5.432 6 N -0.309 5.309 7 C 0.102 3.898 8 C 0.099 3.901 9 C -0.526 4.526 10 H 0.046 0.954 11 C 0.007 3.993 12 N -0.927 5.927 13 Si 0.968 3.032 14 H -0.273 1.273 15 H -0.273 1.273 16 H -0.270 1.270 17 C -0.280 4.280 18 C 0.225 3.775 19 H 0.030 0.970 20 H 0.069 0.931 21 H 0.122 0.878 22 H 0.153 0.847 23 H 0.113 0.887 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.012 0.988 27 H 0.030 0.970 28 H 0.268 0.732 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.412 12.707 13.404 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.194 5.194 3 C -0.081 4.081 4 C -0.034 4.034 5 N -0.219 5.219 6 N -0.132 5.132 7 C -0.063 4.063 8 C 0.060 3.940 9 C -0.565 4.565 10 H 0.064 0.936 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.792 3.208 14 H -0.199 1.199 15 H -0.198 1.198 16 H -0.195 1.195 17 C -0.311 4.311 18 C 0.003 3.997 19 H 0.049 0.951 20 H 0.088 0.912 21 H 0.140 0.860 22 H 0.170 0.830 23 H 0.131 0.869 24 H 0.119 0.881 25 H 0.131 0.869 26 H 0.030 0.970 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.749 13.390 12.873 19.444 hybrid contribution -0.541 -0.522 -1.163 1.385 sum -6.290 12.869 11.710 18.501 Atomic orbital electron populations 1.22695 0.82806 1.03837 1.02902 1.60596 1.10964 1.15873 1.32009 1.24029 1.04631 0.87323 0.92118 1.23379 1.05034 0.79446 0.95541 1.51158 1.49930 1.08227 1.12558 1.77329 1.25649 1.05552 1.04672 1.22811 0.96052 0.92807 0.94582 1.17540 0.95696 0.89287 0.91456 1.21247 1.29225 1.08993 0.97007 0.93590 1.25863 0.95870 0.94591 1.02773 1.70054 1.38707 1.13682 1.34246 0.85408 0.78759 0.77839 0.78761 1.19892 1.19753 1.19512 1.20532 1.16815 0.96348 0.97399 1.21076 0.98852 0.91987 0.87739 0.95126 0.91204 0.85994 0.82973 0.86882 0.88121 0.86946 0.96986 0.95214 0.92348 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.28 127.69 1.19 1.63 15 2 N -0.47 -11.63 5.40 -719.78 -3.89 -15.51 15 3 C 0.05 0.71 7.09 86.61 0.61 1.33 15 4 C 0.09 1.97 7.98 86.75 0.69 2.66 15 5 N -0.43 -16.52 4.95 -339.83 -1.68 -18.20 15 6 N -0.31 -15.48 12.65 -47.53 -0.60 -16.08 15 7 C 0.10 5.28 6.42 43.06 0.28 5.56 15 8 C 0.10 5.75 5.55 29.10 0.16 5.91 15 9 C -0.53 -32.30 9.06 25.60 0.23 -32.07 15 10 H 0.05 2.86 7.74 -2.91 -0.02 2.84 15 11 C 0.01 0.44 5.46 84.65 0.46 0.90 15 12 N -0.93 -57.21 13.29 21.45 0.28 -56.92 15 13 Si 0.97 46.34 29.54 68.60 2.03 48.37 15 14 H -0.27 -12.72 7.11 99.48 0.71 -12.01 15 15 H -0.27 -12.37 7.11 99.48 0.71 -11.67 15 16 H -0.27 -12.66 7.11 99.48 0.71 -11.95 15 17 C -0.28 -12.22 10.76 22.25 0.24 -11.98 15 18 C 0.23 8.21 6.87 131.44 0.90 9.11 15 19 H 0.03 0.61 8.14 -2.39 -0.02 0.59 15 20 H 0.07 1.47 8.14 -2.39 -0.02 1.45 15 21 H 0.12 1.26 8.11 -2.39 -0.02 1.24 15 22 H 0.15 0.96 7.77 -2.39 -0.02 0.94 15 23 H 0.11 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.10 1.95 8.14 -2.39 -0.02 1.93 15 25 H 0.11 2.20 8.14 -2.39 -0.02 2.18 15 26 H 0.01 0.75 8.14 -2.39 -0.02 0.73 15 27 H 0.03 1.74 8.12 -2.39 -0.02 1.72 15 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 15 29 H 0.15 6.01 8.06 -2.91 -0.02 5.98 15 Total: -1.00 -77.24 252.58 2.04 -75.20 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: 1.13 Total: 0.10 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 4.77 Total: -16.96 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -5.89 Total: -106.72 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -77.24 2.04 -75.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264346.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.446 kcal (2) G-P(sol) polarization free energy of solvation -77.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds