Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 F 1.39897 * 109.47035 * 299.99684 * 9 7 2 12 12 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 13 13 C 1.53036 * 113.15255 * 165.54828 * 12 9 7 14 14 S 1.81500 * 89.86177 * 211.86903 * 13 12 9 15 15 O 1.42105 * 112.71618 * 280.42829 * 14 13 12 16 16 O 1.42104 * 112.86154 * 136.68326 * 14 13 12 17 17 C 1.53043 * 113.15119 * 65.11613 * 12 9 7 18 18 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 19 19 H 1.09001 * 112.49275 * 295.33761 * 12 9 7 20 20 H 1.08999 * 113.15107 * 327.10691 * 13 12 9 21 21 H 1.09001 * 113.15134 * 96.59358 * 13 12 9 22 22 H 1.09003 * 113.14666 * 263.40567 * 17 12 9 23 23 H 1.08997 * 113.14615 * 32.84680 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 9 0.4464 -2.5730 1.1425 12 6 2.2454 -3.6620 0.0018 13 6 1.6005 -5.0047 0.3531 14 16 3.1505 -5.5409 1.1302 15 8 4.1156 -5.9800 0.1840 16 8 2.9460 -6.2024 2.3712 17 6 3.0854 -3.7340 1.2791 18 1 -0.4850 -0.8401 -0.0004 19 1 2.8446 -3.6993 -0.9079 20 1 0.7763 -4.9122 1.0604 21 1 1.3338 -5.5945 -0.5239 22 1 4.0618 -3.2602 1.1770 23 1 2.5482 -3.3954 2.1649 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261292001.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = -136.941476 kcal Electronic energy + Delta-G solvation = -12154.577356 eV Core-core repulsion = 9622.973866 eV Total energy + Delta-G solvation = -2531.603490 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 208.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.12477 -38.44801 -37.71000 -37.05277 -34.98014 -29.44038 -27.55797 -25.29893 -21.60871 -19.77053 -19.39028 -17.83099 -17.39654 -17.06242 -16.57290 -15.89030 -15.74711 -15.52862 -14.76243 -14.15863 -13.67649 -13.33595 -13.31046 -13.06164 -12.68048 -12.60083 -12.35406 -12.19732 -11.95315 -11.25818 -11.16200 -10.67682 -10.51221 -8.74085 -6.58209 -0.77696 1.05331 1.53710 1.60930 1.80006 2.52257 2.73832 3.09003 3.10200 3.34510 3.76432 4.02601 4.21878 4.33924 4.56033 4.63148 4.95272 5.02933 5.45447 5.69496 6.06842 6.41115 7.31424 8.64539 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.063004 B = 0.009672 C = 0.009059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.309852 B = 2894.218620 C = 3090.119215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.024 4.024 3 Si 1.118 2.882 4 H -0.287 1.287 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.647 4.647 8 H 0.071 0.929 9 C 0.208 3.792 10 H 0.020 0.980 11 F -0.250 7.250 12 C -0.092 4.092 13 C -0.592 4.592 14 S 2.465 3.535 15 O -0.938 6.938 16 O -0.957 6.957 17 C -0.580 4.580 18 H 0.261 0.739 19 H 0.130 0.870 20 H 0.139 0.861 21 H 0.147 0.853 22 H 0.133 0.867 23 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 -8.102 0.260 10.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.224 4.224 3 Si 0.939 3.061 4 H -0.212 1.212 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.685 4.685 8 H 0.089 0.911 9 C 0.171 3.829 10 H 0.038 0.962 11 F -0.231 7.231 12 C -0.113 4.113 13 C -0.720 4.720 14 S 2.648 3.352 15 O -0.936 6.936 16 O -0.954 6.954 17 C -0.709 4.709 18 H 0.071 0.929 19 H 0.148 0.852 20 H 0.157 0.843 21 H 0.165 0.835 22 H 0.152 0.848 23 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.495 -7.496 0.565 9.935 hybrid contribution -0.944 -0.605 -0.223 1.143 sum 5.551 -8.101 0.342 9.826 Atomic orbital electron populations 1.70867 1.08165 1.30674 1.46463 1.27458 0.96436 1.07085 0.91442 0.82926 0.74133 0.70818 0.78234 1.21240 1.19487 1.18761 1.22675 0.95729 0.92181 1.57866 0.91053 1.18985 0.87601 0.94831 0.81501 0.96188 1.92659 1.76811 1.97451 1.56195 1.22011 0.97129 0.93636 0.98474 1.30955 1.21180 1.05124 1.14783 1.06878 0.77452 0.76676 0.74184 1.93645 1.57308 1.80105 1.62511 1.93564 1.85520 1.73594 1.42752 1.30845 1.08552 1.26331 1.05135 0.92907 0.85214 0.84281 0.83488 0.84835 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.56 21.45 0.29 -55.55 14 2 C -0.02 -1.30 5.42 84.65 0.46 -0.84 14 3 Si 1.12 47.90 29.90 68.60 2.05 49.95 14 4 H -0.29 -12.50 7.11 99.48 0.71 -11.79 14 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 14 6 H -0.26 -10.23 7.11 99.48 0.71 -9.53 14 7 C -0.65 -34.17 8.48 25.60 0.22 -33.96 14 8 H 0.07 3.56 7.69 -2.91 -0.02 3.53 14 9 C 0.21 9.94 2.77 29.85 0.08 10.02 14 10 H 0.02 1.02 8.01 -2.39 -0.02 1.00 14 11 F -0.25 -12.80 14.37 44.97 0.65 -12.15 14 12 C -0.09 -3.19 3.33 -10.77 -0.04 -3.22 14 13 C -0.59 -15.87 7.41 71.99 0.53 -15.34 14 14 S 2.47 60.89 7.55 -56.49 -0.43 60.46 14 15 O -0.94 -26.77 18.18 -127.87 -2.32 -29.10 14 16 O -0.96 -28.80 18.18 -127.87 -2.32 -31.12 14 17 C -0.58 -17.60 6.98 72.00 0.50 -17.10 14 18 H 0.26 15.98 6.59 -92.70 -0.61 15.37 14 19 H 0.13 4.03 8.14 -2.39 -0.02 4.01 14 20 H 0.14 3.96 7.34 -2.39 -0.02 3.95 14 21 H 0.15 3.05 8.14 -2.39 -0.02 3.03 14 22 H 0.13 3.62 8.14 -2.39 -0.02 3.60 14 23 H 0.13 4.38 7.64 -2.39 -0.02 4.37 14 Total: -1.00 -71.52 219.15 1.05 -70.48 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 1.37 Total: 7.48 kcal Atomic # 6 Polarization: -62.20 SS G_CDS: 1.76 Total: -60.44 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.29 Total: -55.55 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -4.65 Total: -60.22 kcal Atomic # 9 Polarization: -12.80 SS G_CDS: 0.65 Total: -12.15 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.05 Total: 49.95 kcal Atomic # 16 Polarization: 60.89 SS G_CDS: -0.43 Total: 60.46 kcal Total: -71.52 1.05 -70.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292001.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.466 kcal (2) G-P(sol) polarization free energy of solvation -71.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds