Wall clock time and date at job start Mon Mar 30 2020 02:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 H 1.08994 * 108.83349 * 307.92435 * 10 9 7 12 12 C 1.54259 * 108.86957 * 66.45937 * 10 9 7 13 13 S 1.83953 * 102.58487 * 145.34627 * 12 10 9 14 14 C 1.83961 * 94.80585 * 325.50107 * 13 12 10 15 15 C 1.52335 * 108.86464 * 189.53099 * 10 9 7 16 16 F 1.39898 * 108.87257 * 359.97438 * 15 10 9 17 17 F 1.39902 * 108.86886 * 118.36576 * 15 10 9 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 20 20 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 21 21 H 1.09008 * 110.78253 * 263.61535 * 12 10 9 22 22 H 1.09003 * 110.78770 * 27.06834 * 12 10 9 23 23 H 1.09000 * 110.78968 * 152.76691 * 14 13 12 24 24 H 1.09000 * 110.78807 * 276.03554 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 1 2.9559 -3.5167 -0.8164 12 6 3.0126 -3.6635 1.3355 13 16 3.2639 -5.4582 1.6514 14 6 1.6608 -5.9713 0.9091 15 6 1.4849 -4.9600 -0.2426 16 9 0.1240 -4.6678 -0.3835 17 9 1.9449 -5.5412 -1.4291 18 1 -0.4849 0.8400 0.0004 19 1 0.6240 -2.5575 0.8880 20 1 0.6247 -2.5562 -0.8920 21 1 3.9693 -3.1511 1.2333 22 1 2.4130 -3.2118 2.1257 23 1 1.7208 -6.9893 0.5242 24 1 0.8520 -5.8806 1.6342 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261294375.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:13 Heat of formation + Delta-G solvation = -112.432350 kcal Electronic energy + Delta-G solvation = -12127.657217 eV Core-core repulsion = 9609.489311 eV Total energy + Delta-G solvation = -2518.167906 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 208.043 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.62915 -46.52923 -35.70424 -32.62789 -30.04258 -27.09243 -24.93442 -22.43810 -19.70586 -17.46127 -16.96125 -16.23484 -15.99221 -14.83952 -14.60008 -14.08388 -13.79301 -13.02469 -12.84913 -12.75072 -12.26620 -12.04200 -11.85380 -11.27293 -11.15470 -10.91060 -10.56579 -10.33528 -9.97911 -9.41434 -9.26214 -8.47996 -7.64887 -6.11797 -4.16825 1.83717 2.37985 3.25787 3.32698 3.34516 3.87163 4.33093 4.44870 4.65090 4.91771 5.24194 5.35148 5.44322 5.49274 5.71109 6.17227 6.38127 6.52192 7.46968 7.50678 7.82969 8.19623 8.88142 9.48321 10.99017 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.045483 B = 0.010372 C = 0.009240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.466686 B = 2698.951923 C = 3029.680668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.034 3.966 10 C -0.136 4.136 11 H 0.102 0.898 12 C -0.029 4.029 13 S -0.300 6.300 14 C -0.110 4.110 15 C 0.293 3.707 16 F -0.188 7.188 17 F -0.200 7.200 18 H 0.263 0.737 19 H 0.027 0.973 20 H 0.032 0.968 21 H 0.112 0.888 22 H 0.104 0.896 23 H 0.121 0.879 24 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 -8.647 1.948 9.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.157 4.157 11 H 0.120 0.880 12 C -0.176 4.176 13 S -0.074 6.074 14 C -0.259 4.259 15 C 0.255 3.745 16 F -0.169 7.169 17 F -0.181 7.181 18 H 0.073 0.927 19 H 0.046 0.954 20 H 0.051 0.949 21 H 0.131 0.869 22 H 0.122 0.878 23 H 0.140 0.860 24 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.168 -9.182 2.450 10.377 hybrid contribution -0.601 1.482 -0.676 1.736 sum 3.567 -7.699 1.774 8.669 Atomic orbital electron populations 1.69966 1.06092 1.26928 1.49710 1.24999 0.94836 0.99335 0.94925 0.86561 0.79793 0.83247 0.78224 1.20566 1.21146 1.19774 1.21117 0.92972 0.90466 1.52047 0.92334 1.19278 0.92674 0.89568 0.98941 1.22767 1.00460 0.93776 0.98649 0.87985 1.24273 1.04361 0.89644 0.99325 1.87859 1.26192 1.12107 1.81206 1.25107 0.99257 1.02446 0.99122 1.21952 0.77891 0.92717 0.81989 1.93040 1.33553 1.94201 1.96124 1.93003 1.88879 1.85959 1.50265 0.92742 0.95431 0.94949 0.86945 0.87779 0.86027 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.09 14 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 14 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 14 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 14 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 14 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 14 7 C -0.53 -13.96 8.60 -34.44 -0.30 -14.25 14 8 H 0.06 1.48 7.65 -52.49 -0.40 1.07 14 9 C 0.03 0.82 3.40 -27.88 -0.09 0.73 14 10 C -0.14 -2.68 2.46 -90.30 -0.22 -2.90 14 11 H 0.10 2.03 7.88 -51.93 -0.41 1.62 14 12 C -0.03 -0.50 6.33 37.82 0.24 -0.26 14 13 S -0.30 -4.73 23.27 -107.50 -2.50 -7.23 14 14 C -0.11 -1.63 6.95 37.82 0.26 -1.36 14 15 C 0.29 5.31 2.31 -26.41 -0.06 5.25 14 16 F -0.19 -3.80 14.96 2.25 0.03 -3.76 14 17 F -0.20 -3.69 16.82 2.25 0.04 -3.65 14 18 H 0.26 7.22 8.31 -40.82 -0.34 6.88 14 19 H 0.03 0.71 7.98 -51.93 -0.41 0.30 14 20 H 0.03 0.88 7.41 -51.93 -0.38 0.49 14 21 H 0.11 1.85 8.14 -51.92 -0.42 1.42 14 22 H 0.10 1.86 7.75 -51.93 -0.40 1.45 14 23 H 0.12 1.54 8.09 -51.93 -0.42 1.12 14 24 H 0.12 1.57 8.12 -51.93 -0.42 1.15 14 LS Contribution 226.04 15.07 3.41 3.41 Total: -1.00 -28.33 226.04 -5.99 -34.31 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -2.41 Total: -2.59 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.27 Total: -11.21 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.74 Total: -25.09 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.07 Total: -7.41 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -4.73 SS G_CDS: -2.50 Total: -7.23 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -28.33 -5.99 -34.31 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294375.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.119 kcal (2) G-P(sol) polarization free energy of solvation -28.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds