Wall clock time and date at job start Mon Mar 30 2020 02:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 H 1.08994 * 108.83349 * 307.92435 * 10 9 7 12 12 C 1.54259 * 108.86957 * 66.45937 * 10 9 7 13 13 S 1.83953 * 102.58487 * 145.34627 * 12 10 9 14 14 C 1.83961 * 94.80585 * 325.50107 * 13 12 10 15 15 C 1.52335 * 108.86464 * 189.53099 * 10 9 7 16 16 F 1.39898 * 108.87257 * 359.97438 * 15 10 9 17 17 F 1.39902 * 108.86886 * 118.36576 * 15 10 9 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 20 20 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 21 21 H 1.09008 * 110.78253 * 263.61535 * 12 10 9 22 22 H 1.09003 * 110.78770 * 27.06834 * 12 10 9 23 23 H 1.09000 * 110.78968 * 152.76691 * 14 13 12 24 24 H 1.09000 * 110.78807 * 276.03554 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 1 2.9559 -3.5167 -0.8164 12 6 3.0126 -3.6635 1.3355 13 16 3.2639 -5.4582 1.6514 14 6 1.6608 -5.9713 0.9091 15 6 1.4849 -4.9600 -0.2426 16 9 0.1240 -4.6678 -0.3835 17 9 1.9449 -5.5412 -1.4291 18 1 -0.4849 0.8400 0.0004 19 1 0.6240 -2.5575 0.8880 20 1 0.6247 -2.5562 -0.8920 21 1 3.9693 -3.1511 1.2333 22 1 2.4130 -3.2118 2.1257 23 1 1.7208 -6.9893 0.5242 24 1 0.8520 -5.8806 1.6342 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261294375.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:13 Heat of formation + Delta-G solvation = -128.276801 kcal Electronic energy + Delta-G solvation = -12128.344284 eV Core-core repulsion = 9609.489311 eV Total energy + Delta-G solvation = -2518.854972 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 208.043 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -50.13414 -48.04666 -37.37330 -34.59235 -31.55670 -28.83473 -26.58855 -24.21851 -21.29685 -19.15415 -18.48750 -17.77419 -17.65270 -16.53504 -16.26718 -15.63966 -15.23436 -14.47802 -14.38640 -14.33098 -14.09287 -13.63390 -13.28949 -12.97261 -12.88778 -12.64547 -12.31056 -12.00905 -11.65230 -11.25257 -11.03861 -10.58022 -8.89218 -8.21428 -6.33327 0.58794 1.02672 1.42803 1.43173 1.53860 2.38091 2.52192 2.96858 3.13633 3.29342 3.42262 3.89557 4.02173 4.27015 4.42159 4.73293 4.73940 4.88746 5.39174 5.46809 5.75202 6.12834 6.81206 7.36568 8.90478 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.045483 B = 0.010372 C = 0.009240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.466686 B = 2698.951923 C = 3029.680668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.043 3.957 10 C -0.132 4.132 11 H 0.099 0.901 12 C -0.030 4.030 13 S -0.276 6.276 14 C -0.102 4.102 15 C 0.287 3.713 16 F -0.204 7.204 17 F -0.201 7.201 18 H 0.264 0.736 19 H 0.006 0.994 20 H -0.004 1.004 21 H 0.123 0.877 22 H 0.096 0.904 23 H 0.150 0.850 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -9.175 2.499 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.005 3.995 10 C -0.152 4.152 11 H 0.117 0.883 12 C -0.178 4.178 13 S -0.049 6.049 14 C -0.251 4.251 15 C 0.249 3.751 16 F -0.185 7.185 17 F -0.182 7.182 18 H 0.073 0.927 19 H 0.024 0.976 20 H 0.014 0.986 21 H 0.141 0.859 22 H 0.115 0.885 23 H 0.168 0.832 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.616 -9.726 3.004 11.626 hybrid contribution -1.063 1.592 -0.875 2.105 sum 4.553 -8.134 2.129 9.562 Atomic orbital electron populations 1.70105 1.07899 1.27862 1.51192 1.25926 0.95617 1.03270 0.94609 0.85465 0.78863 0.78532 0.78309 1.20233 1.21104 1.18180 1.21553 0.93722 0.91278 1.51009 0.91133 1.19026 0.92982 0.91436 0.96105 1.22624 0.99387 0.92989 1.00213 0.88289 1.24105 1.04330 0.91822 0.97507 1.87807 1.26462 1.09560 1.81055 1.25181 0.99394 1.02668 0.97833 1.22135 0.76775 0.93064 0.83145 1.93013 1.34772 1.94431 1.96294 1.92998 1.88788 1.85822 1.50634 0.92743 0.97582 0.98569 0.85901 0.88546 0.83184 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.29 21.45 0.28 -54.89 14 2 C 0.00 0.23 5.46 84.66 0.46 0.70 14 3 Si 0.96 42.52 29.54 68.60 2.03 44.55 14 4 H -0.28 -12.00 7.11 99.48 0.71 -11.29 14 5 H -0.29 -12.49 7.11 99.48 0.71 -11.78 14 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 14 7 C -0.54 -28.52 8.60 25.60 0.22 -28.30 14 8 H 0.07 3.49 7.65 -2.91 -0.02 3.47 14 9 C 0.04 2.14 3.40 29.85 0.10 2.24 14 10 C -0.13 -5.12 2.46 -10.59 -0.03 -5.15 14 11 H 0.10 3.89 7.88 -2.39 -0.02 3.87 14 12 C -0.03 -1.00 6.33 72.41 0.46 -0.54 14 13 S -0.28 -7.92 23.27 -56.49 -1.31 -9.23 14 14 C -0.10 -2.74 6.95 72.41 0.50 -2.24 14 15 C 0.29 10.11 2.31 30.80 0.07 10.18 14 16 F -0.20 -8.28 14.96 44.97 0.67 -7.60 14 17 F -0.20 -7.16 16.82 44.97 0.76 -6.40 14 18 H 0.26 14.76 8.31 -92.71 -0.77 13.99 14 19 H 0.01 0.31 7.98 -2.39 -0.02 0.30 14 20 H 0.00 -0.23 7.41 -2.39 -0.02 -0.25 14 21 H 0.12 3.80 8.14 -2.38 -0.02 3.78 14 22 H 0.10 3.36 7.75 -2.39 -0.02 3.34 14 23 H 0.15 3.22 8.09 -2.39 -0.02 3.20 14 24 H 0.13 3.20 8.12 -2.39 -0.02 3.18 14 Total: -1.00 -60.25 226.04 5.41 -54.84 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: 1.20 Total: 1.85 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 1.79 Total: -23.10 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.28 Total: -54.89 kcal Atomic # 9 Polarization: -15.43 SS G_CDS: 1.43 Total: -14.01 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.31 Total: -9.23 kcal Total: -60.25 5.41 -54.84 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294375.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.441 kcal (2) G-P(sol) polarization free energy of solvation -60.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds