Wall clock time and date at job start Mon Mar 30 2020 02:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99697 * 2 1 4 4 H 1.48498 * 109.46874 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47218 * 299.99671 * 3 2 1 6 6 H 1.48503 * 109.47066 * 59.99800 * 3 2 1 7 7 C 1.37871 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00586 * 180.02562 * 7 2 1 9 9 C 1.50712 * 119.99643 * 0.02562 * 7 2 1 10 10 C 1.52995 * 108.82883 * 61.46670 * 9 7 2 11 11 F 1.39904 * 109.47276 * 58.52943 * 10 9 7 12 12 F 1.39898 * 109.46997 * 178.53006 * 10 9 7 13 13 C 1.52333 * 108.86606 * 179.97438 * 9 7 2 14 14 C 1.54260 * 112.47388 * 120.88896 * 13 9 7 15 15 S 1.83763 * 102.67096 * 335.32779 * 14 13 9 16 16 C 1.54259 * 108.86625 * 303.07393 * 9 7 2 17 17 H 0.96996 * 119.99896 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47504 * 298.53375 * 10 9 7 19 19 H 1.09002 * 108.86808 * 241.63837 * 13 9 7 20 20 H 1.09004 * 108.87242 * 0.14397 * 13 9 7 21 21 H 1.09007 * 110.78707 * 93.67041 * 14 13 9 22 22 H 1.09001 * 110.79108 * 217.12161 * 14 13 9 23 23 H 1.08996 * 110.78994 * 21.98289 * 16 9 7 24 24 H 1.09002 * 110.78619 * 145.25121 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 0.4057 -2.5812 -1.2720 11 9 1.2381 -2.4831 -2.3921 12 9 -0.2743 -3.8035 -1.3020 13 6 2.2532 -3.6465 0.0005 14 6 2.0899 -4.5720 1.2238 15 16 1.2998 -3.4678 2.4621 16 6 0.3113 -2.5326 1.2234 17 1 -0.4850 0.8400 -0.0004 18 1 -0.3154 -1.7639 -1.2825 19 1 2.1160 -4.2343 -0.9071 20 1 3.2620 -3.2335 0.0031 21 1 1.4410 -5.4152 0.9871 22 1 3.0605 -4.9176 1.5798 23 1 0.1015 -1.5234 1.5777 24 1 -0.6138 -3.0578 0.9860 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261327652.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:40 Heat of formation + Delta-G solvation = -128.043500 kcal Electronic energy + Delta-G solvation = -12595.811115 eV Core-core repulsion = 10076.966259 eV Total energy + Delta-G solvation = -2518.844856 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 208.043 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.58907 -47.52789 -38.02257 -34.22215 -30.74894 -27.69724 -26.67393 -24.59340 -20.75719 -18.95626 -18.04759 -17.68501 -17.33036 -16.69260 -16.08616 -15.50664 -14.74466 -14.46934 -14.20215 -13.95872 -13.80412 -13.62032 -12.96566 -12.64813 -12.44402 -12.37324 -12.18559 -11.92702 -11.53237 -11.00133 -10.75699 -10.54851 -8.53602 -8.25914 -6.38820 1.18604 1.41583 1.46601 1.55571 1.56681 2.38090 2.92976 3.46087 3.88717 3.93874 4.11998 4.21074 4.37534 4.57387 4.72246 4.74166 4.88160 5.06601 5.18436 5.51073 5.73092 6.08332 6.62956 7.30156 8.77290 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.031233 B = 0.017025 C = 0.013460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.265591 B = 1644.230714 C = 2079.792514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.024 3.976 10 C 0.252 3.748 11 F -0.221 7.221 12 F -0.231 7.231 13 C -0.112 4.112 14 C -0.046 4.046 15 S -0.355 6.355 16 C -0.016 4.016 17 H 0.272 0.728 18 H 0.119 0.881 19 H 0.063 0.937 20 H 0.073 0.927 21 H 0.095 0.905 22 H 0.119 0.881 23 H 0.105 0.895 24 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.564 -4.385 -0.094 4.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.021 3.979 10 C 0.197 3.803 11 F -0.202 7.202 12 F -0.212 7.212 13 C -0.150 4.150 14 C -0.193 4.193 15 S -0.129 6.129 16 C -0.164 4.164 17 H 0.081 0.919 18 H 0.136 0.864 19 H 0.082 0.918 20 H 0.091 0.909 21 H 0.113 0.887 22 H 0.137 0.863 23 H 0.123 0.877 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.525 -4.208 1.117 4.613 hybrid contribution 0.042 0.864 -1.380 1.629 sum 1.567 -3.343 -0.263 3.702 Atomic orbital electron populations 1.69756 1.06681 1.28297 1.50206 1.25635 0.95844 1.02315 0.93766 0.85459 0.79113 0.79387 0.77557 1.19412 1.20616 1.20605 1.21306 0.93186 0.89350 1.50754 0.91852 1.19714 0.92269 0.96493 0.89415 1.22675 0.89539 0.82728 0.85394 1.92809 1.74869 1.96451 1.56120 1.92821 1.81534 1.49877 1.97019 1.22044 1.00674 0.94943 0.97380 1.24081 1.03614 0.97975 0.93654 1.87409 1.59546 1.45444 1.20496 1.24064 0.96837 1.01595 0.93924 0.91855 0.86407 0.91802 0.90856 0.88661 0.86300 0.87702 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.76 9.54 21.45 0.20 -45.55 14 2 C 0.02 1.21 4.87 84.65 0.41 1.62 14 3 Si 0.96 40.72 29.54 68.60 2.03 42.75 14 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 14 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 14 6 H -0.28 -11.80 7.11 99.48 0.71 -11.10 14 7 C -0.51 -25.28 7.57 25.60 0.19 -25.09 14 8 H 0.06 3.19 7.19 -2.91 -0.02 3.17 14 9 C 0.02 1.09 0.34 -52.72 -0.02 1.07 14 10 C 0.25 11.57 3.72 71.98 0.27 11.84 14 11 F -0.22 -10.37 16.44 44.97 0.74 -9.63 14 12 F -0.23 -9.98 16.16 44.97 0.73 -9.25 14 13 C -0.11 -4.38 5.27 30.80 0.16 -4.21 14 14 C -0.05 -1.54 7.44 72.41 0.54 -1.00 14 15 S -0.36 -14.41 23.26 -56.49 -1.31 -15.72 14 16 C -0.02 -0.71 5.81 72.41 0.42 -0.29 14 17 H 0.27 13.05 8.31 -92.71 -0.77 12.28 14 18 H 0.12 5.80 6.17 -2.39 -0.01 5.79 14 19 H 0.06 2.42 7.01 -2.39 -0.02 2.41 14 20 H 0.07 2.89 7.14 -2.38 -0.02 2.87 14 21 H 0.09 2.90 8.14 -2.38 -0.02 2.88 14 22 H 0.12 3.36 8.14 -2.39 -0.02 3.34 14 23 H 0.10 5.27 5.94 -2.39 -0.01 5.25 14 24 H 0.06 2.76 7.38 -2.39 -0.02 2.74 14 Total: -1.00 -51.12 216.72 5.57 -45.55 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 1.21 Total: 7.92 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 1.98 Total: -16.06 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.20 Total: -45.55 kcal Atomic # 9 Polarization: -20.35 SS G_CDS: 1.47 Total: -18.88 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Atomic # 16 Polarization: -14.41 SS G_CDS: -1.31 Total: -15.72 kcal Total: -51.12 5.57 -45.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327652.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.491 kcal (2) G-P(sol) polarization free energy of solvation -51.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds