Wall clock time and date at job start Mon Mar 30 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36635 * 125.45492 * 51.60711 * 3 2 1 5 5 C 1.37618 * 113.26559 * 179.97438 * 4 3 2 6 6 C 1.33717 * 115.09620 * 359.97438 * 5 4 3 7 7 C 1.50696 * 124.50749 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46879 * 90.03228 * 7 6 5 9 9 C 1.36936 * 119.99864 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99907 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00397 * 179.97438 * 9 8 7 12 12 N 1.31623 * 119.99525 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00259 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47024 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46772 * 120.00343 * 13 11 9 16 16 H 1.48497 * 109.46885 * 240.00037 * 13 11 9 17 17 S 1.70609 * 110.97575 * 0.02562 * 6 5 4 18 18 H 1.07992 * 123.36750 * 359.73244 * 4 3 2 19 19 H 1.08000 * 122.44759 * 180.02562 * 5 4 3 20 20 H 1.09006 * 109.46869 * 210.02426 * 7 6 5 21 21 H 1.08994 * 109.47554 * 330.02643 * 7 6 5 22 22 H 0.96997 * 120.00382 * 359.97438 * 8 7 6 23 23 H 0.97000 * 119.99673 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3609 -0.6902 -0.8723 5 6 4.7060 -0.5087 -0.6449 6 6 5.0043 0.3017 0.3760 7 6 6.4053 0.6470 0.8107 8 7 6.8587 1.8412 0.0934 9 6 8.1100 2.3461 0.3267 10 1 8.7625 1.8642 1.0397 11 6 8.5399 3.4774 -0.3533 12 7 7.7445 4.0650 -1.2219 13 14 10.2466 4.1665 -0.0346 14 1 10.9370 3.3295 0.9793 15 1 11.0275 4.1582 -1.2977 16 1 10.1321 5.5594 0.4675 17 16 3.5877 0.8914 1.1217 18 1 2.9711 -1.3191 -1.6590 19 1 5.4650 -0.9853 -1.2476 20 1 6.4153 0.8417 1.8832 21 1 7.0711 -0.1863 0.5864 22 1 6.2725 2.2743 -0.5467 23 1 8.0448 4.8557 -1.6968 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306316895.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:58 Heat of formation + Delta-G solvation = 52.355851 kcal Electronic energy + Delta-G solvation = -10409.808483 eV Core-core repulsion = 8349.475517 eV Total energy + Delta-G solvation = -2060.332967 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.31297 -37.64490 -36.37046 -33.55003 -30.96762 -27.79799 -25.44706 -23.66834 -21.81081 -19.66765 -18.74587 -17.30123 -16.69311 -15.88031 -15.41112 -15.06665 -14.95238 -14.62968 -14.37921 -13.71103 -13.47734 -13.07360 -12.94140 -12.73328 -12.62984 -12.03264 -11.85261 -11.78172 -10.97201 -9.70420 -9.49843 -9.02069 -7.93571 -5.24006 -0.51367 0.22308 0.94736 1.43952 1.52252 1.52918 1.62659 1.84341 2.27074 2.59496 2.89097 3.41341 3.87939 4.19712 4.34169 4.48846 4.80251 4.90966 5.02866 5.29915 5.45776 5.52787 6.26897 6.33898 7.34886 8.05179 8.29821 9.29732 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.071141 B = 0.006555 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.490780 B = 4270.572716 C = 4341.792343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.310 3.690 3 C -0.197 4.197 4 C -0.037 4.037 5 C -0.140 4.140 6 C -0.197 4.197 7 C 0.213 3.787 8 N -0.740 5.740 9 C -0.245 4.245 10 H 0.083 0.917 11 C -0.073 4.073 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.263 1.263 15 H -0.295 1.295 16 H -0.296 1.296 17 S 0.263 5.737 18 H 0.181 0.819 19 H 0.160 0.840 20 H 0.039 0.961 21 H 0.055 0.945 22 H 0.376 0.624 23 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 -9.768 3.139 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.005 4.005 3 C -0.318 4.318 4 C -0.074 4.074 5 C -0.171 4.171 6 C -0.318 4.318 7 C 0.086 3.914 8 N -0.384 5.384 9 C -0.376 4.376 10 H 0.101 0.899 11 C -0.265 4.265 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.187 1.187 15 H -0.222 1.222 16 H -0.223 1.223 17 S 0.532 5.468 18 H 0.198 0.802 19 H 0.177 0.823 20 H 0.057 0.943 21 H 0.072 0.928 22 H 0.208 0.792 23 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.662 -8.793 4.505 12.502 hybrid contribution 1.436 -0.105 -1.476 2.062 sum -6.225 -8.897 3.029 11.273 Atomic orbital electron populations 1.81280 1.12100 1.10263 1.09485 1.24363 0.90948 0.92466 0.92678 1.20440 0.88563 1.13599 1.09223 1.20943 0.91350 0.97261 0.97856 1.20156 0.96940 1.01422 0.98568 1.24523 1.01121 1.03372 1.02803 1.19322 0.87041 0.89921 0.95130 1.42572 1.15791 1.30324 1.49727 1.19684 0.92203 1.07140 1.18615 0.89948 1.25574 1.02100 0.99253 0.99604 1.69831 1.37814 1.23058 1.31187 0.85069 0.79675 0.77744 0.77215 1.18723 1.22179 1.22293 1.83218 0.92231 1.42640 1.28665 0.80219 0.82254 0.94340 0.92774 0.79207 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.41 18.54 19.00 0.35 -13.05 14 2 C 0.31 8.09 15.83 88.33 1.40 9.49 14 3 C -0.20 -4.72 6.32 23.14 0.15 -4.57 14 4 C -0.04 -0.78 10.24 21.75 0.22 -0.56 14 5 C -0.14 -3.44 10.00 21.10 0.21 -3.23 14 6 C -0.20 -5.75 5.64 24.66 0.14 -5.61 14 7 C 0.21 7.62 6.68 85.63 0.57 8.19 14 8 N -0.74 -35.22 5.59 -347.18 -1.94 -37.16 14 9 C -0.24 -12.92 9.99 84.03 0.84 -12.08 14 10 H 0.08 4.11 7.83 -2.91 -0.02 4.09 14 11 C -0.07 -4.03 5.50 84.86 0.47 -3.56 14 12 N -0.97 -57.67 13.06 21.65 0.28 -57.39 14 13 Si 0.97 44.43 29.55 68.60 2.03 46.46 14 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 14 15 H -0.29 -13.51 7.11 99.48 0.71 -12.80 14 16 H -0.30 -13.61 7.11 99.48 0.71 -12.90 14 17 S 0.26 6.85 23.01 -56.49 -1.30 5.55 14 18 H 0.18 2.61 8.06 -2.91 -0.02 2.59 14 19 H 0.16 3.56 8.06 -2.91 -0.02 3.53 14 20 H 0.04 1.35 8.14 -2.38 -0.02 1.33 14 21 H 0.05 1.85 8.14 -2.39 -0.02 1.83 14 22 H 0.38 19.35 7.66 -92.71 -0.71 18.64 14 23 H 0.25 14.53 8.31 -92.71 -0.77 13.76 14 Total: -1.00 -61.84 237.48 3.95 -57.89 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.53 Total: 9.63 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 4.00 Total: -11.92 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -1.31 Total: -107.60 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -1.30 Total: 5.55 kcal Total: -61.84 3.95 -57.89 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306316895.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.245 kcal (2) G-P(sol) polarization free energy of solvation -61.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds