Wall clock time and date at job start Mon Mar 30 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46840 * 2 1 4 4 C 1.50702 * 109.47168 * 239.99817 * 2 1 3 5 5 H 1.07997 * 119.99956 * 335.02670 * 4 2 1 6 6 C 1.37873 * 119.99656 * 155.02408 * 4 2 1 7 7 N 1.31514 * 120.00238 * 5.73711 * 6 4 2 8 8 Si 1.86804 * 119.99883 * 185.73765 * 6 4 2 9 9 H 1.48492 * 109.47156 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46809 * 300.00424 * 8 6 4 11 11 H 1.48505 * 109.46695 * 60.00039 * 8 6 4 12 12 N 1.46898 * 109.46932 * 119.99474 * 2 1 3 13 13 C 1.46898 * 111.00361 * 275.00321 * 12 2 1 14 14 H 1.09007 * 110.51452 * 323.66663 * 13 12 2 15 15 C 1.54833 * 110.58355 * 86.45515 * 13 12 2 16 16 C 1.56192 * 103.68104 * 118.54862 * 15 13 12 17 17 H 1.09001 * 116.28851 * 196.86265 * 16 15 13 18 18 C 1.53361 * 104.07846 * 67.52474 * 16 15 13 19 19 C 1.33834 * 107.34050 * 289.26166 * 18 16 15 20 20 C 1.53361 * 108.70623 * 0.51299 * 19 18 16 21 21 H 1.08999 * 116.98975 * 199.53902 * 20 19 18 22 22 C 1.57247 * 100.40291 * 323.67893 * 16 15 13 23 23 H 1.09000 * 109.46661 * 185.51114 * 1 2 3 24 24 H 1.08998 * 109.47207 * 305.51265 * 1 2 3 25 25 H 1.09000 * 109.47134 * 65.51138 * 1 2 3 26 26 H 0.97000 * 120.00057 * 5.32341 * 7 6 4 27 27 H 1.00900 * 111.00209 * 38.96064 * 12 2 1 28 28 H 1.08992 * 110.57808 * 237.10187 * 15 13 12 29 29 H 1.09002 * 110.58063 * 359.84858 * 15 13 12 30 30 H 1.08001 * 125.78670 * 109.90694 * 18 16 15 31 31 H 1.07994 * 125.50714 * 180.17036 * 19 18 16 32 32 H 1.09002 * 112.52853 * 173.05085 * 22 16 15 33 33 H 1.09002 * 112.52405 * 300.82521 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 1.4130 -1.4483 -1.7186 6 6 3.2827 -0.4184 -1.7329 7 7 4.0814 0.3950 -1.0771 8 14 3.8422 -1.1780 -3.3452 9 1 5.2145 -0.7086 -3.6636 10 1 3.8418 -2.6578 -3.2215 11 1 2.9149 -0.7718 -4.4317 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 1 2.3867 1.2187 2.0250 15 6 0.7163 0.2791 3.0735 16 6 1.0396 -0.2447 4.5091 17 1 0.1874 -0.5601 5.1112 18 6 1.9318 0.8471 5.1124 19 6 3.1129 0.7884 4.4858 20 6 3.0577 -0.3279 3.4357 21 1 4.0105 -0.7178 3.0776 22 6 2.1128 -1.3444 4.1751 23 1 -0.3633 -1.0229 0.0987 24 1 -0.3633 0.5969 0.8365 25 1 -0.3633 0.4260 -0.9352 26 1 3.8232 0.7285 -0.2036 27 1 1.4496 -1.4978 1.4101 28 1 0.3457 1.3033 3.1137 29 1 -0.0072 -0.3700 2.5802 30 1 1.6516 1.5253 5.9049 31 1 3.9609 1.4269 4.6848 32 1 2.5713 -1.7658 5.0698 33 1 1.7261 -2.1168 3.5103 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306327940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:28 Heat of formation + Delta-G solvation = 8.293301 kcal Electronic energy + Delta-G solvation = -13946.105110 eV Core-core repulsion = 11778.200677 eV Total energy + Delta-G solvation = -2167.904433 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.53853 -37.42597 -34.12487 -31.36105 -30.14235 -28.75039 -27.53462 -26.43677 -22.63304 -21.88186 -20.92661 -19.12405 -18.61356 -17.50364 -16.48038 -15.94745 -15.59446 -14.86332 -14.63478 -14.39778 -13.79602 -13.53599 -13.04424 -12.77528 -12.59692 -12.43181 -12.27493 -12.16278 -12.04566 -11.94230 -11.64222 -11.56593 -11.33218 -10.55620 -10.48138 -9.77150 -8.79723 -8.45845 -6.24020 1.25739 1.55233 1.63525 1.82104 2.62993 3.20031 3.60509 3.64400 3.69222 3.97844 4.15883 4.32377 4.35174 4.44567 4.46433 4.60501 4.66032 4.71938 4.74837 4.88476 4.94203 5.05796 5.10782 5.19172 5.25642 5.29910 5.31199 5.49459 6.02860 6.06861 6.29358 6.61450 6.85355 6.94527 7.63328 8.89862 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.049731 B = 0.008949 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.899111 B = 3128.167760 C = 3390.933244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.193 3.807 3 H 0.001 0.999 4 C -0.599 4.599 5 H 0.041 0.959 6 C -0.022 4.022 7 N -0.931 5.931 8 Si 1.112 2.888 9 H -0.288 1.288 10 H -0.275 1.275 11 H -0.272 1.272 12 N -0.677 5.677 13 C 0.087 3.913 14 H 0.036 0.964 15 C -0.142 4.142 16 C -0.070 4.070 17 H 0.120 0.880 18 C -0.162 4.162 19 C -0.179 4.179 20 C -0.074 4.074 21 H 0.077 0.923 22 C -0.111 4.111 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.262 0.738 27 H 0.326 0.674 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.152 0.848 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.890 -1.228 11.297 12.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.086 3.914 3 H 0.019 0.981 4 C -0.638 4.638 5 H 0.059 0.941 6 C -0.222 4.222 7 N -0.568 5.568 8 Si 0.935 3.065 9 H -0.214 1.214 10 H -0.200 1.200 11 H -0.197 1.197 12 N -0.307 5.307 13 C -0.024 4.024 14 H 0.054 0.946 15 C -0.181 4.181 16 C -0.088 4.088 17 H 0.138 0.862 18 C -0.180 4.180 19 C -0.198 4.198 20 C -0.093 4.093 21 H 0.095 0.905 22 C -0.148 4.148 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.170 0.830 31 H 0.147 0.853 32 H 0.102 0.898 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.013 -1.144 10.002 10.837 hybrid contribution -1.903 0.441 1.095 2.239 sum -5.916 -0.703 11.097 12.595 Atomic orbital electron populations 1.22357 0.98218 1.00417 1.00185 1.19244 0.90338 0.92973 0.88811 0.98099 1.22225 1.03632 1.26269 1.11630 0.94109 1.27118 0.93621 0.95260 1.06226 1.70805 1.39070 1.31934 1.14964 0.83013 0.75764 0.75772 0.71968 1.21357 1.20009 1.19742 1.61090 1.58005 1.08847 1.02798 1.22743 0.94382 0.94644 0.90591 0.94576 1.23462 0.97189 1.00836 0.96621 1.22936 0.97533 0.93853 0.94469 0.86213 1.24826 0.94254 0.99715 0.99206 1.24709 0.98757 0.99599 0.96686 1.22844 0.97628 0.95127 0.93689 0.90471 1.23982 0.95114 0.96409 0.99335 0.93230 0.93281 0.93851 0.92761 0.85533 0.92266 0.91365 0.82999 0.85264 0.89814 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.40 8.40 71.98 0.60 -5.79 16 2 C 0.19 9.84 2.06 44.17 0.09 9.93 16 3 H 0.00 0.05 6.46 -2.39 -0.02 0.04 16 4 C -0.60 -34.19 8.64 25.60 0.22 -33.97 16 5 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 6 C -0.02 -1.29 5.45 84.65 0.46 -0.82 16 7 N -0.93 -58.59 13.57 21.45 0.29 -58.30 16 8 Si 1.11 51.64 29.91 68.60 2.05 53.69 16 9 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 N -0.68 -30.88 6.01 -464.45 -2.79 -33.67 16 13 C 0.09 3.41 2.59 46.65 0.12 3.54 16 14 H 0.04 1.63 7.46 -2.38 -0.02 1.62 16 15 C -0.14 -4.39 4.63 32.33 0.15 -4.24 16 16 C -0.07 -1.74 5.20 -8.07 -0.04 -1.78 16 17 H 0.12 2.36 8.14 -2.39 -0.02 2.35 16 18 C -0.16 -3.97 10.30 25.55 0.26 -3.71 16 19 C -0.18 -5.20 10.18 25.55 0.26 -4.94 16 20 C -0.07 -2.55 4.95 -8.06 -0.04 -2.59 16 21 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 22 C -0.11 -3.10 6.66 33.59 0.22 -2.87 16 23 H 0.05 1.94 8.03 -2.39 -0.02 1.92 16 24 H 0.05 1.81 6.31 -2.39 -0.02 1.80 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.26 16.81 6.91 -92.71 -0.64 16.17 16 27 H 0.33 13.81 7.22 -89.69 -0.65 13.17 16 28 H 0.06 1.81 8.07 -2.39 -0.02 1.79 16 29 H 0.07 2.11 6.35 -2.39 -0.02 2.10 16 30 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 1.98 7.44 -2.39 -0.02 1.96 16 Total: -1.00 -64.71 260.62 2.43 -62.28 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.57 Total: 23.25 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 2.31 Total: -47.26 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -2.50 Total: -91.97 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.69 kcal Total: -64.71 2.43 -62.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306327940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.576 kcal (2) G-P(sol) polarization free energy of solvation -64.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds