Wall clock time and date at job start Mon Mar 30 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46848 * 140.06749 * 3 2 1 5 5 C 1.50698 * 109.47089 * 179.97438 * 4 3 2 6 6 C 1.34854 * 122.10208 * 124.99923 * 5 4 3 7 7 S 1.71043 * 109.23637 * 179.97438 * 6 5 4 8 8 C 1.76089 * 90.38852 * 0.02562 * 7 6 5 9 9 C 1.39910 * 125.55113 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99749 * 180.02562 * 9 8 7 11 11 C 1.40242 * 120.00346 * 0.02562 * 9 8 7 12 12 N 1.30700 * 120.00205 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00028 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47117 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47426 * 120.00316 * 13 11 9 16 16 H 1.48507 * 109.47037 * 240.00514 * 13 11 9 17 17 N 1.30462 * 122.10401 * 304.97461 * 5 4 3 18 18 H 1.09004 * 109.47429 * 20.06928 * 3 2 1 19 19 H 1.08998 * 109.47534 * 260.06914 * 3 2 1 20 20 H 1.09001 * 109.47128 * 60.00402 * 4 3 2 21 21 H 1.08993 * 109.47409 * 299.99961 * 4 3 2 22 22 H 1.07996 * 125.38425 * 0.02571 * 6 5 4 23 23 H 0.96992 * 120.00174 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1070 -0.9260 5 6 4.6244 1.1082 -0.9255 6 6 5.3415 1.0103 -2.0634 7 16 7.0088 1.0451 -1.6835 8 6 6.6278 1.1924 0.0293 9 6 7.5631 1.2824 1.0659 10 1 7.2284 1.3699 2.0891 11 6 8.9351 1.2591 0.7766 12 7 9.3402 1.1537 -0.4616 13 14 10.1838 1.3786 2.1608 14 1 9.4734 1.4882 3.4602 15 1 11.0366 0.1629 2.1645 16 1 11.0341 2.5792 1.9581 17 7 5.3174 1.2044 0.1757 18 1 2.9718 -0.9645 -0.3527 19 1 2.9713 0.1780 1.0122 20 1 2.7537 2.0721 -0.5733 21 1 2.7542 0.9297 -1.9382 22 1 4.9283 0.9244 -3.0575 23 1 10.2891 1.1379 -0.6618 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306414934.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:17 Heat of formation + Delta-G solvation = 15.194959 kcal Electronic energy + Delta-G solvation = -10594.940065 eV Core-core repulsion = 8532.995681 eV Total energy + Delta-G solvation = -2061.944384 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.72370 -37.75775 -36.02624 -34.00134 -30.78283 -28.32425 -25.94930 -23.53198 -19.76412 -19.54737 -18.30559 -17.45724 -16.86088 -16.00165 -15.34837 -14.96271 -14.61732 -14.07479 -14.02099 -13.62695 -13.42378 -13.16496 -12.91507 -12.48205 -12.28795 -11.96464 -11.84507 -11.29155 -11.16840 -9.76974 -9.67411 -9.01664 -8.83074 -6.63404 0.71810 1.45588 1.52934 1.63006 1.65230 1.74845 1.80610 2.12448 2.27425 2.36432 3.07954 3.25509 4.07502 4.35416 4.39704 4.65243 4.97288 5.03708 5.05240 5.18131 5.49150 5.81546 6.02328 6.47633 6.54807 6.60648 7.88115 8.07727 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.053653 B = 0.007968 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.750638 B = 3513.387116 C = 3968.473189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.245 3.755 3 C -0.006 4.006 4 C -0.027 4.027 5 C 0.104 3.896 6 C -0.477 4.477 7 S 0.070 5.930 8 C 0.176 3.824 9 C -0.397 4.397 10 H 0.105 0.895 11 C 0.020 3.980 12 N -0.798 5.798 13 Si 1.015 2.985 14 H -0.253 1.253 15 H -0.260 1.260 16 H -0.261 1.261 17 N -0.618 5.618 18 H 0.120 0.880 19 H 0.117 0.883 20 H 0.076 0.924 21 H 0.088 0.912 22 H 0.146 0.854 23 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -1.083 1.149 2.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.071 4.071 3 C -0.046 4.046 4 C -0.068 4.068 5 C -0.036 4.036 6 C -0.620 4.620 7 S 0.328 5.672 8 C -0.076 4.076 9 C -0.440 4.440 10 H 0.123 0.877 11 C -0.200 4.200 12 N -0.426 5.426 13 Si 0.834 3.166 14 H -0.177 1.177 15 H -0.184 1.184 16 H -0.186 1.186 17 N -0.342 5.342 18 H 0.138 0.862 19 H 0.135 0.865 20 H 0.095 0.905 21 H 0.107 0.893 22 H 0.164 0.836 23 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.511 -1.110 0.857 1.493 hybrid contribution -0.050 0.100 0.035 0.117 sum 0.460 -1.010 0.892 1.424 Atomic orbital electron populations 1.81186 1.14229 1.10879 1.11070 1.29515 0.95242 0.91195 0.91134 1.19189 0.79197 1.02187 1.04017 1.19956 0.88133 0.98555 1.00165 1.20025 0.96829 0.99017 0.87711 1.25985 1.01501 1.32070 1.02469 1.84149 1.02090 1.73974 1.06971 1.24365 0.92191 0.96234 0.94806 1.19390 0.90040 1.39859 0.94688 0.87734 1.27165 1.01238 0.91519 1.00119 1.68868 1.20326 1.32106 1.21344 0.84611 0.75954 0.79288 0.76766 1.17661 1.18400 1.18555 1.67280 1.03567 1.33913 1.29391 0.86242 0.86522 0.90544 0.89347 0.83610 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.29 18.54 20.01 0.37 -15.92 14 2 C 0.25 6.98 15.43 89.44 1.38 8.36 14 3 C -0.01 -0.15 5.59 28.79 0.16 0.01 14 4 C -0.03 -0.86 5.64 29.85 0.17 -0.69 14 5 C 0.10 4.51 6.05 41.98 0.25 4.77 14 6 C -0.48 -21.50 10.78 67.04 0.72 -20.78 14 7 S 0.07 3.45 20.19 -56.49 -1.14 2.31 14 8 C 0.18 9.13 7.14 85.09 0.61 9.74 14 9 C -0.40 -19.56 9.45 23.16 0.22 -19.34 14 10 H 0.10 4.96 7.85 -2.91 -0.02 4.94 14 11 C 0.02 0.89 5.50 85.35 0.47 1.35 14 12 N -0.80 -36.47 10.67 21.88 0.23 -36.24 14 13 Si 1.02 32.84 29.56 68.60 2.03 34.87 14 14 H -0.25 -8.05 7.11 99.48 0.71 -7.34 14 15 H -0.26 -7.99 7.11 99.48 0.71 -7.28 14 16 H -0.26 -8.09 7.11 99.48 0.71 -7.38 14 17 N -0.62 -30.37 10.44 -183.44 -1.91 -32.29 14 18 H 0.12 2.97 8.14 -2.39 -0.02 2.95 14 19 H 0.12 3.30 8.05 -2.39 -0.02 3.28 14 20 H 0.08 2.38 8.14 -2.39 -0.02 2.36 14 21 H 0.09 2.48 8.01 -2.39 -0.02 2.46 14 22 H 0.15 5.89 8.06 -2.91 -0.02 5.87 14 23 H 0.31 12.43 8.29 -92.71 -0.77 11.66 14 Total: -1.00 -57.12 232.84 4.79 -52.33 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.23 Total: 11.52 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 3.98 Total: -16.58 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -1.31 Total: -84.45 kcal Atomic # 14 Polarization: 32.84 SS G_CDS: 2.03 Total: 34.87 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.14 Total: 2.31 kcal Total: -57.12 4.79 -52.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306414934.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.527 kcal (2) G-P(sol) polarization free energy of solvation -57.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds