Wall clock time and date at job start Mon Mar 30 2020 02:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.34428 * 126.81964 * 274.68503 * 12 2 1 14 14 N 1.30833 * 108.07742 * 179.89265 * 13 12 2 15 15 C 1.33242 * 109.82617 * 0.38363 * 14 13 12 16 16 C 1.50700 * 125.52506 * 179.73191 * 15 14 13 17 17 C 1.53005 * 117.49846 * 8.65209 * 16 15 14 18 18 C 1.52995 * 60.00010 * 252.51454 * 17 16 15 19 19 N 1.30707 * 108.94559 * 359.75927 * 15 14 13 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 23 23 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 24 24 H 1.08002 * 125.96582 * 0.03595 * 13 12 2 25 25 H 1.08997 * 115.55353 * 154.36399 * 16 15 14 26 26 H 1.09000 * 117.49843 * 0.02562 * 17 16 15 27 27 H 1.09007 * 117.49498 * 145.02136 * 17 16 15 28 28 H 1.08998 * 117.50324 * 252.50656 * 18 17 16 29 29 H 1.09005 * 117.51826 * 107.48365 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0184 -0.6905 -1.1962 13 6 2.2041 -2.0137 -1.3433 14 7 2.6473 -2.2293 -2.5552 15 6 2.7647 -1.0725 -3.2059 16 6 3.2500 -0.9104 -4.6234 17 6 3.4489 -2.1815 -5.4517 18 6 4.6632 -1.3997 -4.9465 19 7 2.3914 -0.1010 -2.4151 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.7094 1.1615 3.4845 24 1 2.0176 -2.7677 -0.5928 25 1 2.8941 -0.0211 -5.1434 26 1 3.2284 -3.1348 -4.9714 27 1 3.2237 -2.1284 -6.5169 28 1 5.2370 -0.8324 -5.6793 29 1 5.2421 -1.8384 -4.1337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306496726.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:25 Heat of formation + Delta-G solvation = 102.992826 kcal Electronic energy + Delta-G solvation = -13118.881502 eV Core-core repulsion = 10851.543205 eV Total energy + Delta-G solvation = -2267.338297 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.22682 -36.88422 -34.84086 -31.99192 -30.45530 -28.71493 -25.54480 -23.59038 -22.54843 -22.11214 -20.18643 -19.25575 -16.69547 -16.02739 -15.52220 -14.65721 -14.34046 -14.07735 -13.68080 -13.00107 -12.05882 -11.84835 -11.40634 -11.37761 -11.23879 -11.17670 -11.01970 -10.61514 -10.47010 -10.38115 -10.25597 -9.42974 -9.16096 -8.88536 -8.74274 -8.36754 -6.39223 -4.50796 2.54119 3.13577 3.19890 3.21885 3.41476 3.47598 4.17536 4.28269 4.66113 4.94822 5.03534 5.13508 5.30102 5.73605 5.80058 5.88717 6.05706 6.32138 6.40043 6.50953 6.66218 6.66953 6.90222 7.23836 7.31323 7.46676 7.61288 7.74789 7.95379 8.53566 8.99067 9.18075 10.67137 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.058803 B = 0.007623 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.053937 B = 3672.283600 C = 3903.676121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.274 3.726 3 H 0.062 0.938 4 C -0.544 4.544 5 H 0.069 0.931 6 C 0.072 3.928 7 N -0.882 5.882 8 Si 0.911 3.089 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.334 5.334 13 C 0.257 3.743 14 N -0.568 5.568 15 C 0.222 3.778 16 C -0.063 4.063 17 C -0.158 4.158 18 C -0.163 4.163 19 N -0.331 5.331 20 H 0.036 0.964 21 H 0.104 0.896 22 H 0.020 0.980 23 H 0.270 0.730 24 H 0.211 0.789 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 -3.891 -7.894 9.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.175 3.825 3 H 0.080 0.920 4 C -0.583 4.583 5 H 0.087 0.913 6 C -0.132 4.132 7 N -0.518 5.518 8 Si 0.738 3.262 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.194 1.194 12 N -0.122 5.122 13 C -0.039 4.039 14 N -0.298 5.298 15 C -0.060 4.060 16 C -0.083 4.083 17 C -0.196 4.196 18 C -0.202 4.202 19 N -0.161 5.161 20 H 0.055 0.945 21 H 0.122 0.878 22 H 0.039 0.961 23 H 0.080 0.920 24 H 0.227 0.773 25 H 0.137 0.863 26 H 0.125 0.875 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.264 -3.250 -7.952 8.884 hybrid contribution 0.124 -0.370 1.299 1.357 sum 2.388 -3.620 -6.653 7.942 Atomic orbital electron populations 1.22149 0.96265 1.00435 1.01775 1.19368 0.91995 0.94294 0.76826 0.91996 1.21190 1.33649 1.14063 0.89368 0.91294 1.24875 0.94308 0.94854 0.99198 1.69868 1.35147 1.22159 1.24646 0.86274 0.78692 0.79959 0.81315 1.20288 1.20769 1.19448 1.51227 1.44023 1.06013 1.10925 1.25656 0.95954 0.87725 0.94572 1.70212 1.25773 1.28512 1.05337 1.22904 1.00261 0.86918 0.95911 1.19872 1.00153 0.99618 0.88685 1.22940 1.01557 0.96306 0.98806 1.22946 0.90380 1.03591 1.03283 1.77807 1.22869 1.22357 0.93071 0.94494 0.87790 0.96115 0.92044 0.77301 0.86267 0.87528 0.88704 0.88516 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.29 37.16 0.35 -3.09 15 2 C 0.27 6.81 3.35 -69.08 -0.23 6.57 15 3 H 0.06 1.69 8.14 -51.93 -0.42 1.27 15 4 C -0.54 -13.82 8.32 -34.44 -0.29 -14.10 15 5 H 0.07 1.71 6.76 -52.48 -0.35 1.35 15 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 15 7 N -0.88 -23.14 11.32 55.43 0.63 -22.52 15 8 Si 0.91 19.72 29.54 -169.99 -5.02 14.70 15 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 11 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 12 N -0.33 -7.83 3.54 -57.24 -0.20 -8.03 15 13 C 0.26 5.49 11.50 -90.65 -1.04 4.44 15 14 N -0.57 -11.90 10.75 -11.98 -0.13 -12.02 15 15 C 0.22 4.57 7.67 -156.86 -1.20 3.37 15 16 C -0.06 -0.99 6.33 -91.77 -0.58 -1.57 15 17 C -0.16 -2.06 10.14 -26.73 -0.27 -2.33 15 18 C -0.16 -2.17 10.23 -26.73 -0.27 -2.44 15 19 N -0.33 -7.68 12.70 32.42 0.41 -7.27 15 20 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.10 2.57 6.07 -51.93 -0.32 2.25 15 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 23 H 0.27 6.70 8.31 -40.82 -0.34 6.36 15 24 H 0.21 3.88 7.59 -52.49 -0.40 3.48 15 25 H 0.12 1.71 8.14 -51.93 -0.42 1.29 15 26 H 0.11 1.53 7.88 -51.93 -0.41 1.12 15 27 H 0.09 0.98 8.14 -51.92 -0.42 0.56 15 28 H 0.10 1.03 8.14 -51.93 -0.42 0.61 15 29 H 0.10 1.39 8.14 -51.93 -0.42 0.97 15 LS Contribution 254.91 15.07 3.84 3.84 Total: -1.00 -27.99 254.91 -7.68 -35.67 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -3.57 Total: 3.05 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -3.64 Total: -7.42 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.71 Total: -49.84 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.99 -7.68 -35.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306496726.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.661 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds