Wall clock time and date at job start Mon Mar 30 2020 02:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.34428 * 126.81964 * 274.68503 * 12 2 1 14 14 N 1.30833 * 108.07742 * 179.89265 * 13 12 2 15 15 C 1.33242 * 109.82617 * 0.38363 * 14 13 12 16 16 C 1.50700 * 125.52506 * 179.73191 * 15 14 13 17 17 C 1.53005 * 117.49846 * 8.65209 * 16 15 14 18 18 C 1.52995 * 60.00010 * 252.51454 * 17 16 15 19 19 N 1.30707 * 108.94559 * 359.75927 * 15 14 13 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 23 23 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 24 24 H 1.08002 * 125.96582 * 0.03595 * 13 12 2 25 25 H 1.08997 * 115.55353 * 154.36399 * 16 15 14 26 26 H 1.09000 * 117.49843 * 0.02562 * 17 16 15 27 27 H 1.09007 * 117.49498 * 145.02136 * 17 16 15 28 28 H 1.08998 * 117.50324 * 252.50656 * 18 17 16 29 29 H 1.09005 * 117.51826 * 107.48365 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0184 -0.6905 -1.1962 13 6 2.2041 -2.0137 -1.3433 14 7 2.6473 -2.2293 -2.5552 15 6 2.7647 -1.0725 -3.2059 16 6 3.2500 -0.9104 -4.6234 17 6 3.4489 -2.1815 -5.4517 18 6 4.6632 -1.3997 -4.9465 19 7 2.3914 -0.1010 -2.4151 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.7094 1.1615 3.4845 24 1 2.0176 -2.7677 -0.5928 25 1 2.8941 -0.0211 -5.1434 26 1 3.2284 -3.1348 -4.9714 27 1 3.2237 -2.1284 -6.5169 28 1 5.2370 -0.8324 -5.6793 29 1 5.2421 -1.8384 -4.1337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306496726.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:25 Heat of formation + Delta-G solvation = 88.328131 kcal Electronic energy + Delta-G solvation = -13119.517411 eV Core-core repulsion = 10851.543205 eV Total energy + Delta-G solvation = -2267.974206 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.89981 -38.11970 -36.64836 -33.85515 -32.14687 -30.50116 -27.49572 -25.12235 -24.16598 -23.17617 -21.99299 -20.76268 -18.49960 -17.79547 -17.00216 -16.37295 -16.00530 -15.39116 -15.25818 -14.82181 -13.89442 -13.32149 -13.14042 -13.04939 -12.92067 -12.78646 -12.41898 -12.30087 -12.17422 -11.76834 -11.40883 -11.31340 -10.85687 -10.70455 -10.56001 -10.03368 -8.32674 -6.51774 0.86779 1.43600 1.44332 1.54508 1.70520 1.93163 2.36541 2.99732 3.08258 3.25678 3.69896 3.96882 4.18425 4.30615 4.31224 4.66590 4.73090 4.76165 4.82700 4.95649 5.12734 5.21857 5.37160 5.39885 5.52213 5.64364 5.73406 5.85705 6.12499 6.58841 7.20539 7.31098 8.74096 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.058803 B = 0.007623 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.053937 B = 3672.283600 C = 3903.676121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.281 3.719 3 H 0.025 0.975 4 C -0.558 4.558 5 H 0.073 0.927 6 C 0.030 3.970 7 N -0.909 5.909 8 Si 0.976 3.024 9 H -0.279 1.279 10 H -0.278 1.278 11 H -0.260 1.260 12 N -0.353 5.353 13 C 0.257 3.743 14 N -0.571 5.571 15 C 0.227 3.773 16 C -0.096 4.096 17 C -0.137 4.137 18 C -0.149 4.149 19 N -0.371 5.371 20 H 0.045 0.955 21 H 0.089 0.911 22 H 0.022 0.978 23 H 0.273 0.727 24 H 0.233 0.767 25 H 0.133 0.867 26 H 0.092 0.908 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 -5.179 -8.655 10.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.181 3.819 3 H 0.043 0.957 4 C -0.596 4.596 5 H 0.091 0.909 6 C -0.172 4.172 7 N -0.545 5.545 8 Si 0.800 3.200 9 H -0.205 1.205 10 H -0.203 1.203 11 H -0.184 1.184 12 N -0.141 5.141 13 C -0.039 4.039 14 N -0.301 5.301 15 C -0.055 4.055 16 C -0.117 4.117 17 C -0.175 4.175 18 C -0.187 4.187 19 N -0.201 5.201 20 H 0.064 0.936 21 H 0.107 0.893 22 H 0.041 0.959 23 H 0.082 0.918 24 H 0.249 0.751 25 H 0.151 0.849 26 H 0.110 0.890 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.965 -4.544 -8.733 10.281 hybrid contribution -0.062 0.028 1.449 1.450 sum 2.903 -4.516 -7.285 9.049 Atomic orbital electron populations 1.21965 0.95455 1.00689 1.01087 1.19097 0.92571 0.92579 0.77676 0.95737 1.21407 1.34018 1.14335 0.89842 0.90871 1.25684 0.94266 0.95399 1.01875 1.69974 1.35872 1.23250 1.25444 0.85272 0.77857 0.79228 0.77669 1.20465 1.20283 1.18367 1.51087 1.45431 1.06666 1.10878 1.26216 0.94992 0.87411 0.95259 1.70300 1.26004 1.28570 1.05241 1.23839 0.98168 0.86124 0.97352 1.20197 1.02783 1.02042 0.86696 1.23036 1.00323 0.94121 1.00047 1.23044 0.89432 1.03034 1.03201 1.77782 1.24940 1.23835 0.93523 0.93623 0.89257 0.95874 0.91804 0.75092 0.84936 0.88950 0.85206 0.85223 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 9.29 71.98 0.67 -5.63 15 2 C 0.28 14.25 3.35 44.25 0.15 14.40 15 3 H 0.02 1.41 8.14 -2.39 -0.02 1.39 15 4 C -0.56 -28.39 8.32 25.60 0.21 -28.18 15 5 H 0.07 3.58 6.76 -2.91 -0.02 3.56 15 6 C 0.03 1.51 5.30 84.65 0.45 1.96 15 7 N -0.91 -48.09 11.32 21.45 0.24 -47.85 15 8 Si 0.98 39.84 29.54 68.60 2.03 41.87 15 9 H -0.28 -11.41 7.11 99.48 0.71 -10.71 15 10 H -0.28 -11.06 7.11 99.48 0.71 -10.36 15 11 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 12 N -0.35 -16.72 3.54 -335.01 -1.19 -17.91 15 13 C 0.26 10.85 11.50 180.36 2.07 12.92 15 14 N -0.57 -23.47 10.75 -191.80 -2.06 -25.53 15 15 C 0.23 9.23 7.67 138.63 1.06 10.29 15 16 C -0.10 -2.88 6.33 -11.54 -0.07 -2.96 15 17 C -0.14 -3.17 10.14 30.59 0.31 -2.86 15 18 C -0.15 -3.53 10.23 30.59 0.31 -3.22 15 19 N -0.37 -17.42 12.70 -51.34 -0.65 -18.08 15 20 H 0.04 2.02 8.14 -2.39 -0.02 2.00 15 21 H 0.09 4.50 6.07 -2.39 -0.01 4.48 15 22 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 23 H 0.27 13.59 8.31 -92.70 -0.77 12.82 15 24 H 0.23 8.33 7.59 -2.91 -0.02 8.31 15 25 H 0.13 3.55 8.14 -2.39 -0.02 3.53 15 26 H 0.09 2.43 7.88 -2.39 -0.02 2.41 15 27 H 0.13 2.11 8.14 -2.38 -0.02 2.09 15 28 H 0.13 2.23 8.14 -2.39 -0.02 2.21 15 29 H 0.08 2.17 8.14 -2.38 -0.02 2.15 15 Total: -1.00 -59.95 254.91 4.67 -55.28 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.14 Total: 15.49 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.17 Total: -3.27 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -3.66 Total: -109.37 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -59.95 4.67 -55.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306496726.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.605 kcal (2) G-P(sol) polarization free energy of solvation -59.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds