Wall clock time and date at job start Mon Mar 30 2020 02:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47278 * 146.20921 * 3 2 1 5 5 C 1.36941 * 120.00122 * 264.14612 * 4 3 2 6 6 H 1.07997 * 120.00570 * 196.56137 * 5 4 3 7 7 C 1.38813 * 119.99480 * 16.56153 * 5 4 3 8 8 N 1.31622 * 120.00431 * 22.35036 * 7 5 4 9 9 Si 1.86797 * 119.99974 * 202.34464 * 7 5 4 10 10 H 1.48503 * 109.47097 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47565 * 120.00162 * 9 7 5 12 12 H 1.48505 * 109.47440 * 240.00333 * 9 7 5 13 13 C 1.46499 * 120.00287 * 84.14633 * 4 3 2 14 14 H 1.08995 * 110.05560 * 1.41452 * 13 4 3 15 15 C 1.54270 * 110.03558 * 122.83705 * 13 4 3 16 16 C 1.54879 * 104.19885 * 142.89310 * 15 13 4 17 17 C 1.54893 * 102.75210 * 322.06047 * 16 15 13 18 18 H 1.08998 * 110.48375 * 279.26418 * 17 16 15 19 19 C 1.52995 * 110.48969 * 156.61879 * 17 16 15 20 20 C 1.53880 * 110.03263 * 240.00312 * 13 4 3 21 21 H 4.40640 * 5.51328 * 180.02562 * 4 1 2 22 22 H 1.09000 * 109.47110 * 26.20610 * 3 2 1 23 23 H 1.09003 * 109.47279 * 266.20912 * 3 2 1 24 24 H 0.96996 * 120.00538 * 179.97438 * 8 7 5 25 25 H 1.08999 * 110.48502 * 261.57326 * 15 13 4 26 26 H 1.09005 * 110.48023 * 24.21485 * 15 13 4 27 27 H 1.09006 * 110.75504 * 80.37250 * 16 15 13 28 28 H 1.08994 * 110.75921 * 203.74135 * 16 15 13 29 29 H 1.09000 * 109.47390 * 305.22697 * 19 17 16 30 30 H 1.09004 * 109.47160 * 65.22392 * 19 17 16 31 31 H 1.08999 * 109.47536 * 185.22091 * 19 17 16 32 32 H 1.09000 * 110.03311 * 359.97438 * 20 13 4 33 33 H 1.08999 * 110.03493 * 121.43043 * 20 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1487 -0.7681 5 6 3.4762 0.9957 -2.0852 6 1 4.0766 1.7462 -2.5779 7 6 3.0515 -0.1241 -2.7871 8 7 1.9996 -0.7994 -2.3749 9 14 3.9727 -0.6725 -4.3167 10 1 5.1098 0.2494 -4.5669 11 1 4.4872 -2.0511 -4.1172 12 1 3.0533 -0.6513 -5.4827 13 6 3.2555 2.4605 -0.1274 14 1 2.9657 2.3926 0.9212 15 6 4.7061 2.9726 -0.2427 16 6 4.5540 4.4976 -0.4663 17 6 3.3105 4.5860 -1.3856 18 1 3.5863 4.3845 -2.4207 19 6 2.6512 5.9612 -1.2637 20 6 2.3681 3.4864 -0.8540 21 1 -1.0502 -0.0002 0.0004 22 1 3.0097 -0.9212 -0.4538 23 1 3.0093 0.0688 1.0254 24 1 1.7026 -1.5816 -2.8655 25 1 5.2548 2.7749 0.6781 26 1 5.2072 2.5104 -1.0933 27 1 4.3731 5.0104 0.4785 28 1 5.4333 4.9045 -0.9656 29 1 2.4249 6.1643 -0.2170 30 1 3.3302 6.7247 -1.6434 31 1 1.7286 5.9746 -1.8441 32 1 1.8473 3.0084 -1.6837 33 1 1.6478 3.9164 -0.1581 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306656761.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:42 Heat of formation + Delta-G solvation = 64.803863 kcal Electronic energy + Delta-G solvation = -13936.160214 eV Core-core repulsion = 11770.706263 eV Total energy + Delta-G solvation = -2165.453951 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.12782 -35.04256 -31.48881 -31.29870 -29.44823 -27.44717 -25.88570 -24.45892 -22.22289 -19.70283 -18.87327 -17.29628 -16.04777 -15.47297 -14.53123 -14.20190 -13.51774 -13.11716 -12.96491 -12.93081 -12.38477 -11.70586 -11.51665 -11.14736 -10.81869 -10.73255 -10.52050 -10.36093 -10.21508 -10.04582 -10.02319 -9.73620 -9.57885 -8.83469 -8.69940 -8.33012 -6.88149 -5.72675 -3.10906 3.39453 3.48425 3.49766 4.22611 4.44208 4.59158 5.20483 5.32907 5.34845 5.45715 5.66690 5.85443 5.88650 5.98643 6.09206 6.17249 6.24703 6.37973 6.44295 6.50820 6.56371 6.65452 6.78058 6.82583 7.03768 7.13390 7.28037 7.31680 7.50356 7.85055 8.37825 9.18585 9.25803 9.87507 10.33662 11.31569 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.025733 B = 0.012903 C = 0.010234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.832286 B = 2169.487553 C = 2735.209360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.092 4.092 3 C 0.266 3.734 4 N -0.583 5.583 5 C -0.251 4.251 6 H 0.077 0.923 7 C -0.001 4.001 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.294 1.294 13 C 0.172 3.828 14 H 0.051 0.949 15 C -0.135 4.135 16 C -0.117 4.117 17 C -0.095 4.095 18 H 0.070 0.930 19 C -0.140 4.140 20 C -0.128 4.128 21 H 0.189 0.811 22 H 0.097 0.903 23 H 0.034 0.966 24 H 0.252 0.748 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 7.327 4.265 8.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.095 4.095 3 C 0.140 3.860 4 N -0.302 5.302 5 C -0.380 4.380 6 H 0.094 0.906 7 C -0.199 4.199 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.221 1.221 13 C 0.064 3.936 14 H 0.070 0.930 15 C -0.174 4.174 16 C -0.155 4.155 17 C -0.114 4.114 18 H 0.088 0.912 19 C -0.198 4.198 20 C -0.168 4.168 21 H 0.206 0.794 22 H 0.114 0.886 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.577 7.168 4.181 8.689 hybrid contribution -0.083 -0.358 -1.083 1.143 sum 2.494 6.810 3.098 7.887 Atomic orbital electron populations 1.24170 0.95332 1.05223 1.07883 1.24407 0.95375 0.95952 0.93805 1.17851 0.82759 0.93066 0.92314 1.44288 1.74467 1.02665 1.08753 1.19129 1.25937 1.05880 0.87008 0.90553 1.24869 0.96702 1.00334 0.98001 1.70148 1.21906 1.20495 1.40908 0.86339 0.79641 0.78522 0.83024 1.20383 1.21678 1.22085 1.20986 0.92474 0.85603 0.94537 0.93021 1.22818 0.99099 0.94093 1.01403 1.22497 0.97232 0.97158 0.98655 1.21903 0.95653 0.94304 0.99521 0.91185 1.21797 1.00049 0.96909 1.01005 1.22695 0.97716 0.95712 1.00662 0.79405 0.88558 0.94772 0.93758 0.93187 0.90330 0.92492 0.92809 0.93183 0.93564 0.93182 0.90453 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.18 19.25 29.55 0.57 -6.61 16 2 C -0.09 -2.29 11.62 -37.12 -0.43 -2.72 16 3 C 0.27 6.36 5.36 -6.83 -0.04 6.33 16 4 N -0.58 -14.06 2.43 -167.70 -0.41 -14.47 16 5 C -0.25 -6.58 8.02 -15.06 -0.12 -6.70 16 6 H 0.08 1.99 6.96 -52.49 -0.37 1.63 16 7 C 0.00 -0.02 4.85 -17.43 -0.08 -0.10 16 8 N -0.89 -25.38 9.50 55.49 0.53 -24.85 16 9 Si 0.89 21.55 29.61 -169.99 -5.03 16.52 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 C 0.17 3.51 3.41 -66.81 -0.23 3.28 16 14 H 0.05 1.02 7.90 -51.93 -0.41 0.61 16 15 C -0.13 -2.43 6.37 -25.08 -0.16 -2.59 16 16 C -0.12 -1.82 6.33 -24.74 -0.16 -1.98 16 17 C -0.10 -1.59 3.46 -88.96 -0.31 -1.90 16 18 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 19 C -0.14 -1.96 9.12 37.16 0.34 -1.62 16 20 C -0.13 -2.53 5.85 -25.61 -0.15 -2.68 16 21 H 0.19 3.71 7.80 -54.08 -0.42 3.29 16 22 H 0.10 2.51 6.40 -51.93 -0.33 2.17 16 23 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 24 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.57 6.49 -51.93 -0.34 1.24 16 27 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.66 8.12 -51.93 -0.42 0.23 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.82 7.37 -51.93 -0.38 1.44 16 33 H 0.04 0.81 7.84 -51.93 -0.41 0.41 16 LS Contribution 270.49 15.07 4.08 4.08 Total: -1.00 -28.44 270.49 -6.77 -35.20 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.16 Total: 0.80 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -0.77 Total: -17.28 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.12 Total: -39.32 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.44 -6.77 -35.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306656761.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.008 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds