Wall clock time and date at job start Mon Mar 30 2020 02:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47167 * 273.54201 * 3 2 1 5 5 C 1.46851 * 110.99898 * 45.79106 * 4 3 2 6 6 C 1.53039 * 109.52490 * 185.83779 * 5 4 3 7 7 C 1.53116 * 109.27694 * 300.82213 * 6 5 4 8 8 C 1.53002 * 109.57479 * 177.58614 * 7 6 5 9 9 C 1.50702 * 109.46629 * 65.28624 * 8 7 6 10 10 H 1.08002 * 120.00204 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99548 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00593 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99672 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47287 * 60.00621 * 13 11 9 15 15 H 1.48496 * 109.47092 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47283 * 300.00224 * 13 11 9 17 17 C 1.53121 * 109.16460 * 57.65281 * 7 6 5 18 18 C 1.46842 * 111.00041 * 169.99731 * 4 3 2 19 19 H 4.40889 * 5.52257 * 180.02562 * 4 1 2 20 20 H 1.09002 * 109.47120 * 153.54271 * 3 2 1 21 21 H 1.09001 * 109.46952 * 33.54408 * 3 2 1 22 22 H 1.08996 * 109.46471 * 305.85679 * 5 4 3 23 23 H 1.09004 * 109.45929 * 65.82278 * 5 4 3 24 24 H 1.08992 * 109.50519 * 180.88071 * 6 5 4 25 25 H 1.09003 * 109.50071 * 60.76201 * 6 5 4 26 26 H 1.08999 * 109.52546 * 297.75036 * 7 6 5 27 27 H 1.08996 * 109.47250 * 185.28218 * 8 7 6 28 28 H 1.08996 * 109.47208 * 305.28642 * 8 7 6 29 29 H 0.96994 * 120.00371 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.50961 * 182.40006 * 17 7 6 31 31 H 1.09008 * 109.53352 * 62.30425 * 17 7 6 32 32 H 1.08996 * 109.46789 * 294.18136 * 18 4 3 33 33 H 1.09007 * 109.45854 * 54.15867 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.0847 1.3823 5 6 2.4103 -1.1162 2.1349 6 6 2.8429 -1.0780 3.6023 7 6 4.3520 -1.3215 3.6910 8 6 4.8020 -1.2250 5.1502 9 6 4.1777 -2.3442 5.9432 10 1 3.5256 -3.0534 5.4552 11 6 4.4399 -2.4631 7.2916 12 7 5.2343 -1.5998 7.8858 13 14 3.6655 -3.8499 8.2748 14 1 4.0920 -5.1553 7.7100 15 1 4.1022 -3.7564 9.6910 16 1 2.1861 -3.7399 8.2053 17 6 5.0817 -0.2627 2.8596 18 6 4.5841 -0.3245 1.4136 19 1 -1.0500 -0.0002 0.0001 20 1 3.0089 0.9209 -0.4579 21 1 3.0097 -0.8557 -0.5679 22 1 1.3387 -0.9290 2.0672 23 1 2.6348 -2.0970 1.7155 24 1 2.3159 -1.8540 4.1574 25 1 2.6062 -0.1020 4.0262 26 1 4.5845 -2.3131 3.3028 27 1 5.8878 -1.3051 5.2016 28 1 4.4882 -0.2670 5.5646 29 1 5.4184 -1.6832 8.8344 30 1 6.1540 -0.4561 2.8841 31 1 4.8808 0.7264 3.2716 32 1 4.7983 -1.3090 0.9977 33 1 5.0913 0.4378 0.8223 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306971200.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:18 Heat of formation + Delta-G solvation = 38.993501 kcal Electronic energy + Delta-G solvation = -13363.495286 eV Core-core repulsion = 11196.922114 eV Total energy + Delta-G solvation = -2166.573173 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.83886 -35.09850 -32.97408 -31.79811 -30.29473 -28.46817 -25.80354 -23.32460 -22.59599 -20.66600 -18.90132 -18.05373 -16.24202 -15.70978 -14.90051 -14.65571 -14.45268 -13.60145 -13.32438 -12.99081 -12.58085 -12.34178 -11.86734 -11.62040 -11.13945 -10.82642 -10.66760 -10.60596 -10.42746 -10.26465 -10.17176 -9.91053 -9.49025 -9.02197 -8.85543 -8.29657 -8.10607 -5.94586 -3.96029 2.71985 2.83876 3.35675 3.40196 3.42469 4.22449 4.39543 4.49768 5.27047 5.33371 5.40238 5.42019 5.50670 5.69440 5.75532 5.86621 5.96102 6.00731 6.15818 6.27035 6.46099 6.60098 6.69624 7.00371 7.12276 7.22498 7.29467 7.37292 7.60730 7.73368 7.90446 8.06263 8.49442 9.10321 9.67214 11.16760 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.047030 B = 0.007034 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.223723 B = 3979.594189 C = 4415.121359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.159 3.841 4 N -0.533 5.533 5 C 0.053 3.947 6 C -0.099 4.099 7 C -0.082 4.082 8 C 0.028 3.972 9 C -0.515 4.515 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.889 3.111 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.112 4.112 18 C 0.059 3.941 19 H 0.217 0.783 20 H 0.095 0.905 21 H 0.053 0.947 22 H 0.070 0.930 23 H 0.027 0.973 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.014 0.986 28 H 0.017 0.983 29 H 0.260 0.740 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 2.429 -14.003 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.175 4.175 3 C 0.032 3.968 4 N -0.259 5.259 5 C -0.074 4.074 6 C -0.137 4.137 7 C -0.101 4.101 8 C -0.009 4.009 9 C -0.553 4.553 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.717 3.283 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.150 4.150 18 C -0.069 4.069 19 H 0.234 0.766 20 H 0.113 0.887 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.679 2.919 -13.596 14.672 hybrid contribution -0.452 -1.538 0.237 1.620 sum -5.131 1.381 -13.359 14.377 Atomic orbital electron populations 1.24863 0.95877 1.01589 1.00160 1.22900 0.94340 0.99966 1.00327 1.19118 0.84673 1.01711 0.91284 1.62116 1.04633 1.48659 1.10454 1.22286 0.97871 0.91558 0.95729 1.21550 0.97154 1.02431 0.92563 1.21249 0.93807 0.96390 0.98645 1.19112 0.96248 0.97084 0.88434 1.21227 1.28361 1.12189 0.93561 0.92784 1.25013 0.95348 0.96119 0.97971 1.69951 1.36745 1.36149 1.10755 0.86715 0.79715 0.82785 0.79115 1.20358 1.21352 1.20309 1.21696 0.99258 1.00980 0.93039 1.22143 0.86765 0.99019 0.98940 0.76649 0.88717 0.92889 0.91183 0.95493 0.90894 0.91858 0.93034 0.96735 0.96487 0.93048 0.91927 0.91491 0.95121 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.41 19.01 29.55 0.56 -1.85 16 2 C -0.17 -2.31 11.51 -37.12 -0.43 -2.74 16 3 C 0.16 1.99 5.77 -6.61 -0.04 1.96 16 4 N -0.53 -8.15 4.79 -238.17 -1.14 -9.29 16 5 C 0.05 0.88 5.08 -3.83 -0.02 0.86 16 6 C -0.10 -1.94 5.15 -26.65 -0.14 -2.08 16 7 C -0.08 -1.71 2.20 -90.50 -0.20 -1.91 16 8 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 9 C -0.52 -14.53 8.45 -34.44 -0.29 -14.82 16 10 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 13 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C -0.11 -1.96 5.38 -26.65 -0.14 -2.10 16 18 C 0.06 0.86 5.42 -3.83 -0.02 0.84 16 19 H 0.22 1.73 7.80 -54.09 -0.42 1.31 16 20 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 21 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 22 H 0.07 1.13 6.36 -51.93 -0.33 0.80 16 23 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 1.51 7.06 -51.93 -0.37 1.14 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 LS Contribution 272.90 15.07 4.11 4.11 Total: -1.00 -30.49 272.90 -7.52 -38.01 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -5.27 Total: -3.49 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -0.94 Total: -19.71 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.40 Total: -35.73 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.49 -7.52 -38.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306971200.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.000 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds