Wall clock time and date at job start Mon Mar 30 2020 02:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47167 * 273.54201 * 3 2 1 5 5 C 1.46851 * 110.99898 * 45.79106 * 4 3 2 6 6 C 1.53039 * 109.52490 * 185.83779 * 5 4 3 7 7 C 1.53116 * 109.27694 * 300.82213 * 6 5 4 8 8 C 1.53002 * 109.57479 * 177.58614 * 7 6 5 9 9 C 1.50702 * 109.46629 * 65.28624 * 8 7 6 10 10 H 1.08002 * 120.00204 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99548 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00593 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99672 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47287 * 60.00621 * 13 11 9 15 15 H 1.48496 * 109.47092 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47283 * 300.00224 * 13 11 9 17 17 C 1.53121 * 109.16460 * 57.65281 * 7 6 5 18 18 C 1.46842 * 111.00041 * 169.99731 * 4 3 2 19 19 H 4.40889 * 5.52257 * 180.02562 * 4 1 2 20 20 H 1.09002 * 109.47120 * 153.54271 * 3 2 1 21 21 H 1.09001 * 109.46952 * 33.54408 * 3 2 1 22 22 H 1.08996 * 109.46471 * 305.85679 * 5 4 3 23 23 H 1.09004 * 109.45929 * 65.82278 * 5 4 3 24 24 H 1.08992 * 109.50519 * 180.88071 * 6 5 4 25 25 H 1.09003 * 109.50071 * 60.76201 * 6 5 4 26 26 H 1.08999 * 109.52546 * 297.75036 * 7 6 5 27 27 H 1.08996 * 109.47250 * 185.28218 * 8 7 6 28 28 H 1.08996 * 109.47208 * 305.28642 * 8 7 6 29 29 H 0.96994 * 120.00371 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.50961 * 182.40006 * 17 7 6 31 31 H 1.09008 * 109.53352 * 62.30425 * 17 7 6 32 32 H 1.08996 * 109.46789 * 294.18136 * 18 4 3 33 33 H 1.09007 * 109.45854 * 54.15867 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.0847 1.3823 5 6 2.4103 -1.1162 2.1349 6 6 2.8429 -1.0780 3.6023 7 6 4.3520 -1.3215 3.6910 8 6 4.8020 -1.2250 5.1502 9 6 4.1777 -2.3442 5.9432 10 1 3.5256 -3.0534 5.4552 11 6 4.4399 -2.4631 7.2916 12 7 5.2343 -1.5998 7.8858 13 14 3.6655 -3.8499 8.2748 14 1 4.0920 -5.1553 7.7100 15 1 4.1022 -3.7564 9.6910 16 1 2.1861 -3.7399 8.2053 17 6 5.0817 -0.2627 2.8596 18 6 4.5841 -0.3245 1.4136 19 1 -1.0500 -0.0002 0.0001 20 1 3.0089 0.9209 -0.4579 21 1 3.0097 -0.8557 -0.5679 22 1 1.3387 -0.9290 2.0672 23 1 2.6348 -2.0970 1.7155 24 1 2.3159 -1.8540 4.1574 25 1 2.6062 -0.1020 4.0262 26 1 4.5845 -2.3131 3.3028 27 1 5.8878 -1.3051 5.2016 28 1 4.4882 -0.2670 5.5646 29 1 5.4184 -1.6832 8.8344 30 1 6.1540 -0.4561 2.8841 31 1 4.8808 0.7264 3.2716 32 1 4.7983 -1.3090 0.9977 33 1 5.0913 0.4378 0.8223 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306971200.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:18 Heat of formation + Delta-G solvation = 20.147369 kcal Electronic energy + Delta-G solvation = -13364.312516 eV Core-core repulsion = 11196.922114 eV Total energy + Delta-G solvation = -2167.390402 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.16233 -36.59524 -34.69265 -33.25978 -31.65956 -30.11663 -27.33075 -25.05766 -23.99639 -22.28047 -20.46568 -18.95561 -18.42275 -16.98364 -16.47776 -16.03579 -15.72872 -15.15154 -14.83174 -14.36084 -14.18074 -13.81851 -13.43983 -13.20159 -12.97825 -12.62958 -12.44421 -12.19789 -12.03558 -11.71663 -11.37465 -11.32933 -11.08384 -10.87065 -10.69735 -10.51046 -9.25215 -8.16894 -6.26681 1.39304 1.42156 1.49881 1.77750 1.93469 2.41957 3.13539 3.16880 3.49937 4.01380 4.05089 4.09554 4.34326 4.50040 4.51575 4.64695 4.67345 4.77933 4.85481 4.94391 5.04768 5.14566 5.16125 5.38093 5.40538 5.43938 5.57591 5.80712 5.89167 6.09756 6.16484 6.30545 6.71407 6.89199 7.41558 8.94857 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.047030 B = 0.007034 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.223723 B = 3979.594189 C = 4415.121359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.217 4.217 3 C 0.160 3.840 4 N -0.547 5.547 5 C 0.066 3.934 6 C -0.094 4.094 7 C -0.076 4.076 8 C 0.034 3.966 9 C -0.532 4.532 10 H 0.059 0.941 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.960 3.040 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.268 1.268 17 C -0.108 4.108 18 C 0.066 3.934 19 H 0.246 0.754 20 H 0.114 0.886 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.031 0.969 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.049 0.951 27 H -0.012 1.012 28 H -0.013 1.013 29 H 0.262 0.738 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.750 1.802 -15.552 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.217 4.217 3 C 0.034 3.966 4 N -0.273 5.273 5 C -0.062 4.062 6 C -0.132 4.132 7 C -0.094 4.094 8 C -0.003 4.003 9 C -0.570 4.570 10 H 0.077 0.923 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.785 3.215 14 H -0.192 1.192 15 H -0.209 1.209 16 H -0.193 1.193 17 C -0.146 4.146 18 C -0.062 4.062 19 H 0.262 0.738 20 H 0.131 0.869 21 H 0.085 0.915 22 H 0.093 0.907 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.007 0.993 28 H 0.005 0.995 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.731 2.293 -15.170 16.378 hybrid contribution -0.140 -1.295 0.718 1.488 sum -5.871 0.998 -14.451 15.630 Atomic orbital electron populations 1.25700 0.96823 1.00212 0.98428 1.23304 0.95156 1.01360 1.01889 1.19195 0.84662 1.03232 0.89505 1.62049 1.04784 1.48010 1.12435 1.22053 0.98283 0.92360 0.93477 1.21416 0.95982 1.00757 0.94998 1.21102 0.95120 0.97559 0.95647 1.19005 0.94417 0.95035 0.91885 1.21632 1.28384 1.12733 0.94259 0.92273 1.25952 0.95819 0.98831 0.99284 1.70092 1.38181 1.38139 1.11162 0.85576 0.79031 0.79533 0.77375 1.19210 1.20911 1.19304 1.21616 0.99315 0.98917 0.94769 1.22089 0.86693 1.00663 0.96716 0.73798 0.86867 0.91533 0.90692 0.95108 0.92641 0.93496 0.93238 0.99343 0.99468 0.92914 0.91410 0.92649 0.94219 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 19.01 74.32 1.41 -2.58 16 2 C -0.22 -5.19 11.51 31.13 0.36 -4.84 16 3 C 0.16 3.57 5.77 84.50 0.49 4.05 16 4 N -0.55 -15.57 4.79 -907.45 -4.35 -19.92 16 5 C 0.07 2.10 5.08 86.33 0.44 2.54 16 6 C -0.09 -3.69 5.15 30.65 0.16 -3.53 16 7 C -0.08 -3.18 2.20 -10.71 -0.02 -3.21 16 8 C 0.03 1.82 4.45 29.85 0.13 1.95 16 9 C -0.53 -30.66 8.45 25.60 0.22 -30.44 16 10 H 0.06 3.27 7.08 -2.91 -0.02 3.25 16 11 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 12 N -0.94 -58.05 13.29 21.45 0.28 -57.77 16 13 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 C -0.11 -3.74 5.38 30.65 0.16 -3.58 16 18 C 0.07 1.76 5.42 86.33 0.47 2.23 16 19 H 0.25 3.09 7.80 -4.42 -0.03 3.06 16 20 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 21 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 22 H 0.07 2.31 6.36 -2.39 -0.02 2.30 16 23 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 2.33 7.06 -2.39 -0.02 2.31 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 28 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 29 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 2.11 8.12 -2.38 -0.02 2.09 16 Total: -1.00 -66.37 272.90 3.29 -63.08 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.05 Total: 4.62 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 4.28 Total: -37.04 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -4.06 Total: -77.68 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.37 3.29 -63.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306971200.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.225 kcal (2) G-P(sol) polarization free energy of solvation -66.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds