Wall clock time and date at job start Mon Mar 30 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99824 * 2 1 4 4 C 1.39060 * 111.00062 * 123.95026 * 2 1 3 5 5 N 1.32272 * 119.76417 * 304.69769 * 4 2 1 6 6 C 1.32038 * 121.71205 * 179.72148 * 5 4 2 7 7 C 1.38119 * 121.04260 * 0.58836 * 6 5 4 8 8 C 1.38709 * 119.41407 * 359.42328 * 7 6 5 9 9 C 1.39135 * 118.42531 * 0.27683 * 8 7 6 10 10 N 1.39383 * 120.53821 * 179.97438 * 9 8 7 11 11 C 1.36798 * 120.00109 * 354.27090 * 10 9 8 12 12 H 1.08000 * 119.99787 * 359.97438 * 11 10 9 13 13 C 1.38750 * 120.00577 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99710 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00289 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46961 * 89.99872 * 15 13 11 17 17 H 1.48495 * 109.47196 * 209.99559 * 15 13 11 18 18 H 1.48490 * 109.47069 * 329.99910 * 15 13 11 19 19 H 1.08993 * 109.47696 * 296.04605 * 1 2 3 20 20 H 1.09000 * 109.46852 * 56.04587 * 1 2 3 21 21 H 1.09002 * 109.47237 * 176.04387 * 1 2 3 22 22 H 1.08999 * 109.47264 * 188.79267 * 3 2 1 23 23 H 1.08994 * 109.47491 * 308.80058 * 3 2 1 24 24 H 1.09004 * 109.46815 * 68.79617 * 3 2 1 25 25 H 1.08000 * 119.47691 * 180.28755 * 6 5 4 26 26 H 1.08000 * 120.29553 * 179.69803 * 7 6 5 27 27 H 1.07993 * 120.79104 * 180.29992 * 8 7 6 28 28 H 0.97002 * 120.00596 * 174.26917 * 10 9 8 29 29 H 0.96998 * 120.00173 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9673 -0.7250 1.0769 5 7 1.5924 -0.4151 2.3070 6 6 2.0373 -1.0811 3.3567 7 6 2.9272 -2.1274 3.2116 8 6 3.3503 -2.4908 1.9416 9 6 2.8621 -1.7772 0.8515 10 7 3.2584 -2.1045 -0.4441 11 6 4.2214 -3.0550 -0.6454 12 1 4.6749 -3.5515 0.1997 13 6 4.6163 -3.3805 -1.9350 14 7 4.0639 -2.7750 -2.9650 15 14 5.9318 -4.6779 -2.2097 16 1 5.2924 -6.0124 -2.3349 17 1 6.6797 -4.3687 -3.4547 18 1 6.8689 -4.6842 -1.0579 19 1 -0.3634 0.4512 0.9232 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3634 -1.0252 -0.0709 22 1 3.0737 1.3468 -0.1571 23 1 1.5245 1.9415 -0.8008 24 1 1.7785 1.8438 0.9581 25 1 1.7038 -0.8002 4.3447 26 1 3.2871 -2.6607 4.0790 27 1 4.0418 -3.3084 1.8021 28 1 2.8513 -1.6583 -1.2032 29 1 4.3396 -3.0028 -3.8666 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307091920.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:56 Heat of formation + Delta-G solvation = 48.906100 kcal Electronic energy + Delta-G solvation = -13395.719830 eV Core-core repulsion = 11126.036157 eV Total energy + Delta-G solvation = -2269.683673 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.39163 -35.95537 -35.40169 -32.15143 -30.24580 -28.15756 -26.99512 -24.87383 -24.10380 -21.31589 -20.69350 -17.82121 -16.61855 -16.04170 -15.25172 -14.53484 -14.44511 -13.94762 -13.53578 -13.15369 -12.58516 -12.33230 -11.81668 -11.74852 -11.47913 -11.38971 -11.13864 -11.04665 -10.62241 -10.51531 -10.29871 -8.95784 -8.73618 -8.43005 -7.84101 -6.79394 -6.64540 -3.79159 2.24034 2.55313 3.12258 3.13098 3.15865 3.97917 4.55446 4.68355 5.16020 5.21790 5.61330 5.84203 5.89254 5.94765 6.02249 6.12812 6.26243 6.34634 6.39273 6.50750 6.69755 7.03172 7.13756 7.33916 7.53631 7.55283 7.70379 8.26360 8.67885 9.08444 9.32327 9.52525 10.50159 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.035405 B = 0.010538 C = 0.008557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.658496 B = 2656.477327 C = 3271.313414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.478 5.478 3 C 0.035 3.965 4 C 0.154 3.846 5 N -0.463 5.463 6 C -0.046 4.046 7 C -0.107 4.107 8 C -0.198 4.198 9 C 0.183 3.817 10 N -0.526 5.526 11 C -0.305 4.305 12 H 0.102 0.898 13 C 0.023 3.977 14 N -0.879 5.879 15 Si 0.934 3.066 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.268 1.268 19 H 0.034 0.966 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.031 0.969 25 H 0.127 0.873 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.412 0.588 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 2.041 4.276 5.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.200 5.200 3 C -0.113 4.113 4 C -0.086 4.086 5 N -0.174 5.174 6 C -0.207 4.207 7 C -0.129 4.129 8 C -0.230 4.230 9 C 0.054 3.946 10 N -0.125 5.125 11 C -0.436 4.436 12 H 0.120 0.880 13 C -0.181 4.181 14 N -0.514 5.514 15 Si 0.760 3.240 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.192 1.192 19 H 0.053 0.947 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.050 0.950 25 H 0.144 0.856 26 H 0.129 0.871 27 H 0.141 0.859 28 H 0.249 0.751 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.017 2.302 3.508 4.655 hybrid contribution 0.791 -0.780 0.084 1.114 sum -1.226 1.521 3.592 4.089 Atomic orbital electron populations 1.22265 0.87203 1.01707 1.00013 1.59750 1.08023 1.13596 1.38673 1.22318 1.00581 0.88481 0.99902 1.18699 1.04036 0.98653 0.87177 1.67041 1.23183 1.27914 0.99260 1.21379 1.04238 0.99487 0.95588 1.21553 0.97331 0.97443 0.96525 1.20711 1.07178 1.03939 0.91162 1.18323 0.95375 0.94135 0.86756 1.41042 1.33545 1.34292 1.03600 1.19801 1.14413 1.15645 0.93736 0.88028 1.25366 0.99013 0.98825 0.94943 1.69732 1.41596 1.40815 0.99256 0.85798 0.79921 0.79997 0.78316 1.20088 1.20562 1.19232 0.94694 0.92161 0.92096 0.91870 0.92049 0.95020 0.85590 0.87138 0.85865 0.75057 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.39 60.06 0.56 1.21 15 2 N -0.48 -9.77 4.18 -188.72 -0.79 -10.56 15 3 C 0.04 0.63 9.57 60.07 0.57 1.21 15 4 C 0.15 3.45 5.39 -154.77 -0.83 2.62 15 5 N -0.46 -10.01 9.45 -12.21 -0.12 -10.12 15 6 C -0.05 -0.92 11.17 -17.51 -0.20 -1.11 15 7 C -0.11 -2.06 10.10 -39.45 -0.40 -2.46 15 8 C -0.20 -4.32 9.39 -39.07 -0.37 -4.69 15 9 C 0.18 4.35 6.66 -83.45 -0.56 3.79 15 10 N -0.53 -13.30 5.41 -9.38 -0.05 -13.35 15 11 C -0.31 -7.82 9.56 -15.15 -0.14 -7.96 15 12 H 0.10 2.48 5.78 -52.49 -0.30 2.17 15 13 C 0.02 0.59 5.50 -17.45 -0.10 0.50 15 14 N -0.88 -23.33 13.05 55.49 0.72 -22.61 15 15 Si 0.93 19.47 29.55 -169.99 -5.02 14.45 15 16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 19 H 0.03 0.61 7.76 -51.93 -0.40 0.21 15 20 H 0.06 0.91 8.07 -51.93 -0.42 0.49 15 21 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 22 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.06 0.94 8.04 -51.93 -0.42 0.52 15 24 H 0.03 0.56 7.91 -51.93 -0.41 0.15 15 25 H 0.13 2.13 8.06 -52.49 -0.42 1.71 15 26 H 0.11 1.74 8.06 -52.49 -0.42 1.32 15 27 H 0.12 2.60 6.12 -52.49 -0.32 2.28 15 28 H 0.41 10.82 7.20 -40.82 -0.29 10.53 15 29 H 0.28 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 251.28 15.07 3.79 3.79 Total: -1.00 -27.37 251.28 -6.31 -33.68 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -3.39 Total: 11.63 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.45 Total: -6.91 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.23 Total: -56.64 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.37 -6.31 -33.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307091920.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.588 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds