Wall clock time and date at job start Mon Mar 30 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99824 * 2 1 4 4 C 1.39060 * 111.00062 * 123.95026 * 2 1 3 5 5 N 1.32272 * 119.76417 * 304.69769 * 4 2 1 6 6 C 1.32038 * 121.71205 * 179.72148 * 5 4 2 7 7 C 1.38119 * 121.04260 * 0.58836 * 6 5 4 8 8 C 1.38709 * 119.41407 * 359.42328 * 7 6 5 9 9 C 1.39135 * 118.42531 * 0.27683 * 8 7 6 10 10 N 1.39383 * 120.53821 * 179.97438 * 9 8 7 11 11 C 1.36798 * 120.00109 * 354.27090 * 10 9 8 12 12 H 1.08000 * 119.99787 * 359.97438 * 11 10 9 13 13 C 1.38750 * 120.00577 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99710 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00289 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46961 * 89.99872 * 15 13 11 17 17 H 1.48495 * 109.47196 * 209.99559 * 15 13 11 18 18 H 1.48490 * 109.47069 * 329.99910 * 15 13 11 19 19 H 1.08993 * 109.47696 * 296.04605 * 1 2 3 20 20 H 1.09000 * 109.46852 * 56.04587 * 1 2 3 21 21 H 1.09002 * 109.47237 * 176.04387 * 1 2 3 22 22 H 1.08999 * 109.47264 * 188.79267 * 3 2 1 23 23 H 1.08994 * 109.47491 * 308.80058 * 3 2 1 24 24 H 1.09004 * 109.46815 * 68.79617 * 3 2 1 25 25 H 1.08000 * 119.47691 * 180.28755 * 6 5 4 26 26 H 1.08000 * 120.29553 * 179.69803 * 7 6 5 27 27 H 1.07993 * 120.79104 * 180.29992 * 8 7 6 28 28 H 0.97002 * 120.00596 * 174.26917 * 10 9 8 29 29 H 0.96998 * 120.00173 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9673 -0.7250 1.0769 5 7 1.5924 -0.4151 2.3070 6 6 2.0373 -1.0811 3.3567 7 6 2.9272 -2.1274 3.2116 8 6 3.3503 -2.4908 1.9416 9 6 2.8621 -1.7772 0.8515 10 7 3.2584 -2.1045 -0.4441 11 6 4.2214 -3.0550 -0.6454 12 1 4.6749 -3.5515 0.1997 13 6 4.6163 -3.3805 -1.9350 14 7 4.0639 -2.7750 -2.9650 15 14 5.9318 -4.6779 -2.2097 16 1 5.2924 -6.0124 -2.3349 17 1 6.6797 -4.3687 -3.4547 18 1 6.8689 -4.6842 -1.0579 19 1 -0.3634 0.4512 0.9232 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3634 -1.0252 -0.0709 22 1 3.0737 1.3468 -0.1571 23 1 1.5245 1.9415 -0.8008 24 1 1.7785 1.8438 0.9581 25 1 1.7038 -0.8002 4.3447 26 1 3.2871 -2.6607 4.0790 27 1 4.0418 -3.3084 1.8021 28 1 2.8513 -1.6583 -1.2032 29 1 4.3396 -3.0028 -3.8666 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307091920.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:56 Heat of formation + Delta-G solvation = 31.590661 kcal Electronic energy + Delta-G solvation = -13396.470684 eV Core-core repulsion = 11126.036157 eV Total energy + Delta-G solvation = -2270.434527 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.06982 -37.56289 -37.12559 -33.96323 -31.90876 -29.88479 -28.43531 -26.69154 -25.67369 -23.03427 -22.32161 -19.63398 -18.31474 -17.67105 -16.98567 -16.12804 -16.06529 -15.60043 -15.12559 -14.72984 -14.24327 -14.00863 -13.51633 -13.27360 -13.05377 -12.98151 -12.60686 -12.59421 -12.31316 -12.18942 -12.07710 -10.77232 -10.37840 -10.08025 -9.39556 -8.57907 -8.47610 -5.70777 0.57382 0.85269 1.42957 1.50635 1.55690 2.27466 2.93274 3.02642 3.38095 3.45036 4.08514 4.33576 4.36980 4.49604 4.58947 4.65581 4.70492 4.83954 4.95186 4.96900 5.03314 5.27277 5.37543 5.63990 5.80573 6.01659 6.08368 6.61941 6.80930 7.37704 7.54584 7.66363 8.69319 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.035405 B = 0.010538 C = 0.008557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.658496 B = 2656.477327 C = 3271.313414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.499 5.499 3 C 0.040 3.960 4 C 0.148 3.852 5 N -0.477 5.477 6 C -0.034 4.034 7 C -0.100 4.100 8 C -0.209 4.209 9 C 0.163 3.837 10 N -0.554 5.554 11 C -0.323 4.323 12 H 0.106 0.894 13 C -0.027 4.027 14 N -0.922 5.922 15 Si 1.001 2.999 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.259 1.259 19 H 0.036 0.964 20 H 0.086 0.914 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.089 0.911 24 H 0.032 0.968 25 H 0.164 0.836 26 H 0.154 0.846 27 H 0.125 0.875 28 H 0.401 0.599 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 2.054 6.194 6.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.221 5.221 3 C -0.107 4.107 4 C -0.090 4.090 5 N -0.188 5.188 6 C -0.195 4.195 7 C -0.120 4.120 8 C -0.241 4.241 9 C 0.038 3.962 10 N -0.156 5.156 11 C -0.453 4.453 12 H 0.124 0.876 13 C -0.227 4.227 14 N -0.560 5.560 15 Si 0.824 3.176 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.183 1.183 19 H 0.054 0.946 20 H 0.105 0.895 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.107 0.893 24 H 0.050 0.950 25 H 0.181 0.819 26 H 0.172 0.828 27 H 0.143 0.857 28 H 0.236 0.764 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.136 2.331 5.481 6.328 hybrid contribution 0.673 -0.656 -0.193 0.960 sum -1.463 1.675 5.288 5.736 Atomic orbital electron populations 1.22268 0.85648 1.01510 1.01244 1.59737 1.09483 1.14658 1.38271 1.22298 0.99837 0.87602 1.00959 1.18932 1.03595 0.98465 0.88028 1.67184 1.23732 1.28534 0.99362 1.22187 1.02422 0.98192 0.96658 1.21975 0.96206 0.97050 0.96803 1.21019 1.07235 1.03927 0.91942 1.18838 0.95693 0.94698 0.86946 1.40954 1.35192 1.35852 1.03641 1.20078 1.14975 1.16071 0.94222 0.87622 1.26232 1.01100 1.00849 0.94495 1.69844 1.43714 1.43000 0.99488 0.84792 0.77348 0.77308 0.78175 1.19751 1.20612 1.18281 0.94574 0.89505 0.93254 0.93425 0.89285 0.94980 0.81894 0.82817 0.85702 0.76355 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 9.39 127.69 1.20 2.60 15 2 N -0.50 -20.17 4.18 -751.00 -3.14 -23.31 15 3 C 0.04 1.42 9.57 127.69 1.22 2.64 15 4 C 0.15 6.52 5.39 133.28 0.72 7.24 15 5 N -0.48 -19.54 9.45 -192.54 -1.82 -21.36 15 6 C -0.03 -1.20 11.17 84.63 0.95 -0.25 15 7 C -0.10 -3.48 10.10 22.35 0.23 -3.25 15 8 C -0.21 -8.84 9.39 22.60 0.21 -8.63 15 9 C 0.16 7.74 6.66 38.57 0.26 8.00 15 10 N -0.55 -28.85 5.41 -183.59 -0.99 -29.84 15 11 C -0.32 -16.95 9.56 84.04 0.80 -16.15 15 12 H 0.11 5.22 5.78 -2.91 -0.02 5.21 15 13 C -0.03 -1.40 5.50 84.85 0.47 -0.93 15 14 N -0.92 -50.75 13.05 21.64 0.28 -50.46 15 15 Si 1.00 40.52 29.55 68.60 2.03 42.54 15 16 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 17 H -0.28 -11.23 7.11 99.48 0.71 -10.53 15 18 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 19 H 0.04 1.21 7.76 -2.39 -0.02 1.19 15 20 H 0.09 2.47 8.07 -2.39 -0.02 2.45 15 21 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.09 2.58 8.04 -2.39 -0.02 2.56 15 24 H 0.03 1.10 7.91 -2.39 -0.02 1.08 15 25 H 0.16 4.62 8.06 -2.91 -0.02 4.60 15 26 H 0.15 4.03 8.06 -2.91 -0.02 4.00 15 27 H 0.13 5.17 6.12 -2.91 -0.02 5.15 15 28 H 0.40 21.98 7.20 -92.71 -0.67 21.31 15 29 H 0.28 14.26 8.31 -92.71 -0.77 13.49 15 Total: -1.00 -59.26 251.28 2.89 -56.37 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.49 Total: 34.79 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 6.05 Total: -8.73 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -5.67 Total: -124.97 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Total: -59.26 2.89 -56.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307091920.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.961 kcal (2) G-P(sol) polarization free energy of solvation -59.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds