Wall clock time and date at job start Mon Mar 30 2020 02:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 99.60215 * 3 2 1 5 5 C 1.52994 * 109.47529 * 288.22889 * 4 3 2 6 6 N 1.46896 * 109.47380 * 185.52387 * 5 4 3 7 7 C 1.47901 * 111.00052 * 184.17153 * 6 5 4 8 8 C 1.53991 * 107.05534 * 145.84813 * 7 6 5 9 9 C 1.54588 * 105.14285 * 358.77475 * 8 7 6 10 10 H 1.09004 * 110.72636 * 96.57708 * 9 8 7 11 11 C 1.50706 * 110.72703 * 219.68590 * 9 8 7 12 12 H 1.07998 * 119.99580 * 114.59911 * 11 9 8 13 13 C 1.37875 * 119.99568 * 294.59759 * 11 9 8 14 14 N 1.31507 * 120.00491 * 2.55011 * 13 11 9 15 15 Si 1.86803 * 119.99396 * 182.55325 * 13 11 9 16 16 H 1.48495 * 109.46951 * 265.01264 * 15 13 11 17 17 H 1.48510 * 109.46768 * 145.01843 * 15 13 11 18 18 H 1.48495 * 109.47232 * 25.01819 * 15 13 11 19 19 C 1.48533 * 111.00176 * 301.57118 * 6 5 4 20 20 H 1.09005 * 109.46710 * 152.16603 * 1 2 3 21 21 H 1.08991 * 109.47251 * 272.16892 * 1 2 3 22 22 H 1.08999 * 109.47104 * 32.16821 * 1 2 3 23 23 H 1.09001 * 109.46870 * 168.22702 * 4 3 2 24 24 H 1.08999 * 109.47189 * 48.23151 * 4 3 2 25 25 H 1.09003 * 109.46958 * 65.52065 * 5 4 3 26 26 H 1.08999 * 109.46999 * 305.52918 * 5 4 3 27 27 H 1.08998 * 109.91396 * 26.49647 * 7 6 5 28 28 H 1.09000 * 109.91758 * 265.20058 * 7 6 5 29 29 H 1.09000 * 110.30806 * 239.86080 * 8 7 6 30 30 H 1.09001 * 110.39391 * 117.73832 * 8 7 6 31 31 H 0.97001 * 120.00163 * 180.02562 * 14 13 11 32 32 H 1.09003 * 110.66224 * 81.84520 * 19 6 5 33 33 H 1.08997 * 110.66655 * 318.71518 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0013 -0.0006 5 6 4.6289 -0.4496 1.3691 6 7 6.0918 -0.3229 1.4122 7 6 6.6317 -0.8437 2.6869 8 6 8.0003 -1.4758 2.3731 9 6 8.1822 -1.3080 0.8471 10 1 8.7798 -0.4239 0.6247 11 6 8.8108 -2.5390 0.2464 12 1 8.2510 -3.1462 -0.4496 13 6 10.1003 -2.8898 0.5853 14 7 10.7641 -2.1791 1.4706 15 14 10.9046 -4.3748 -0.2131 16 1 10.7290 -5.5624 0.6609 17 1 12.3535 -4.1103 -0.4035 18 1 10.2709 -4.6320 -1.5312 19 6 6.7280 -1.1329 0.3420 20 1 -0.3633 -0.9088 -0.4799 21 1 -0.3633 0.0389 1.0268 22 1 -0.3633 0.8699 -0.5471 23 1 4.4807 1.0075 -0.2105 24 1 4.4814 -0.6831 -0.7673 25 1 4.3492 -1.4897 1.5369 26 1 4.1871 0.1751 2.1454 27 1 5.9588 -1.5982 3.0944 28 1 6.7540 -0.0278 3.3992 29 1 7.9991 -2.5326 2.6399 30 1 8.7923 -0.9520 2.9084 31 1 11.6715 -2.4258 1.7088 32 1 6.7123 -0.5967 -0.6069 33 1 6.2346 -2.1001 0.2468 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307176732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:36 Heat of formation + Delta-G solvation = 34.849685 kcal Electronic energy + Delta-G solvation = -12999.403927 eV Core-core repulsion = 10832.651065 eV Total energy + Delta-G solvation = -2166.752862 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.21125 -34.95050 -33.24215 -31.79651 -29.43163 -28.16893 -26.61335 -24.66438 -22.26052 -19.92446 -19.45165 -16.62540 -16.25931 -15.17042 -14.82433 -14.31431 -14.28059 -13.71602 -13.59936 -13.29220 -12.89583 -12.42722 -12.03027 -11.89006 -11.12016 -11.03619 -10.96965 -10.65484 -10.46263 -10.22967 -9.70075 -9.59784 -9.58183 -9.19470 -8.75708 -8.38184 -7.75909 -6.01254 -4.04483 2.76212 2.80681 3.30405 3.37758 3.41210 4.23646 4.43558 4.84060 5.27774 5.32763 5.36186 5.47191 5.52106 5.56132 5.73329 5.83944 5.97885 6.08545 6.13095 6.21178 6.30551 6.46507 6.55571 6.86159 7.14210 7.18529 7.56979 7.67986 7.71683 7.75198 7.88237 8.04892 8.45707 8.98424 9.59766 11.08674 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.053975 B = 0.005902 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.631800 B = 4742.696377 C = 5081.884384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.215 4.215 3 C -0.168 4.168 4 C -0.008 4.008 5 C 0.055 3.945 6 N -0.523 5.523 7 C 0.035 3.965 8 C -0.104 4.104 9 C 0.052 3.948 10 H 0.039 0.961 11 C -0.516 4.516 12 H 0.055 0.945 13 C 0.064 3.936 14 N -0.887 5.887 15 Si 0.890 3.110 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.037 3.963 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.032 0.968 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.719 3.134 -0.642 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.216 4.216 3 C -0.169 4.169 4 C -0.045 4.045 5 C -0.073 4.073 6 N -0.247 5.247 7 C -0.093 4.093 8 C -0.143 4.143 9 C 0.033 3.967 10 H 0.057 0.943 11 C -0.555 4.555 12 H 0.074 0.926 13 C -0.138 4.138 14 N -0.525 5.525 15 Si 0.718 3.282 16 H -0.209 1.209 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.090 4.090 20 H 0.095 0.905 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.113 0.887 24 H 0.106 0.894 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.430 3.702 -0.600 13.944 hybrid contribution 0.248 -1.714 -0.207 1.744 sum -13.182 1.989 -0.808 13.355 Atomic orbital electron populations 1.18774 0.84894 1.02657 1.02705 1.22334 0.93886 1.03050 1.02291 1.22529 0.93695 1.00128 1.00502 1.18734 0.83451 1.03619 0.98699 1.22125 0.90160 0.99110 0.95950 1.64795 1.02913 1.52568 1.04459 1.22953 0.97832 0.97151 0.91354 1.22353 0.92433 0.99153 1.00349 1.19547 0.89216 0.97229 0.90743 0.94321 1.21110 0.98543 1.09530 1.26324 0.92632 1.24967 0.97228 0.96667 0.94980 1.69977 1.11494 1.39219 1.31845 0.86619 0.78750 0.83040 0.79824 1.20852 1.21177 1.19861 1.23422 0.97835 0.93863 0.93847 0.90547 0.90493 0.90544 0.88733 0.89404 0.95016 0.91321 0.95377 0.91944 0.92781 0.92091 0.93048 0.91702 0.94726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.30 10.32 34.37 0.35 0.05 16 2 C -0.22 -2.89 14.13 -37.12 -0.52 -3.41 16 3 C -0.17 -2.49 13.34 -37.12 -0.50 -2.98 16 4 C -0.01 -0.12 5.37 -29.52 -0.16 -0.28 16 5 C 0.06 0.90 4.79 -3.83 -0.02 0.89 16 6 N -0.52 -10.10 5.35 -230.46 -1.23 -11.33 16 7 C 0.03 0.69 6.70 -2.76 -0.02 0.67 16 8 C -0.10 -2.46 5.68 -25.38 -0.14 -2.61 16 9 C 0.05 1.30 2.94 -89.91 -0.26 1.04 16 10 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 11 C -0.52 -14.18 8.38 -34.44 -0.29 -14.46 16 12 H 0.06 1.50 7.77 -52.49 -0.41 1.09 16 13 C 0.06 1.76 5.37 -17.82 -0.10 1.67 16 14 N -0.89 -25.54 12.63 55.43 0.70 -24.84 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 C 0.04 0.79 4.78 -1.90 -0.01 0.78 16 20 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.09 1.30 7.20 -51.93 -0.37 0.93 16 25 H 0.03 0.53 7.97 -51.93 -0.41 0.12 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.03 0.52 7.67 -51.93 -0.40 0.12 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.35 7.84 -51.93 -0.41 0.94 16 30 H 0.06 1.51 8.12 -51.93 -0.42 1.09 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.06 1.30 7.78 -51.93 -0.40 0.90 16 33 H 0.03 0.74 7.91 -51.93 -0.41 0.33 16 LS Contribution 278.22 15.07 4.19 4.19 Total: -1.00 -29.09 278.22 -8.36 -37.45 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.33 Total: -3.05 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -1.66 Total: -18.64 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.53 Total: -36.17 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.09 -8.36 -37.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307176732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.299 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds