Wall clock time and date at job start Mon Mar 30 2020 02:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 99.60215 * 3 2 1 5 5 C 1.52994 * 109.47529 * 288.22889 * 4 3 2 6 6 N 1.46896 * 109.47380 * 185.52387 * 5 4 3 7 7 C 1.47901 * 111.00052 * 184.17153 * 6 5 4 8 8 C 1.53991 * 107.05534 * 145.84813 * 7 6 5 9 9 C 1.54588 * 105.14285 * 358.77475 * 8 7 6 10 10 H 1.09004 * 110.72636 * 96.57708 * 9 8 7 11 11 C 1.50706 * 110.72703 * 219.68590 * 9 8 7 12 12 H 1.07998 * 119.99580 * 114.59911 * 11 9 8 13 13 C 1.37875 * 119.99568 * 294.59759 * 11 9 8 14 14 N 1.31507 * 120.00491 * 2.55011 * 13 11 9 15 15 Si 1.86803 * 119.99396 * 182.55325 * 13 11 9 16 16 H 1.48495 * 109.46951 * 265.01264 * 15 13 11 17 17 H 1.48510 * 109.46768 * 145.01843 * 15 13 11 18 18 H 1.48495 * 109.47232 * 25.01819 * 15 13 11 19 19 C 1.48533 * 111.00176 * 301.57118 * 6 5 4 20 20 H 1.09005 * 109.46710 * 152.16603 * 1 2 3 21 21 H 1.08991 * 109.47251 * 272.16892 * 1 2 3 22 22 H 1.08999 * 109.47104 * 32.16821 * 1 2 3 23 23 H 1.09001 * 109.46870 * 168.22702 * 4 3 2 24 24 H 1.08999 * 109.47189 * 48.23151 * 4 3 2 25 25 H 1.09003 * 109.46958 * 65.52065 * 5 4 3 26 26 H 1.08999 * 109.46999 * 305.52918 * 5 4 3 27 27 H 1.08998 * 109.91396 * 26.49647 * 7 6 5 28 28 H 1.09000 * 109.91758 * 265.20058 * 7 6 5 29 29 H 1.09000 * 110.30806 * 239.86080 * 8 7 6 30 30 H 1.09001 * 110.39391 * 117.73832 * 8 7 6 31 31 H 0.97001 * 120.00163 * 180.02562 * 14 13 11 32 32 H 1.09003 * 110.66224 * 81.84520 * 19 6 5 33 33 H 1.08997 * 110.66655 * 318.71518 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0013 -0.0006 5 6 4.6289 -0.4496 1.3691 6 7 6.0918 -0.3229 1.4122 7 6 6.6317 -0.8437 2.6869 8 6 8.0003 -1.4758 2.3731 9 6 8.1822 -1.3080 0.8471 10 1 8.7798 -0.4239 0.6247 11 6 8.8108 -2.5390 0.2464 12 1 8.2510 -3.1462 -0.4496 13 6 10.1003 -2.8898 0.5853 14 7 10.7641 -2.1791 1.4706 15 14 10.9046 -4.3748 -0.2131 16 1 10.7290 -5.5624 0.6609 17 1 12.3535 -4.1103 -0.4035 18 1 10.2709 -4.6320 -1.5312 19 6 6.7280 -1.1329 0.3420 20 1 -0.3633 -0.9088 -0.4799 21 1 -0.3633 0.0389 1.0268 22 1 -0.3633 0.8699 -0.5471 23 1 4.4807 1.0075 -0.2105 24 1 4.4814 -0.6831 -0.7673 25 1 4.3492 -1.4897 1.5369 26 1 4.1871 0.1751 2.1454 27 1 5.9588 -1.5982 3.0944 28 1 6.7540 -0.0278 3.3992 29 1 7.9991 -2.5326 2.6399 30 1 8.7923 -0.9520 2.9084 31 1 11.6715 -2.4258 1.7088 32 1 6.7123 -0.5967 -0.6069 33 1 6.2346 -2.1001 0.2468 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307176732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:35 Heat of formation + Delta-G solvation = 17.664434 kcal Electronic energy + Delta-G solvation = -13000.149135 eV Core-core repulsion = 10832.651065 eV Total energy + Delta-G solvation = -2167.498070 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.85241 -36.23661 -34.92672 -33.28416 -30.93750 -29.80898 -27.82784 -26.54809 -23.75432 -21.56488 -21.32076 -18.44124 -17.64674 -16.68080 -16.54955 -15.93547 -15.76896 -14.85715 -14.52872 -14.35571 -14.22915 -14.08199 -13.57550 -13.49524 -13.00661 -12.80753 -12.55894 -12.40336 -12.22388 -11.93719 -11.61498 -11.12689 -10.82409 -10.66563 -10.58263 -10.49416 -9.32044 -8.13590 -6.23954 1.41355 1.42550 1.53388 1.71470 1.77483 2.42874 3.06328 3.18251 3.53646 4.02429 4.11262 4.18161 4.43838 4.50475 4.54160 4.62321 4.79574 4.82577 4.83699 4.87018 4.98365 5.01911 5.06814 5.14112 5.26049 5.31119 5.60551 5.78519 5.85451 6.00765 6.23061 6.39332 6.71368 6.86371 7.43984 8.96141 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.053975 B = 0.005902 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.631800 B = 4742.696377 C = 5081.884384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.201 4.201 3 C -0.216 4.216 4 C 0.000 4.000 5 C 0.060 3.940 6 N -0.526 5.526 7 C 0.043 3.957 8 C -0.096 4.096 9 C 0.040 3.960 10 H 0.006 0.994 11 C -0.535 4.535 12 H 0.055 0.945 13 C 0.013 3.987 14 N -0.918 5.918 15 Si 0.956 3.044 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.266 1.266 19 C 0.052 3.948 20 H 0.092 0.908 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.029 0.971 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.261 0.739 32 H 0.074 0.926 33 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.646 2.842 -0.975 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.201 4.201 3 C -0.217 4.217 4 C -0.037 4.037 5 C -0.069 4.069 6 N -0.250 5.250 7 C -0.085 4.085 8 C -0.135 4.135 9 C 0.021 3.979 10 H 0.024 0.976 11 C -0.573 4.573 12 H 0.073 0.927 13 C -0.186 4.186 14 N -0.557 5.557 15 Si 0.781 3.219 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.075 4.075 20 H 0.111 0.889 21 H 0.112 0.888 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.101 0.899 25 H 0.048 0.952 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.376 3.414 -0.937 15.778 hybrid contribution 0.775 -1.587 -0.097 1.769 sum -14.601 1.826 -1.033 14.751 Atomic orbital electron populations 1.19093 0.81904 1.04298 1.04314 1.23394 0.95202 1.01202 1.00298 1.22636 0.94148 1.02226 1.02696 1.18555 0.84062 1.03530 0.97506 1.22154 0.87894 0.99335 0.97488 1.64787 1.04866 1.51876 1.03460 1.22857 0.95645 0.97932 0.92024 1.22140 0.94341 0.97939 0.99087 1.19520 0.91209 0.95124 0.92034 0.97624 1.21456 0.99134 1.10271 1.26434 0.92654 1.25767 0.97850 0.99500 0.95462 1.70102 1.11762 1.40843 1.33017 0.85579 0.77672 0.79530 0.79098 1.20277 1.20850 1.19057 1.23178 0.95288 0.94284 0.94780 0.88945 0.88794 0.88648 0.88536 0.89902 0.95237 0.89996 0.93814 0.90248 0.94723 0.94256 0.93010 0.90729 0.94915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.57 10.32 70.18 0.72 0.15 16 2 C -0.20 -4.91 14.13 31.12 0.44 -4.47 16 3 C -0.22 -6.09 13.34 31.13 0.42 -5.67 16 4 C 0.00 0.01 5.37 28.79 0.15 0.16 16 5 C 0.06 1.85 4.79 86.30 0.41 2.26 16 6 N -0.53 -19.76 5.35 -883.04 -4.73 -24.48 16 7 C 0.04 1.67 6.70 86.45 0.58 2.24 16 8 C -0.10 -4.65 5.68 31.47 0.18 -4.47 16 9 C 0.04 2.08 2.94 -10.34 -0.03 2.05 16 10 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 11 C -0.53 -29.78 8.38 25.60 0.21 -29.57 16 12 H 0.06 3.01 7.77 -2.91 -0.02 2.98 16 13 C 0.01 0.75 5.37 84.66 0.45 1.20 16 14 N -0.92 -53.99 12.63 21.45 0.27 -53.72 16 15 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 C 0.05 2.20 4.78 86.65 0.41 2.61 16 20 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 21 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.10 2.66 8.14 -2.39 -0.02 2.65 16 24 H 0.08 2.40 7.20 -2.39 -0.02 2.38 16 25 H 0.03 0.94 7.97 -2.39 -0.02 0.92 16 26 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.04 1.56 7.67 -2.39 -0.02 1.54 16 28 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.03 1.76 7.84 -2.39 -0.02 1.74 16 30 H 0.04 2.01 8.12 -2.39 -0.02 1.99 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.07 2.97 7.78 -2.39 -0.02 2.95 16 33 H 0.03 1.38 7.91 -2.39 -0.02 1.37 16 Total: -1.00 -62.46 278.22 2.59 -59.87 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.06 Total: 6.00 kcal Atomic # 6 Polarization: -37.45 SS G_CDS: 3.96 Total: -33.49 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -4.45 Total: -78.20 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -62.46 2.59 -59.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307176732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.532 kcal (2) G-P(sol) polarization free energy of solvation -62.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds