Wall clock time and date at job start Mon Mar 30 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47196 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47200 * 179.97438 * 227.48208 * 3 2 1 5 5 C 1.53003 * 109.46903 * 226.80460 * 4 3 2 6 6 N 1.46897 * 109.47175 * 180.02562 * 5 4 3 7 7 C 1.48813 * 111.18681 * 52.66416 * 6 5 4 8 8 C 1.54933 * 103.35205 * 159.50572 * 7 6 5 9 9 C 1.54594 * 102.91997 * 322.69117 * 8 7 6 10 10 H 1.09005 * 110.30718 * 263.04287 * 9 8 7 11 11 C 1.50700 * 110.39549 * 140.91819 * 9 8 7 12 12 H 1.07993 * 120.00127 * 244.23462 * 11 9 8 13 13 C 1.37877 * 119.99781 * 64.23084 * 11 9 8 14 14 N 1.31511 * 120.00137 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99819 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46930 * 59.99897 * 15 13 11 17 17 H 1.48494 * 109.47143 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46991 * 300.00310 * 15 13 11 19 19 C 1.47905 * 111.00050 * 169.99751 * 6 5 4 20 20 H 1.08999 * 109.47648 * 85.71574 * 1 2 3 21 21 H 1.09013 * 109.46817 * 205.71466 * 1 2 3 22 22 H 1.09002 * 109.47660 * 325.71047 * 1 2 3 23 23 H 1.09000 * 109.47251 * 106.80802 * 4 3 2 24 24 H 1.08995 * 109.47446 * 346.80266 * 4 3 2 25 25 H 1.09000 * 109.47560 * 59.99783 * 5 4 3 26 26 H 1.09011 * 109.47014 * 299.99886 * 5 4 3 27 27 H 1.08998 * 110.51915 * 41.07024 * 7 6 5 28 28 H 1.09009 * 110.83927 * 278.09443 * 7 6 5 29 29 H 1.08999 * 110.72416 * 204.32980 * 8 7 6 30 30 H 1.08998 * 110.87653 * 81.12010 * 8 7 6 31 31 H 0.97007 * 120.00051 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.91668 * 94.80258 * 19 6 5 33 33 H 1.09002 * 109.91761 * 333.70433 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0016 0.0005 5 6 4.6268 0.9894 1.0523 6 7 6.0958 0.9910 1.0524 7 6 6.6335 1.2201 -0.3161 8 6 8.0788 1.7131 -0.0548 9 6 7.9225 2.5866 1.2111 10 1 7.8336 3.6378 0.9368 11 6 9.0953 2.3857 2.1359 12 1 8.9444 1.9505 3.1127 13 6 10.3610 2.7574 1.7348 14 7 10.5447 3.2878 0.5455 15 14 11.8149 2.5077 2.8809 16 1 11.9498 1.0641 3.2020 17 1 13.0552 2.9849 2.2183 18 1 11.5955 3.2750 4.1333 19 6 6.6246 2.0971 1.8798 20 1 -0.3634 0.0768 -1.0247 21 1 -0.3633 -0.9260 0.4460 22 1 -0.3634 0.8490 0.5790 23 1 4.4814 0.2991 -0.9831 24 1 4.4820 -0.9986 0.2352 25 1 4.2634 0.6921 2.0360 26 1 4.2628 1.9898 0.8175 27 1 6.0532 1.9854 -0.8315 28 1 6.6409 0.2933 -0.8900 29 1 8.4404 2.3093 -0.8926 30 1 8.7471 0.8735 0.1360 31 1 11.4352 3.5497 0.2635 32 1 6.8381 1.7384 2.8867 33 1 5.8990 2.9095 1.9213 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307176734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:37 Heat of formation + Delta-G solvation = 19.161630 kcal Electronic energy + Delta-G solvation = -12988.280402 eV Core-core repulsion = 10820.847255 eV Total energy + Delta-G solvation = -2167.433147 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86114 -36.26975 -34.89615 -33.24142 -30.79398 -30.00034 -27.99061 -26.10875 -24.08546 -21.45564 -21.29232 -18.58121 -17.60453 -16.75359 -16.41102 -16.18874 -15.56688 -14.80295 -14.50704 -14.39870 -14.25666 -13.81482 -13.76090 -13.47528 -12.98354 -12.65112 -12.58237 -12.41372 -12.23384 -11.96643 -11.55933 -11.24976 -10.84314 -10.64548 -10.58415 -10.48411 -9.28229 -8.12038 -6.20858 1.43078 1.44878 1.52319 1.70952 1.77249 2.44953 3.04918 3.19776 3.53144 4.02322 4.12220 4.18359 4.44174 4.48951 4.51194 4.59864 4.78580 4.81518 4.83578 4.91384 4.98304 4.99646 5.06859 5.13583 5.24572 5.36573 5.54979 5.72681 5.85179 6.13349 6.24355 6.38428 6.71269 6.87075 7.45785 8.97454 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.088268 B = 0.005431 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.138753 B = 5154.590139 C = 5288.968671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.202 4.202 3 C -0.217 4.217 4 C 0.001 3.999 5 C 0.058 3.942 6 N -0.523 5.523 7 C 0.039 3.961 8 C -0.086 4.086 9 C 0.029 3.971 10 H 0.000 1.000 11 C -0.528 4.528 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.956 3.044 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.055 3.945 20 H 0.094 0.906 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.041 0.959 28 H 0.091 0.909 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.261 0.739 32 H 0.064 0.936 33 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.976 -5.683 -1.717 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.202 4.202 3 C -0.218 4.218 4 C -0.036 4.036 5 C -0.070 4.070 6 N -0.247 5.247 7 C -0.088 4.088 8 C -0.124 4.124 9 C 0.010 3.990 10 H 0.018 0.982 11 C -0.566 4.566 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.560 5.560 15 Si 0.781 3.219 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.073 4.073 20 H 0.112 0.888 21 H 0.113 0.887 22 H 0.110 0.890 23 H 0.108 0.892 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -14.692 -6.113 -1.614 15.994 hybrid contribution 0.869 0.987 0.165 1.325 sum -13.823 -5.127 -1.449 14.814 Atomic orbital electron populations 1.19093 0.81997 1.04283 1.04297 1.23395 0.95229 1.00852 1.00693 1.22675 0.94229 1.02388 1.02485 1.18617 0.83971 1.01162 0.99866 1.22191 0.87535 0.97565 0.99724 1.64824 1.07085 1.43568 1.09229 1.23329 0.95193 0.99958 0.90368 1.22177 0.94131 0.98214 0.97928 1.19494 0.92180 0.93701 0.93598 0.98187 1.21496 0.92921 1.40807 1.01388 0.92772 1.25762 1.01514 0.94803 0.96643 1.70080 1.22815 1.42927 1.20164 0.85645 0.78477 0.78665 0.79078 1.19669 1.20985 1.19593 1.22862 0.95769 0.90993 0.97684 0.88756 0.88712 0.88991 0.89153 0.88414 0.90512 0.95273 0.94075 0.89046 0.94068 0.94195 0.93058 0.91740 0.95087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.57 10.32 70.18 0.72 0.16 16 2 C -0.20 -4.82 14.13 31.12 0.44 -4.38 16 3 C -0.22 -5.91 13.34 31.13 0.42 -5.49 16 4 C 0.00 0.01 5.37 28.79 0.15 0.17 16 5 C 0.06 1.81 4.99 86.30 0.43 2.24 16 6 N -0.52 -19.84 5.40 -882.21 -4.77 -24.61 16 7 C 0.04 1.46 5.12 86.59 0.44 1.90 16 8 C -0.09 -4.11 5.76 31.80 0.18 -3.92 16 9 C 0.03 1.51 2.86 -10.66 -0.03 1.48 16 10 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 11 C -0.53 -29.78 8.38 25.60 0.21 -29.57 16 12 H 0.05 3.01 7.34 -2.91 -0.02 2.98 16 13 C 0.01 0.65 5.34 84.66 0.45 1.10 16 14 N -0.92 -54.18 12.63 21.45 0.27 -53.91 16 15 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 C 0.05 2.36 6.34 86.44 0.55 2.91 16 20 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 21 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 22 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.09 2.32 6.81 -2.39 -0.02 2.31 16 24 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.03 0.93 7.81 -2.38 -0.02 0.91 16 27 H 0.04 1.46 8.00 -2.39 -0.02 1.44 16 28 H 0.09 2.98 7.69 -2.38 -0.02 2.96 16 29 H 0.04 2.07 8.12 -2.39 -0.02 2.05 16 30 H 0.04 2.05 7.86 -2.39 -0.02 2.03 16 31 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 32 H 0.06 2.86 7.39 -2.39 -0.02 2.84 16 33 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 Total: -1.00 -63.04 276.60 2.57 -60.47 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.07 Total: 5.13 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 3.98 Total: -33.40 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -4.50 Total: -78.52 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -63.04 2.57 -60.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307176734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.629 kcal (2) G-P(sol) polarization free energy of solvation -63.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds